CmaCh04G027210 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G027210
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase family protein
LocationCma_Chr04 : 18355087 .. 18355638 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCTAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTTTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAGTTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

mRNA sequence

ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCTAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTTTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAGTTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Coding sequence (CDS)

ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCGGCACTTGAAAATCAGGTTCTCAAGGCTTGGAATGTACTAGCTCGCCGTCAAATCAGTACCCAACTCATCGAAATTGAATCGCGCCCTCACATTACCCTATTTTCTAGCCCTTTCCTCGAACCCACAAAAGTTGAATCCATCGTTAAGAATTTCGCTTCGAAACAGGAACCTTTGCCTTTGTCCTTAGCGTCAATTGGCAGCCTTCCCAATGACAACAACATTCTCTTTCTCGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAGTTGTGCGAAGCAATGAGGAAAGAAGGAATTGAAACTGGAGAGGAATATCGCCTTGGCTCGTGGATTCCCCATTGCTCTGTTGCTCAGGAGGTGCCCAAGGCTCGAATGGCTGAGGCATTTTGTGTTCTAAGGGATTTGAAGCTACCAGTATCCGGGTATGCAATTGATATTGGGTTGGTGGAATTTTCCCCTGTTCGAGAGCTCTTCTCTTTTGTTCTTGGCAACACTCTCGAAGCTTGA

Protein sequence

MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESIVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEYRLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTLEA
Homology
[Close]
BLAST of CmaCh04G027210 vs. TrEMBL
Match: A0A0A0KVB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.5e-94
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]
BLAST of CmaCh04G027210 vs. TrEMBL
Match: M5X3Z2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 3.6e-85
Identity = 153/183 (83.61%), Postives = 173/183 (94.54%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+C+VAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]
BLAST of CmaCh04G027210 vs. TrEMBL
Match: B9RUD3_RICCO (Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 1.5e-83
Identity = 153/182 (84.07%), Postives = 171/182 (93.96%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITL+SS F+EPTK+ESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSSSFVEPTKLESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VK FASKQEPLPLSL++IG LPNDNN+LFL P PS+SLLQFQSQLC+A++KEGIE  EEY
Sbjct: 61  VKTFASKQEPLPLSLSAIGGLPNDNNVLFLAPTPSLSLLQFQSQLCDALKKEGIEISEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           +  SWIP+C+VAQ+VP+AR+ EAFCVLRDLKLPVSGYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 KPDSWIPYCAVAQDVPRARIGEAFCVLRDLKLPVSGYAMDIGLVEFSPVRELFSFVLGNC 180

Query: 181 LE 183
           +E
Sbjct: 181 VE 182

[Close]
BLAST of CmaCh04G027210 vs. TrEMBL
Match: D7TWT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 2.2e-82
Identity = 151/183 (82.51%), Postives = 167/183 (91.26%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSP +EP ++E+I
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FA KQEPLPLS +SIGSLPND N+LFL P P++SLLQF SQLC+A++KEGIE GEEY
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIPHC VAQEVPK RM EAF VLRDLKLPV+GYA+DIGLVEFSPVRELFSFVL NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LEA 184
           LEA
Sbjct: 255 LEA 257

[Close]
BLAST of CmaCh04G027210 vs. TrEMBL
Match: A5AGR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002643 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.8e-81
Identity = 150/183 (81.97%), Postives = 166/183 (90.71%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSP +EP ++E+I
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K+FA KQEPL LS +SIGSLPND N+LFL P P++SLLQF SQLC+A++KEGIE GEEY
Sbjct: 61  IKSFAGKQEPLXLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIPHC VAQEVPK RM EAF VLRDLKLPV+GYA+DIGLVEFSPVRELFSFVL NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LEA 184
           LEA
Sbjct: 181 LEA 183

[Close]
BLAST of CmaCh04G027210 vs. TAIR10
Match: AT5G40190.1 (AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 277.3 bits (708), Expect = 6.7e-75
Identity = 128/183 (69.95%), Postives = 159/183 (86.89%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ES+
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +KNF SKQEP+ +S ++IGS  +DNN+LFL P PS+SLLQ Q+QLC+ ++KE ++ GEEY
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R+ SW+P C VA +VPK+RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LEA 184
           LE+
Sbjct: 181 LES 183

[Close]
BLAST of CmaCh04G027210 vs. TAIR10
Match: AT3G28140.1 (AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-70
Identity = 129/184 (70.11%), Postives = 154/184 (83.70%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF-LEPTKVES 60
           MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS+   ++ TK+E 
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  IVKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEE 120
           I+K+F+SKQEP+ LS +SIGS  +D+N LFL P PS+SL+Q Q QLCE ++KEG E GEE
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGN 180
           YR+ SW+P CSVA +VPK+R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLEA 184
            LE+
Sbjct: 181 NLES 184

[Close]
BLAST of CmaCh04G027210 vs. NCBI nr
Match: gi|449449194|ref|XP_004142350.1| (PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 3.5e-94
Identity = 176/183 (96.17%), Postives = 181/183 (98.91%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVESI
Sbjct: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPFLEPTKVESI 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           VKNFASKQEPL LSL+SIGSLP+DNNILFLGPAPSISLLQFQSQLCEAMRKEGIE GEEY
Sbjct: 61  VKNFASKQEPLALSLSSIGSLPSDNNILFLGPAPSISLLQFQSQLCEAMRKEGIEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           RLGSWIPHC+VAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RLGSWIPHCAVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]
BLAST of CmaCh04G027210 vs. NCBI nr
Match: gi|658012435|ref|XP_008341484.1| (PREDICTED: uncharacterized protein LOC103404361 [Malus domestica])

HSP 1 Score: 323.6 bits (828), Expect = 2.3e-85
Identity = 153/183 (83.61%), Postives = 172/183 (93.99%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 3   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 62

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 63  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 122

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+C+VAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 123 RTDCWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 182

Query: 181 LEA 184
           +EA
Sbjct: 183 VEA 185

[Close]
BLAST of CmaCh04G027210 vs. NCBI nr
Match: gi|595926694|ref|XP_007215044.1| (hypothetical protein PRUPE_ppa012091mg [Prunus persica])

HSP 1 Score: 322.4 bits (825), Expect = 5.1e-85
Identity = 153/183 (83.61%), Postives = 173/183 (94.54%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           +K FASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQFQSQLCEA+++EG+E GEEY
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SW+P+C+VAQEVPK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]
BLAST of CmaCh04G027210 vs. NCBI nr
Match: gi|694442756|ref|XP_009348029.1| (PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri])

HSP 1 Score: 322.0 bits (824), Expect = 6.7e-85
Identity = 152/183 (83.06%), Postives = 171/183 (93.44%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MS+G+AIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++ FASKQEPL LS +SIGSLPNDNN+LFL P PS+SLLQFQSQLCEAM+KEG+E GEEY
Sbjct: 61  IRTFASKQEPLALSFSSIGSLPNDNNVLFLSPTPSVSLLQFQSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R   W+P+C+VAQE PK RMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGNT
Sbjct: 121 RTDCWVPYCAVAQEAPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

[Close]
BLAST of CmaCh04G027210 vs. NCBI nr
Match: gi|1009124658|ref|XP_015879189.1| (PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba])

HSP 1 Score: 321.6 bits (823), Expect = 8.7e-85
Identity = 153/183 (83.61%), Postives = 173/183 (94.54%), Query Frame = 1 

Query: 1   MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESI 60
           MSQG+AIELYFDPALENQVLKAWNVLARRQISTQLIE+ESRPHITLFSSPF+EP K+E++
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEMESRPHITLFSSPFIEPAKLENV 60

Query: 61  VKNFASKQEPLPLSLASIGSLPNDNNILFLGPAPSISLLQFQSQLCEAMRKEGIETGEEY 120
           ++NFASKQEPL LS +SIGSLP+DNN+LFL P PS+SLLQF SQLCEAM+KEG+E GEEY
Sbjct: 61  IRNFASKQEPLSLSFSSIGSLPSDNNVLFLAPTPSMSLLQFHSQLCEAMKKEGVEIGEEY 120

Query: 121 RLGSWIPHCSVAQEVPKARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT 180
           R  SWIP+C+VAQEVP+ARMAEAFCVLRDLKLPV+GYA+DIGLVEFSPVRELFSFVLGN 
Sbjct: 121 RQDSWIPYCAVAQEVPRARMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNN 180

Query: 181 LEA 184
           +EA
Sbjct: 181 VEA 183

The following BLAST results are available for this feature:
BLAST of CmaCh04G027210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G027210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVB2_CUCSA2.5e-9496.17Uncharacterized protein OS=Cucumis sativus GN=Csa_5G630940 PE=4 SV=1[more]
M5X3Z2_PRUPE3.6e-8583.61Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1[more]
B9RUD3_RICCO1.5e-8384.07Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0851860 PE=4 SV... [more]
D7TWT6_VITVI2.2e-8282.51Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=... [more]
A5AGR0_VITVI1.8e-8181.97Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002643 PE=4 SV=1[more]
BLAST of CmaCh04G027210 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G40190.16.7e-7569.95 RNA ligase/cyclic nucleotide phosphodiesterase family protein[more]
AT3G28140.13.8e-7070.11 RNA ligase/cyclic nucleotide phosphodiesterase family protein[more]
BLAST of CmaCh04G027210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449449194|ref|XP_004142350.1|3.5e-9496.17PREDICTED: uncharacterized protein LOC101208638 [Cucumis sativus][more]
gi|658012435|ref|XP_008341484.1|2.3e-8583.61PREDICTED: uncharacterized protein LOC103404361 [Malus domestica][more]
gi|595926694|ref|XP_007215044.1|5.1e-8583.61hypothetical protein PRUPE_ppa012091mg [Prunus persica][more]
gi|694442756|ref|XP_009348029.1|6.7e-8583.06PREDICTED: uncharacterized protein LOC103939647 [Pyrus x bretschneideri][more]
gi|1009124658|ref|XP_015879189.1|8.7e-8583.61PREDICTED: uncharacterized protein LOC107415389 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009097cNuc_Pdiesterase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016874 ligase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G027210.1CmaCh04G027210.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009097RNA ligase/cyclic nucleotide phosphodiesteraseGENE3DG3DSA:3.90.1140.10coord: 3..132
score: 5.
IPR009097RNA ligase/cyclic nucleotide phosphodiesteraseunknownSSF55144LigT-likecoord: 5..155
score: 4.97
NoneNo IPR availablePANTHERPTHR36039FAMILY NOT NAMEDcoord: 1..183
score: 4.7E
NoneNo IPR availablePANTHERPTHR36039:SF2GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15coord: 1..183
score: 4.7E
NoneNo IPR availablePFAMPF135632_5_RNA_ligase2coord: 41..155
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G027210Cucsa.158920Cucumber (Gy14) v1cgycmaB0441
CmaCh04G027210Cla010386Watermelon (97103) v1cmawmB652
CmaCh04G027210Csa5G630940Cucumber (Chinese Long) v2cmacuB723
CmaCh04G027210MELO3C021519Melon (DHL92) v3.5.1cmameB634
CmaCh04G027210ClCG09G018710Watermelon (Charleston Gray)cmawcgB608
CmaCh04G027210CSPI05G28290Wild cucumber (PI 183967)cmacpiB730
CmaCh04G027210CmoCh04G028530Cucurbita moschata (Rifu)cmacmoB729
CmaCh04G027210Cp4.1LG13g08870Cucurbita pepo (Zucchini)cmacpeB705
CmaCh04G027210MELO3C021519.2Melon (DHL92) v3.6.1cmamedB720
CmaCh04G027210CsaV3_5G037360Cucumber (Chinese Long) v3cmacucB0860
CmaCh04G027210Cla97C09G180210Watermelon (97103) v2cmawmbB797
CmaCh04G027210Bhi06G000406Wax gourdcmawgoB0839
CmaCh04G027210Carg04418Silver-seed gourdcarcmaB0967
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G027210Cucurbita maxima (Rimu)cmacmaB275
CmaCh04G027210Cucurbita maxima (Rimu)cmacmaB324
CmaCh04G027210Cucurbita maxima (Rimu)cmacmaB409
CmaCh04G027210Cucumber (Gy14) v1cgycmaB0939
CmaCh04G027210Cucurbita moschata (Rifu)cmacmoB684
CmaCh04G027210Cucurbita moschata (Rifu)cmacmoB692
CmaCh04G027210Wild cucumber (PI 183967)cmacpiB711
CmaCh04G027210Cucumber (Chinese Long) v2cmacuB704
CmaCh04G027210Melon (DHL92) v3.5.1cmameB685
CmaCh04G027210Watermelon (Charleston Gray)cmawcgB610
CmaCh04G027210Watermelon (97103) v1cmawmB655
CmaCh04G027210Cucurbita pepo (Zucchini)cmacpeB721
CmaCh04G027210Bottle gourd (USVL1VR-Ls)cmalsiB651
CmaCh04G027210Bottle gourd (USVL1VR-Ls)cmalsiB655
CmaCh04G027210Bottle gourd (USVL1VR-Ls)cmalsiB658
CmaCh04G027210Cucumber (Gy14) v2cgybcmaB132
CmaCh04G027210Cucumber (Gy14) v2cgybcmaB418
CmaCh04G027210Cucumber (Gy14) v2cgybcmaB647
CmaCh04G027210Melon (DHL92) v3.6.1cmamedB750
CmaCh04G027210Melon (DHL92) v3.6.1cmamedB769
CmaCh04G027210Silver-seed gourdcarcmaB0374
CmaCh04G027210Cucumber (Chinese Long) v3cmacucB0818
CmaCh04G027210Cucumber (Chinese Long) v3cmacucB0839
CmaCh04G027210Watermelon (97103) v2cmawmbB714