CmoCh04G020670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionstructural constituent of ribosome;protein binding
LocationCmo_Chr04 : 11796823 .. 11800077 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTTAGTCATAAATTTGGAGAGTTTGCTTCGACACGGAAACGAAGACTTTCGAGAACAAATATTGGACGGGGAAAAAAAAGGGGAGAAAGTCAAGGCGCATATGGCACGAAAAGGAAATCTGATTTCGATAAGACTTGATCTAAATCGTAGTTCAGATTCAAGTTGGTTCAGTGAGGGCGATCGCGAAAGTCACCGAATAGGTAAGTCTTTTCCTTTTGTCCTATATTGAAAATAAAAAAAGCGTGGGAGGACATTGCACAGATGTCCAGGACGGATACAACTTTTTCTAACATTAGAAGACCTCTGGAAGACACCCGGGACCAGAGCATGTCGTGAAAGAAGCACACTGGCTGTGCTTCAATCGTGTTTCTGGGGCATAGTTGAATGTAGATATCATGAACGCGAGGTGCAAGATACCAGGCCAAGAAACCCGGGCAACCACTACCCTATGTGCTGATCGCTAGCGCATCCAAGGCCCCGACGCCCAGTAGAGCTGGAGAGACCTAGCTGGATCTGAGAAGTGCTAATTCGGTTCGTCTCGACTTCATTTAAGAACACCCCCCTTGGAATCCACAAGAAAACAAGTGCTATCAGATCAGTGAATAAACCCCTTCAACAAATAAGAGTTTTCAGTGGAACCGGTGAATCACGCGAGCAGGTTAGATGCATGCGTGGGACAGAGGGCTCATAGTACCCGTTAGCGCAGCTATACAGTGGAAGGGAAGGAGCCTAAATCAACCCCCCCTTTTTTTCTTTGATAAACAACACAACACAAAGAGATTAGACTCTCGGATGAGACTAAGCAGCCATCGACCGTTACGACGTGCCCCTGACCCATCTTGATTAAGACCAAACAAACAAAACCTATAAAAAATAGAGTAGAGCCTAGTTTAAGCTCTCAAACAAATAAATGAGAGAATGGAAAATGATGAGAATATCCACTAGTAGGGATATGTATAGATGGAGAGTCTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGAGAGGAGCGAAGCAATGAGGCACACAATGAATGAGCGAAGCAACTTTACCGGAAGGGTGAGGTGAATGAGCGAATGAATCAGTTTCCCCTTTTTCAATAACAAAAAAGGAAAGAAAGAAGGACTTGACTTATTAGAATATTAGTAAAAGCGCCTTAGCCTATCCCTCGATATAGGAAGGGGCCTTTTCTTGCTCGTTAGCGCTCCCTTACCCTTATTTATCAACCTGACTCTGACTACTAATAATAATGAAGGGGCTTCTTTCTTCAAATATCCTATCAAGTTGGGGCTGAAAAGCTTTGAGTTTAGGGGTGCACAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACACCTCTTTCTTCTGTGAGGGAGTTGCACGAAACCAACCCGCTCCCGCACCCGATCAAGTACCTGTTGCTTTGCTGGTAGGCCCACTTAGGTTAGGGTTGTCCCTCAGTTCTTACCAACCTCTAGTGTGTAATCGATATGTTGCTAGCTTCAACTCGGTGGAATAAGAATAATTGATTCCCTTGTCTATTTCTTATTCATTCATAGGGTTCGGGCGGTGCGTGCTCCTTTCTCAACCTAGAACAACTCTGAACGTTAGGGAAGATAAGGGAAGACCACCTGAGCAAACCGATCGAAGGGACTTGACTTATTCGAACCGAAGGATAGCAGCTTCAAACTCAGCCTATCACGAGTAGCTTCGCTACTTGATCGGCGGGGAGGAGCATCTCAAAGTATGGGTAATAAGATAAGGAATCACTACAAGGGGAATAAGATTCGAATTACCTTGTTGATCGAATATCTCAAGGCAAGAAGAACATTTGATTGAGATTCAAATCACTTCACAAGCAAGATTGATCATGTCTAGCTTGAATGATTCTTGTTGATCAAATATCTCAAGGCAAGAACACTTGCTTGAGATTCGAATCACTCCACAAGCAAGATTGATCATGTCGAGCTTGAATGATTCTACATGCAACCTAAACTACATAGAATTGCAAAGAAATTTAGCCATTGGCTAAAGAAAAGCACAAATGCTTCTTTTACTATATTTTCCAAGTCTTCTTATAAATACAACATACAAGGCTTTATATAGCCTCAAAAATGAAACTATTAAATCCATTCCAAGAGTTGTAACATTTATACTTTATGGCCATAATTAGCCATTATGTGAATGTAACTTAAATAAATAAAAAGTCTTAAAATACATTAATGACATACAATAACTCTCAATTGTAACCCACCCAAAATTTATAACAATCAAACTTCATTCTTCTTCAATGTGGCATGAATTGAAACATCTTTTGATAATTTTGACAACCTTTTCTTCACATCTTCATTGAAGTATATTGTATGATTGATGTCTCTTGGTTCATATCAATGGGGCAAAGGATCAAGCGCTTTGACCTTGTCTCCCAGGATCCACCACAGTTTTGGTTTGAGAGTCGTGTGACGGGTGACTATCCAACACGGTTCGGAGAGCACTTTGAGTCTGCATTGGTGAATTCTCCTATCAAGAAAGAAGTGGCTCTTCCCACGGCGGAGTCGCCATTAACTCTATTTATTATTATGGTAAAGCACTGTATCAAGATGTCAATCTGAGATCTTATTTTGGTTCAATACGTCCACCTACGAGATTGACCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATGTCAGCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA

mRNA sequence

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA

Coding sequence (CDS)

ATGGAAAAACTTCTGTTCGTTGTAAGATCATTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCATCGACCACGAGGACTGGAACGACGCGCAAAATCCAAACCCGAAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATTGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACAAAGTGAGAGCCTGGGAGGCAGAGAAAAGAGTGGAGTCGATGATCAAGCTCGACGACCGGGAAAAGCAAAATGAAATTAGGATTTGGCTGAAAAAGAAGCAAGACTATGAATTCCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCATCGGGGCCTTCAAGCATCCGAATATGCTGAAGCTGTAAATTACATAGCGTTCCTGATCGAAAATGATGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCCTCCGACGGCCCGGCGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCATGA
Homology
[Close]
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 218.0 bits (554), Expect = 8.7e-56
Identity = 117/175 (66.86%), Postives = 129/175 (73.71%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+R  KS+P K++ RWW FGKVGPIGCLHS+DDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+V    A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSKSL      
Sbjct: 120 NEVGGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  +N IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 180 KHPKYAGVLNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTPPAVRP 233

[Close]
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.9e-55
Identity = 119/175 (68.00%), Postives = 129/175 (73.71%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRW AFGKVGPIGCLHSSD TEEER
Sbjct: 59  CIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEER 118

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR   A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSKSL      
Sbjct: 119 NEVRGRGAGKRVES-IRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAF 178

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA   N IAFLIENDDSFRK  LFKFFFP +S         LK   P   P
Sbjct: 179 KHPKYAGIENDIAFLIENDDSFRKTNLFKFFFPKKSRSDRPTSHLLKRTLPAVRP 232

[Close]
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-52
Identity = 115/176 (65.34%), Postives = 126/176 (71.59%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RP  L+RR KS+P KD+GRWWAFGKVGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR   A KRVES+    DREKQNEIRIW KK Q Y +HDR+PSRKKN SKSL      
Sbjct: 120 NEVRGRGAGKRVESI----DREKQNEIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFF-PNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSF K KLFKFFF P +S         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFIKTKLFKFFFLPKKSRSDGPTSHLLKRTLPAVRP 231

[Close]
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 109/157 (69.43%), Postives = 122/157 (77.71%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR PS KKNLSK L     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKLLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Sbjct: 180 FKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKS 215

[Close]
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match: RT03_BRANA (Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.4e-50
Identity = 107/157 (68.15%), Postives = 121/157 (77.07%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAF-GKVGPIGCLHSSDDTEEE 74
           CI+LHFPK TFIHFFLP RPR L+RR K++P K++GRWW   GK GPIGCL   DDTEEE
Sbjct: 60  CILLHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTPGKAGPIGCLR--DDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR+PS KKNLSKSL     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +Y   VN IAFLIENDDSFRK KLFKFFFP +S
Sbjct: 180 FKHPKYGGVVNDIAFLIENDDSFRKTKLFKFFFPKKS 213

[Close]
BLAST of CmoCh04G020670 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-67
Identity = 136/175 (77.71%), Postives = 142/175 (81.14%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSKSL      
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 180

[Close]
BLAST of CmoCh04G020670 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.3e-66
Identity = 135/175 (77.14%), Postives = 141/175 (80.57%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSK L      
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 234

[Close]
BLAST of CmoCh04G020670 vs. TrEMBL
Match: D5I3A1_CITLA (Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.2e-58
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KSKP K++GRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR  EAEKRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSK L      
Sbjct: 120 NEVRGREAEKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 233

[Close]
BLAST of CmoCh04G020670 vs. TrEMBL
Match: E5DMH2_SCHMO (Ribosomal protein S3 (Fragment) OS=Schinus molle GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 116/156 (74.36%), Postives = 129/156 (82.69%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW FGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+V+ W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDR PS+KKNLSKSL      
Sbjct: 66  NEVKGWGARKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRPPSKKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKS 160

[Close]
BLAST of CmoCh04G020670 vs. TrEMBL
Match: B0L4P6_9MAGN (Ribosomal protein S3 (Fragment) OS=Itea virginica GN=rps3 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-57
Identity = 122/175 (69.71%), Postives = 133/175 (76.00%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRWWAFGKVGPIGCLHSSD TEEER
Sbjct: 7   CIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDGTEEER 66

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSL--HRGL 134
            +VR W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS+KKNLSKSL      
Sbjct: 67  KEVRGWGAGKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSKKKNLSKSLWVSGAF 126

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 127 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 180

[Close]
BLAST of CmoCh04G020670 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-53
Identity = 110/157 (70.06%), Postives = 123/157 (78.34%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWW-AFGKVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW  FGK GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RG 134
           RN+VR   A KRVES I+LDDR+KQNEIR W KKKQ Y +HDR PS KKNLSKSL     
Sbjct: 120 RNEVRGRGARKRVES-IRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGA 179

Query: 135 LQASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
            +  +YA  VN IAFLIENDDSF+K KLFK FF N+S
Sbjct: 180 FKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKS 215

[Close]
BLAST of CmoCh04G020670 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 263.1 bits (671), Expect = 3.8e-67
Identity = 136/175 (77.71%), Postives = 142/175 (81.14%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSKSL      
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 180

[Close]
BLAST of CmoCh04G020670 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 260.8 bits (665), Expect = 1.9e-66
Identity = 135/175 (77.14%), Postives = 141/175 (80.57%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLP RPRGL+RRAKSKP KDQGRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           NKVR  EAEKRVESMI+LDDREKQNEIRIW KKKQDY +HDRSPSRKKNLSK L      
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK +LFKFFFPNQS         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRSDGPTSHLLKRTLPAVRP 234

[Close]
BLAST of CmoCh04G020670 vs. NCBI nr
Match: gi|295311662|ref|YP_003587231.1| (ribosomal protein S3 [Citrullus lanatus])

HSP 1 Score: 233.4 bits (594), Expect = 3.2e-58
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KSKP K++GRWWAFGKVGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+VR  EAEKRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS KKNLSK L      
Sbjct: 120 NEVRGREAEKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLSKLLRVSGAF 179

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 180 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 233

[Close]
BLAST of CmoCh04G020670 vs. NCBI nr
Match: gi|302749021|gb|ADL63990.1| (ribosomal protein S3, partial (mitochondrion) [Schinus molle])

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-57
Identity = 116/156 (74.36%), Postives = 129/156 (82.69%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR K++P K++GRWW FGKVGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTFGKVGPIGCLHSSDDTEEER 65

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSLH--RGL 134
           N+V+ W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDR PS+KKNLSKSL      
Sbjct: 66  NEVKGWGARKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRPPSKKKNLSKSLRVSGAF 125

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQS 169
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S
Sbjct: 126 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKS 160

[Close]
BLAST of CmoCh04G020670 vs. NCBI nr
Match: gi|130076576|gb|ABO31946.1| (ribosomal protein S3 [Itea virginica])

HSP 1 Score: 231.1 bits (588), Expect = 1.6e-57
Identity = 122/175 (69.71%), Postives = 133/175 (76.00%), Query Frame = 1 

Query: 15  CIILHFPKITFIHFFLPHRPRGLERRAKSKPEKDQGRWWAFGKVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLP RPR L+RR KS+P K++GRWWAFGKVGPIGCLHSSD TEEER
Sbjct: 7   CIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDGTEEER 66

Query: 75  NKVRAWEAEKRVESMIKLDDREKQNEIRIWLKKKQDYEFHDRSPSRKKNLSKSL--HRGL 134
            +VR W A KRVES I+LDDREKQNEIRIW KKKQ Y +HDRSPS+KKNLSKSL      
Sbjct: 67  KEVRGWGAGKRVES-IRLDDREKQNEIRIWPKKKQRYGYHDRSPSKKKNLSKSLWVSGAF 126

Query: 135 QASEYAEAVNYIAFLIENDDSFRKMKLFKFFFPNQSPPTARRVIYLKEPSPQCAP 188
           +  +YA  VN IAFLIENDDSFRK KLFKFFFP +S         LK   P   P
Sbjct: 127 KHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSRSDGPTSHLLKRTLPAVRP 180

The following BLAST results are available for this feature:
BLAST of CmoCh04G020670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT03_OENBE8.7e-5666.86Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2[more]
RT03_PETHY1.9e-5568.00Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1[more]
RT03_MAIZE2.0e-5265.34Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1[more]
RT03_ARATH1.3e-5169.43Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3[more]
RT03_BRANA9.4e-5068.15Ribosomal protein S3, mitochondrial OS=Brassica napus GN=RPS3 PE=3 SV=1[more]
BLAST of CmoCh04G020670 vs. TrEMBL
Match NameE-valueIdentityDescription
E5DM03_CUCPE2.6e-6777.71Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
D5I3F1_CUCPE1.3e-6677.14Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1[more]
D5I3A1_CITLA2.2e-5871.43Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1[more]
E5DMH2_SCHMO1.1e-5774.36Ribosomal protein S3 (Fragment) OS=Schinus molle GN=rps3 PE=3 SV=1[more]
B0L4P6_9MAGN1.1e-5769.71Ribosomal protein S3 (Fragment) OS=Itea virginica GN=rps3 PE=3 SV=1[more]
BLAST of CmoCh04G020670 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00090.11.5e-5370.06ATMG00090.1 structural constituent of ribosome;protein binding[more]
BLAST of CmoCh04G020670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|302748681|gb|ADL63821.1|3.8e-6777.71ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo][more]
gi|295311706|ref|YP_003587365.1|1.9e-6677.14ribosomal protein S3 [Cucurbita pepo][more]
gi|295311662|ref|YP_003587231.1|3.2e-5871.43ribosomal protein S3 [Citrullus lanatus][more]
gi|302749021|gb|ADL63990.1|1.6e-5774.36ribosomal protein S3, partial (mitochondrion) [Schinus molle][more]
gi|130076576|gb|ABO31946.1|1.6e-5769.71ribosomal protein S3 [Itea virginica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020670.1CmoCh04G020670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35928FAMILY NOT NAMEDcoord: 58..179
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020670CmaCh04G019540Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G020670CmaCh04G020330Cucurbita maxima (Rimu)cmacmoB741
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020670Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020670Watermelon (97103) v1cmowmB733
CmoCh04G020670Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020670Cucurbita pepo (Zucchini)cmocpeB680
CmoCh04G020670Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020670Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020670Watermelon (97103) v2cmowmbB699
CmoCh04G020670Wax gourdcmowgoB0902