CmaCh04G019540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G019540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	structural constituent of ribosome;protein binding
Location	Cma_Chr04 : 10924288 .. 10925871 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGATACTGCCCTTTGGCTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGACTGAACTGATGCGCAAAATCCAAACCCGGAAAGGATCAGGGCCGGTGGTGGGCATTTGGGAAAGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGACAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGATCGGGAAAAGCAAAACGAAATGAGGATTTGGTCGAAAAAGAAGGAACGCTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGAAGTTGTAAATGACATAGCGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTTCGACGGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAATAAAATGCATTTTGACCCTGTGGTAGTTCTCAATCATTTCGTGGCACCGGGCGTGGCTGAACCATCTACGATGGGGGGAGCAAATACACAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCGCATCATTTTTTTTGTAGAAAGCTCGACCCGCGAGAAAAAGTGTTTGGCCGAACCCAAAAAGAGGTTGACCCACTTCATTCACCAAGCAAATGATCTTCGTTTTGCGGGAACAACAAAAACAACCATCTCGCTTTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAAGGGATGGGGTTGGGATGTATAAAAACCTTTTTTTTTAGGATACCCAGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAACTCTAATTTGAACGAAGTGCAAAAAATGCGATCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAATGAGTCAGTCAAGATCAAATATGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCATATATGTTGTTCAGGTCGATCAGAAGGCGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTACGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGTATTTCATATAAAAAACAAAAAAAGGAACGTGTTATATTCAAAATGTACGAAATA

mRNA sequence

GTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGATACTGCCCTTTGGCTTTCGTCTTGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGACAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGATCGGGAAAAGCAAAACGAAATGAGGATTTGGTCGAAAAAGAAGGAACGCTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGAAGTTGTAAATGACATAGCGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTTCGACGGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAATAAAATGCATTTTGACCCTGTGGTAGTTCTCAATCATTTCGTGGCACCGGGCGTGGCTGAACCATCTACGATGGGGGGAGCAAATACACAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCGCATCATTTTTTTTGTAGAAAGCTCGACCCGCGAGAAAAAGTGTTTGGCCGAACCCAAAAAGAGGTTGACCCACTTCATTCACCAAGCAAATGATCTTCGTTTTGCGGGAACAACAAAAACAACCATCTCGCTTTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAAGGGATGGGGATACCCAGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAACTCTAATTTGAACGAAGTGCAAAAAATGCGATCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAATGAGTCAGTCAAGATCAAATATGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCATATATGTTGTTCAGGTCGATCAGAAGGCGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTACGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGTATTTCATATAAAAAACAAAAAAAGGAACGTGTTATATTCAAAATGTACGAAATA

Coding sequence (CDS)

GTCAATCTGAGATCTTATTTCGGTTCGATACGTCCACCTACGATACTGCCCTTTGGCTTTCGTCTTGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGACAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGATCGGGAAAAGCAAAACGAAATGAGGATTTGGTCGAAAAAGAAGGAACGCTATGGATACCATGACCGATCACCATCGAGAAAGAAGAATCTTTCTAAATCACTTCGCGTCAGCGGGGCCTTCAAGCATCCGAAATATGCCGAAGTTGTAAATGACATAGCGTTCCTGATCGAAAATGACGACTCCTTCAGAAAAATGAAGTTATTCAAGTTCTTTTTCCCAAATCAGTCCCGCTTCGACGGCCCGACGAGTCATCTACTTAAAAGAACCCTCCCCGCAGTGCGCCCCTCCTTGAATTATTCGGTCATGCAATACTTATTGAATACAAAGAATAAAATGCATTTTGACCCTGTGGTAGTTCTCAATCATTTCGTGGCACCGGGCGTGGCTGAACCATCTACGATGGGGGGAGCAAATACACAGGGAAGAAGCTTAGATAAGAGAATACGTTCTCGCATCATTTTTTTTGTAGAAAGCTCGACCCGCGAGAAAAAGTGTTTGGCCGAACCCAAAAAGAGGTTGACCCACTTCATTCACCAAGCAAATGATCTTCGTTTTGCGGGAACAACAAAAACAACCATCTCGCTTTTTCCTTTCTTTGGTGCTACCTTTTTCTTTCCAAGGGATGGGGATACCCAGGAACAACTCCTAGGTCAATTAAGGATCAAATGTTGGAACCTCATGGGTAAGGATAAGGTAATAGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATTGATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTATGGGTACAACTCTAATTTGAACGAAGTGCAAAAAATGCGATCTTTGTTGTCTAATAGAACAAAGACTAATACCTTAAATGAGTCAGTCAAGATCAAATATGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCTTTTCAACTGAGAAACAAAACAAGATCATTTCGTTCCATTTTGACTAAAATAGTGAAGGATATTCCATTAGTAATGAAAAAAGGGGTTGAGGGGATCCATATATGTTGTTCAGGTCGATCAGAAGGCGCGGAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATCGATTATGCTCCTACGGAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGTATTTCATATAAAAAACAAAAAAAGGAACGTGTTATATTCAAAATGTACGAAATA

Protein sequence

VNLRSYFGSIRPPTILPFGFRLVGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRFDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPFFGATFFFPRDGDTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASPIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMYEI

Homology

[Close]

BLAST of CmaCh04G019540 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 765.0 bits (1974), Expect = 4.8e-220
Identity = 406/515 (78.83%), Postives = 422/515 (81.94%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKA 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHS+DDTEEERNEV GR A KRVESIRLDDREKQNE+RIW KKK+ Y
Sbjct: 96  RWWEFGKVGPIGCLHSNDDTEEERNEVGGRGAGKRVESIRLDDREKQNEIRIWPKKKQGY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHDRSPS KKNLSKSLRVSGAFKHPKYA V+NDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDRSPSIKKNLSKSLRVSGAFKHPKYAGVLNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSHLLKRT PAVRPSLNYSVMQY LNTKN+MHFDP+VVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHLLKRTPPAVRPSLNYSVMQYYLNTKNQMHFDPLVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           N QGRS + RIRSRI FFVESST EKK LAE KK L HFI Q NDLRFAG TKTTISLFP
Sbjct: 276 NRQGRSNELRIRSRIAFFVESSTSEKKSLAEDKKGLPHFIRQENDLRFAGRTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          D +EQLLGQLRIKCW LMGKDKV+ELIEKFIDLGGIGE
Sbjct: 336 FFGATFFFPRDGVGVYKHLFFEDAREQLLGQLRIKCWKLMGKDKVMELIEKFIDLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIE+MIEIILRNRRIPYGYNS LNEV+KMRSLLSNRTKTNT+ ESVKIK VYQSASP
Sbjct: 396 LIKGIEIMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTIIESVKIKSVYQSASP 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 461
           IAQDISFQ RNK RSFRSI ++IVKDIPLVMKKGVEGI ICCSGRS+GAEIARTECGKYG
Sbjct: 456 IAQDISFQPRNKRRSFRSIFSQIVKDIPLVMKKGVEGIRICCSGRSKGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 758.8 bits (1958), Expect = 3.5e-218
Identity = 395/464 (85.13%), Postives = 409/464 (88.15%), Query Frame = 1


Query: 20  FRLVGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERYGYHD 79
           F  VGPIGCLHSSD TEEERNEV GR A KRVESIRLDDREKQNE+RIW KKK+ YGYHD
Sbjct: 99  FGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQNEIRIWPKKKQGYGYHD 158

Query: 80  RSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRFDGP 139
           RSPS KKNLSKSLRVSGAFKHPKYA + NDIAFLIENDDSFRK  LFKFFFP +SR D P
Sbjct: 159 RSPSIKKNLSKSLRVSGAFKHPKYAGIENDIAFLIENDDSFRKTNLFKFFFPKKSRSDRP 218

Query: 140 TSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQG 199
           TSHLLKRTLPAVRPSLNYSVMQYLLNTKNK+HFDPVVVLNHFVAPGVAEPSTMGGAN QG
Sbjct: 219 TSHLLKRTLPAVRPSLNYSVMQYLLNTKNKIHFDPVVVLNHFVAPGVAEPSTMGGANAQG 278

Query: 200 RSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPFFGA 259
           RSLDKRI S I FFVE+ST EKKCLAE KKR+THFI QANDLRFAGTTKTTISLFPFFGA
Sbjct: 279 RSLDKRIASCIAFFVENSTSEKKCLAEAKKRVTHFIRQANDLRFAGTTKTTISLFPFFGA 338

Query: 260 TFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGELIKG 319
           TFFFPRDG          D +EQLLGQLR KCWNLMGKDKV+ELIEKFIDL  IGELI+G
Sbjct: 339 TFFFPRDGVGVYNNLFFEDAREQLLGQLRRKCWNLMGKDKVMELIEKFIDLNRIGELIRG 398

Query: 320 IEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASPIAQD 379
           IEMMIEIILRNRRIPYGYN  LNEV+KMRSLL NRT TNTL ESVKIK VYQSASPIAQD
Sbjct: 399 IEMMIEIILRNRRIPYGYNYYLNEVKKMRSLLYNRTNTNTLIESVKIKSVYQSASPIAQD 458

Query: 380 ISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYGKTSR 439
           ISFQ RNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGR EGAEIARTECGKYGKTSR
Sbjct: 459 ISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYGKTSR 518

Query: 440 NVFNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMYEI 474
           NVFNQKIDYAP EVSTRYGI GVKV ISY K+KK R I + YEI
Sbjct: 519 NVFNQKIDYAPAEVSTRYGISGVKVWISYSKKKKGRAISETYEI 562

[Close]

BLAST of CmaCh04G019540 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 723.8 bits (1867), Expect = 1.2e-207
Identity = 399/529 (75.43%), Postives = 413/529 (78.07%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYF SIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFSSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSS+ TEEERNEV GR A KRVESI   DREKQNE+RIW KK +RY
Sbjct: 96  RWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFF-PNQS 180
           GYHDR+PSRKKN SKSLRVSGAFKHPKYA VVNDIAFLIENDDSF K KLFKFFF P +S
Sbjct: 156 GYHDRTPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFIKTKLFKFFFLPKKS 215

Query: 181 RFDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGG 240
           R DGPTSHLLKRTLPAVRPSLNYSVMQY  NTKNKMHFDPVVVLNHFVAPGVAEPSTMGG
Sbjct: 216 RSDGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGG 275

Query: 241 ANTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLF 300
           A  +G SLDKRIRSRI FFVESST +KKCLA  KKRL HFI QANDLRFAGTTKTTISLF
Sbjct: 276 A--KGGSLDKRIRSRIAFFVESSTSDKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLF 335

Query: 301 PFFGATFFFPRDGD----------TQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIG 360
           PFFGATFFF RDG            +EQLLGQLRIKC NLMGKDKV+ELIEKFIDLG IG
Sbjct: 336 PFFGATFFFSRDGVGVYNNPFYEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIDLGRIG 395

Query: 361 ELIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSAS 420
           +LIKGIEMMIEIILR RRIPYGYNS LNEVQKMRS LSNRT TNTL ESVKIK VYQSAS
Sbjct: 396 KLIKGIEMMIEIILRKRRIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSAS 455

Query: 421 PIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKY 474
            IAQDISFQLRN   SFRSI +KIVKDIPL+M KGVEGI ICCSGR  GAEIARTECGKY
Sbjct: 456 LIAQDISFQLRNNPISFRSIFSKIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKY 515

[Close]

BLAST of CmaCh04G019540 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 681.8 bits (1758), Expect = 5.4e-195
Identity = 383/528 (72.54%), Postives = 395/528 (74.81%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYF SIRPPTIL FGFRL                                      
Sbjct: 36  VNLRSYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSS+ TEEERNEV GR A KRVESI   DREKQNE+RIW KK +RY
Sbjct: 96  RWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHDRSPSRKKN SKSLRVSGAFKHPKYA VVNDIAFLIEND                  
Sbjct: 156 GYHDRSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIEND------------------ 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
             GPTSHLLKRTLPAVRPSLNYSVMQY  NTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 --GPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
             +G SLDKRIRSRI FFVESST EKKCLA  KKRL HFI QANDLRFAGTTKTTISLFP
Sbjct: 276 --KGGSLDKRIRSRIAFFVESSTSEKKCLARAKKRLIHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDGD----------TQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG            +EQLLGQLRIKC NLMGKDKV+ELIEKFI LG IG+
Sbjct: 336 FFGATFFFPRDGVGVYNNPFFEYAREQLLGQLRIKCRNLMGKDKVMELIEKFIYLGRIGK 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILR R IPYGYNS LNEVQKMRS LSNRT TNTL ESVKIK VYQSAS 
Sbjct: 396 LIKGIEMMIEIILRKRIIPYGYNSYLNEVQKMRSFLSNRTNTNTLIESVKIKSVYQSASL 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQL N   SFRSI ++IVKDIPL+M KGVEGI ICCSGR  GAEIARTECGKYG
Sbjct: 456 IAQDISFQLGNNPISFRSIFSQIVKDIPLIMPKGVEGIRICCSGRLGGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 646.0 bits (1665), Expect = 3.3e-184
Identity = 348/462 (75.32%), Postives = 376/462 (81.39%), Query Frame = 1


Query: 20  FRLVGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERYGYHD 79
           F   GPI CLHSSDDTEEERNEV GR A KRVESIRLDDR+KQNE+R W KKK+RYGYHD
Sbjct: 101 FGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHD 160

Query: 80  RSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRFDGP 139
           R PS KKNLSK LR+SGAFKHPKYA VVNDIAFLIENDDSF+K KLFK FF N+SR DGP
Sbjct: 161 RLPSIKKNLSKLLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGP 220

Query: 140 TSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQG 199
           TS+L  RTLPAVRPSLN+ VMQY  NTKN+++FDPVVVLNHFVAPG AEPSTMG AN QG
Sbjct: 221 TSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQG 280

Query: 200 RSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPFFGA 259
           RSL KRIRSRI FFVES T EKKCLAE K RLTHFI  ANDLRFAGTTKTTISLFPFFGA
Sbjct: 281 RSLQKRIRSRIAFFVESLTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGA 340

Query: 260 TFFFPRDG-------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGELIKGIEM 319
           TFFF RDG       D +EQLL QLR+KCWNL+GKDK++ELIEK  +LGGI ELIK I+M
Sbjct: 341 TFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDM 400

Query: 320 MIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASPIAQDISF 379
           MIEIILR R IPY YNS   EV+KMRS LSNRT T TL ESVKIK VYQSAS IAQDISF
Sbjct: 401 MIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASLIAQDISF 460

Query: 380 QLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGR-SEGAEIARTECGKYGKTSRNV 439
           QL+NK RSF SI  KIVK+IP    KGVEGI IC SGR  + AE A+T+C K+ KTS NV
Sbjct: 461 QLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSCNV 520

Query: 440 FNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMYEI 474
           FN KIDYAP EV TRYGILGVKV ISY ++K  R I + YEI
Sbjct: 521 FNHKIDYAPVEVFTRYGILGVKVWISYSQKKGRRAISETYEI 556

[Close]

BLAST of CmaCh04G019540 vs. TrEMBL
Match: D5I3A1_CITLA (Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1)

HSP 1 Score: 823.5 bits (2126), Expect = 1.3e-235
Identity = 437/528 (82.77%), Postives = 445/528 (84.28%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSSDDTEEERNEV GREAEKRVESIRLDDREKQNE+RIW KKK+RY
Sbjct: 96  RWWAFGKVGPIGCLHSSDDTEEERNEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHDRSPS KKNLSK LRVSGAFKHPKYA VVNDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDRSPSIKKNLSKLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSHLLKRTLPAVRPSLNY VMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHLLKRTLPAVRPSLNYLVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           NTQGRSLDKRIRSRI FFVES T EKKCLAE KKRLTHFI QANDLRFAGTTKTTISLFP
Sbjct: 276 NTQGRSLDKRIRSRIAFFVESLTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          DT+EQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE
Sbjct: 336 FFGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILRNRRIPYGYNS LNEV+KMRSLLSNRTKTNTL ESVKIK VYQSAS 
Sbjct: 396 LIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVKIKSVYQSASL 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQLRNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGR EGAEIARTECGKYG
Sbjct: 456 IAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 813.9 bits (2101), Expect = 1.0e-232
Identity = 437/530 (82.45%), Postives = 444/530 (83.77%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVES-IRLDDREKQNEMRIWSKKKER 120
                  VGPIGCLHSSDDTEEERN+V GREAEKRVES IRLDDREKQNE+RIW KKK+ 
Sbjct: 96  RWWAFGKVGPIGCLHSSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQD 155

Query: 121 YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQS 180
           YGYHDRSPSRKKNLSK LRVSGAFKHPKYA VVNDIAFLIENDDSFRK +LFKFFFPNQS
Sbjct: 156 YGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQS 215

Query: 181 RFDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGG 240
           R DGPTSHLLKRTLPAVRPSLNY VMQYLLNTKNKMHFDPV VLNHFVAPGVAEPSTMGG
Sbjct: 216 RSDGPTSHLLKRTLPAVRPSLNYLVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGG 275

Query: 241 ANTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLF 300
           ANTQGRSLDKRIRSRI FFVES T EKKCLAEPKKRLTHFI QANDLRFAGTTKTTISLF
Sbjct: 276 ANTQGRSLDKRIRSRIAFFVESLTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLF 335

Query: 301 PFFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGK-DKVIELIEKFIDLGGI 360
           PFFGATFFFPRDG          DT+EQLLGQLRIKCWNLMGK DKVIELIEKFIDLGGI
Sbjct: 336 PFFGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKEDKVIELIEKFIDLGGI 395

Query: 361 GELIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSA 420
           GELIKGIEMMIEIILRNRRIPYGYNS LNEVQKMRSLLSNRTKTNTL ESVKI+ VYQSA
Sbjct: 396 GELIKGIEMMIEIILRNRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLIESVKIQSVYQSA 455

Query: 421 SPIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGK 474
           S IAQDISFQLRNKTRSFRSI TKIVKDIP  MKKGVEGI ICCSGR EGAEIARTECGK
Sbjct: 456 SLIAQDISFQLRNKTRSFRSIFTKIVKDIPFGMKKGVEGIRICCSGRLEGAEIARTECGK 515

[Close]

BLAST of CmaCh04G019540 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 804.7 bits (2077), Expect = 6.1e-230
Identity = 420/466 (90.13%), Postives = 428/466 (91.85%), Query Frame = 1


Query: 18  FGFRLVGPIGCLHSSDDTEEERNEVTGREAEKRVES-IRLDDREKQNEMRIWSKKKERYG 77
           + F  VGPIGCLHSSDDTEEERN+V GREAEKRVES IRLDDREKQNE+RIW KKK+ YG
Sbjct: 44  WAFGKVGPIGCLHSSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYG 103

Query: 78  YHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRF 137
           YHDRSPSRKKNLSKSLRVSGAFKHPKYA VVNDIAFLIENDDSFRK +LFKFFFPNQSR 
Sbjct: 104 YHDRSPSRKKNLSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRS 163

Query: 138 DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGAN 197
           DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPV VLNHFVAPGVAEPSTMGGAN
Sbjct: 164 DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGAN 223

Query: 198 TQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPF 257
           TQGRSLDKRIRSRI FFVESST EKKCLAEPKKRLTHFI QANDLRFAGTTKTTISLFPF
Sbjct: 224 TQGRSLDKRIRSRIAFFVESSTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPF 283

Query: 258 FGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGK-DKVIELIEKFIDLGGIGE 317
           FGATFFFPRDG          DT+EQLLGQLRIKCWNLMGK DKVIELIEKFIDLGGIGE
Sbjct: 284 FGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKEDKVIELIEKFIDLGGIGE 343

Query: 318 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 377
           LIKGIEMMIEIILRNRRIPYGYNS LNEVQKMRSLLSNRTKTNTL ESVKI+ VYQSASP
Sbjct: 344 LIKGIEMMIEIILRNRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLIESVKIQSVYQSASP 403

Query: 378 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 437
           IAQDISFQLRNKTRSFRSI TKIVKDIP  MKKGVEGI ICCSGRSEGAEIARTECGKYG
Sbjct: 404 IAQDISFQLRNKTRSFRSIFTKIVKDIPFGMKKGVEGIRICCSGRSEGAEIARTECGKYG 463

Query: 438 KTSRNVFNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMY 472
           KTSRNVFNQKIDYAP EVSTRYGILGVKV ISYKKQKK R I + Y
Sbjct: 464 KTSRNVFNQKIDYAPAEVSTRYGILGVKVWISYKKQKKGRAISETY 509

[Close]

BLAST of CmaCh04G019540 vs. TrEMBL
Match: B6VJV8_VITVI (Ribosomal protein S3 OS=Vitis vinifera GN=rps3 PE=3 SV=1)

HSP 1 Score: 796.2 bits (2055), Expect = 2.2e-227
Identity = 423/528 (80.11%), Postives = 436/528 (82.58%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRGLKRREKSRPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSSD TEEERNEV GR A KRVESIRLDDREKQNE RIW KKK+RY
Sbjct: 96  RWWAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQNERRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHD+SPS KKNLSK LRVSGAFKH KYA VVNDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDQSPSIKKNLSKLLRVSGAFKHLKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSH+LKRTLPAVRPSLNYSVMQYLLNTKN++HFD VVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHILKRTLPAVRPSLNYSVMQYLLNTKNQIHFDSVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           N QGRSLDKRIRSRI FFVESST EKKCLAE KKRLTHFI QANDLRFAGTTKTTISLFP
Sbjct: 276 NAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          D +EQLLGQLRIKCWNLMGKDKV+ELI+KFIDLGGIGE
Sbjct: 336 FFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIDKFIDLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILRNRRIPYGYNS LNEV+KMRSLLSNRT TNTL ESVKIK VYQSASP
Sbjct: 396 LIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASP 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQ RNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGRSEGAEIARTECGKYG
Sbjct: 456 IAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. TrEMBL
Match: E9P2A6_RICCO (Ribosomal protein S3 OS=Ricinus communis GN=rps3 PE=3 SV=1)

HSP 1 Score: 787.3 bits (2032), Expect = 1.0e-224
Identity = 417/528 (78.98%), Postives = 435/528 (82.39%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFINFFLSRRPRRLKRREKTRPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPI CLHSSD+TEEERNEV GR A KRVESIRLDDREK+NE+RIW KKK+RY
Sbjct: 96  RWWTFGKVGPIRCLHSSDNTEEERNEVRGRGAGKRVESIRLDDREKENEIRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHDRSPS KKNLSKSLRVSGAFKHPKYA VVNDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDRSPSIKKNLSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSHLLKRTLPAV  SLNYSVMQYLLNTKN++HFDPVVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHLLKRTLPAVCLSLNYSVMQYLLNTKNQIHFDPVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           N QGRSLDKRIRSRI FFVESST EK CL+E KKRLTHFI QANDLRFAGTTKTTISLFP
Sbjct: 276 NAQGRSLDKRIRSRIAFFVESSTSEKNCLSEAKKRLTHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          D +EQLLGQLRIKCWNLMGKDKV+ELIEKFI+LGGIGE
Sbjct: 336 FFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIEKFINLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILRNRRIPYGYNS LNE++KMRSLLSNRT TNTL ES+K+K VYQSASP
Sbjct: 396 LIKGIEMMIEIILRNRRIPYGYNSYLNEMKKMRSLLSNRTNTNTLIESIKMKSVYQSASP 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQLRNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGR EGAEIARTECGKYG
Sbjct: 456 IAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 657.5 bits (1695), Expect = 6.1e-189
Identity = 352/462 (76.19%), Postives = 380/462 (82.25%), Query Frame = 1


Query: 20  FRLVGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERYGYHD 79
           F   GPI CLHSSDDTEEERNEV GR A KRVESIRLDDR+KQNE+R W KKK+RYGYHD
Sbjct: 101 FGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHD 160

Query: 80  RSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRFDGP 139
           R PS KKNLSKSLR+SGAFKHPKYA VVNDIAFLIENDDSF+K KLFK FF N+SR DGP
Sbjct: 161 RLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTKLFKLFFQNKSRSDGP 220

Query: 140 TSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGANTQG 199
           TS+L  RTLPAVRPSLN+ VMQY  NTKN+++FDPVVVLNHFVAPG AEPSTMG AN QG
Sbjct: 221 TSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAPGAAEPSTMGRANAQG 280

Query: 200 RSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPFFGA 259
           RSL KRIRSRI FFVESST EKKCLAE K RLTHFI  ANDLRFAGTTKTTISLFPFFGA
Sbjct: 281 RSLQKRIRSRIAFFVESSTSEKKCLAEAKNRLTHFIRLANDLRFAGTTKTTISLFPFFGA 340

Query: 260 TFFFPRDG-------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGELIKGIEM 319
           TFFF RDG       D +EQLL QLR+KCWNL+GKDK++ELIEK  +LGGI ELIK I+M
Sbjct: 341 TFFFLRDGVGVYNNLDAREQLLNQLRVKCWNLVGKDKIMELIEKLKNLGGIEELIKVIDM 400

Query: 320 MIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASPIAQDISF 379
           MIEIILR R IPY YNS   EV+KMRS LSNRT T TL ESVKIK VYQSASPIAQDISF
Sbjct: 401 MIEIILRKRGIPYRYNSYFYEVKKMRSFLSNRTNTKTLIESVKIKSVYQSASPIAQDISF 460

Query: 380 QLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGR-SEGAEIARTECGKYGKTSRNV 439
           QL+NK RSF SI  KIVK+IP    KGVEGI IC SGR  + AE A+T+C K+ KTSRNV
Sbjct: 461 QLKNKRRSFHSIFAKIVKEIP----KGVEGIRICFSGRLKDAAEKAQTKCYKHRKTSRNV 520

Query: 440 FNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMYEI 474
           FN KIDYAP EVSTRYGI GVKV ISY ++K  R I + YEI
Sbjct: 521 FNHKIDYAPAEVSTRYGISGVKVWISYSQKKGRRAISETYEI 556

[Close]

BLAST of CmaCh04G019540 vs. TAIR10
Match: ATCG00800.1 (ATCG00800.1 structural constituent of ribosome)

HSP 1 Score: 56.6 bits (135), Expect = 4.8e-08
Identity = 53/178 (29.78%), Postives = 84/178 (47.19%), Query Frame = 1


Query: 287 KDKVIELIEKFIDLGGIGELIKGIEMMIEIILRNRRIPYGYNSNLNE--VQKMRSLLSNR 346
           +D +   ++K I +    E I  IE+   I L    I  G+   L E   +++  L  N 
Sbjct: 40  RDCIKNYVQKNIRISSGMEGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNV 99

Query: 347 TKT-NTLNESVKIKYV-----YQSASPIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKK 406
            K  N +N  + I        Y   + +A+ I+ QL+N+  SFR  + K ++   L  + 
Sbjct: 100 QKELNCVNRKLNIAITRISNPYGDPNILAEFIAGQLKNRV-SFRKAMKKAIE---LTEQA 159

Query: 407 GVEGIHICCSGRSEGAEIARTECGKYGKTSRNVFNQKIDYAPTEVSTRYGILGVKVCI 457
             +GI +  +GR +G EIAR E  + G+        KIDY    V T YG+LG+K+ I
Sbjct: 160 NTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIEAKIDYCSYTVRTIYGVLGIKIWI 213

[Close]

BLAST of CmaCh04G019540 vs. NCBI nr
Match: gi|295311662|ref|YP_003587231.1| (ribosomal protein S3 [Citrullus lanatus])

HSP 1 Score: 823.5 bits (2126), Expect = 1.8e-235
Identity = 437/528 (82.77%), Postives = 445/528 (84.28%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSSDDTEEERNEV GREAEKRVESIRLDDREKQNE+RIW KKK+RY
Sbjct: 96  RWWAFGKVGPIGCLHSSDDTEEERNEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHDRSPS KKNLSK LRVSGAFKHPKYA VVNDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDRSPSIKKNLSKLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSHLLKRTLPAVRPSLNY VMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHLLKRTLPAVRPSLNYLVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           NTQGRSLDKRIRSRI FFVES T EKKCLAE KKRLTHFI QANDLRFAGTTKTTISLFP
Sbjct: 276 NTQGRSLDKRIRSRIAFFVESLTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          DT+EQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE
Sbjct: 336 FFGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILRNRRIPYGYNS LNEV+KMRSLLSNRTKTNTL ESVKIK VYQSAS 
Sbjct: 396 LIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTKTNTLIESVKIKSVYQSASL 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQLRNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGR EGAEIARTECGKYG
Sbjct: 456 IAQDISFQLRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRLEGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 813.9 bits (2101), Expect = 1.4e-232
Identity = 437/530 (82.45%), Postives = 444/530 (83.77%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVES-IRLDDREKQNEMRIWSKKKER 120
                  VGPIGCLHSSDDTEEERN+V GREAEKRVES IRLDDREKQNE+RIW KKK+ 
Sbjct: 96  RWWAFGKVGPIGCLHSSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQD 155

Query: 121 YGYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQS 180
           YGYHDRSPSRKKNLSK LRVSGAFKHPKYA VVNDIAFLIENDDSFRK +LFKFFFPNQS
Sbjct: 156 YGYHDRSPSRKKNLSKLLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQS 215

Query: 181 RFDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGG 240
           R DGPTSHLLKRTLPAVRPSLNY VMQYLLNTKNKMHFDPV VLNHFVAPGVAEPSTMGG
Sbjct: 216 RSDGPTSHLLKRTLPAVRPSLNYLVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGG 275

Query: 241 ANTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLF 300
           ANTQGRSLDKRIRSRI FFVES T EKKCLAEPKKRLTHFI QANDLRFAGTTKTTISLF
Sbjct: 276 ANTQGRSLDKRIRSRIAFFVESLTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLF 335

Query: 301 PFFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGK-DKVIELIEKFIDLGGI 360
           PFFGATFFFPRDG          DT+EQLLGQLRIKCWNLMGK DKVIELIEKFIDLGGI
Sbjct: 336 PFFGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKEDKVIELIEKFIDLGGI 395

Query: 361 GELIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSA 420
           GELIKGIEMMIEIILRNRRIPYGYNS LNEVQKMRSLLSNRTKTNTL ESVKI+ VYQSA
Sbjct: 396 GELIKGIEMMIEIILRNRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLIESVKIQSVYQSA 455

Query: 421 SPIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGK 474
           S IAQDISFQLRNKTRSFRSI TKIVKDIP  MKKGVEGI ICCSGR EGAEIARTECGK
Sbjct: 456 SLIAQDISFQLRNKTRSFRSIFTKIVKDIPFGMKKGVEGIRICCSGRLEGAEIARTECGK 515

[Close]

BLAST of CmaCh04G019540 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 804.7 bits (2077), Expect = 8.8e-230
Identity = 420/466 (90.13%), Postives = 428/466 (91.85%), Query Frame = 1


Query: 18  FGFRLVGPIGCLHSSDDTEEERNEVTGREAEKRVES-IRLDDREKQNEMRIWSKKKERYG 77
           + F  VGPIGCLHSSDDTEEERN+V GREAEKRVES IRLDDREKQNE+RIW KKK+ YG
Sbjct: 44  WAFGKVGPIGCLHSSDDTEEERNKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYG 103

Query: 78  YHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSRF 137
           YHDRSPSRKKNLSKSLRVSGAFKHPKYA VVNDIAFLIENDDSFRK +LFKFFFPNQSR 
Sbjct: 104 YHDRSPSRKKNLSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFRKTQLFKFFFPNQSRS 163

Query: 138 DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGAN 197
           DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPV VLNHFVAPGVAEPSTMGGAN
Sbjct: 164 DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVGVLNHFVAPGVAEPSTMGGAN 223

Query: 198 TQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFPF 257
           TQGRSLDKRIRSRI FFVESST EKKCLAEPKKRLTHFI QANDLRFAGTTKTTISLFPF
Sbjct: 224 TQGRSLDKRIRSRIAFFVESSTSEKKCLAEPKKRLTHFIRQANDLRFAGTTKTTISLFPF 283

Query: 258 FGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGK-DKVIELIEKFIDLGGIGE 317
           FGATFFFPRDG          DT+EQLLGQLRIKCWNLMGK DKVIELIEKFIDLGGIGE
Sbjct: 284 FGATFFFPRDGVGMYKNLFFEDTREQLLGQLRIKCWNLMGKEDKVIELIEKFIDLGGIGE 343

Query: 318 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 377
           LIKGIEMMIEIILRNRRIPYGYNS LNEVQKMRSLLSNRTKTNTL ESVKI+ VYQSASP
Sbjct: 344 LIKGIEMMIEIILRNRRIPYGYNSYLNEVQKMRSLLSNRTKTNTLIESVKIQSVYQSASP 403

Query: 378 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 437
           IAQDISFQLRNKTRSFRSI TKIVKDIP  MKKGVEGI ICCSGRSEGAEIARTECGKYG
Sbjct: 404 IAQDISFQLRNKTRSFRSIFTKIVKDIPFGMKKGVEGIRICCSGRSEGAEIARTECGKYG 463

Query: 438 KTSRNVFNQKIDYAPTEVSTRYGILGVKVCISYKKQKKERVIFKMY 472
           KTSRNVFNQKIDYAP EVSTRYGILGVKV ISYKKQKK R I + Y
Sbjct: 464 KTSRNVFNQKIDYAPAEVSTRYGILGVKVWISYKKQKKGRAISETY 509

[Close]

BLAST of CmaCh04G019540 vs. NCBI nr
Match: gi|224365643|ref|YP_002608370.1| (ribosomal protein S3 [Vitis vinifera])

HSP 1 Score: 796.2 bits (2055), Expect = 3.1e-227
Identity = 423/528 (80.11%), Postives = 436/528 (82.58%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRGLKRREKSRPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGPIGCLHSSD TEEERNEV GR A KRVESIRLDDREKQNE RIW KKK+RY
Sbjct: 96  RWWAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQNERRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYHD+SPS KKNLSK LRVSGAFKH KYA VVNDIAFLIENDDSFRK KLFKFFFP +SR
Sbjct: 156 GYHDQSPSIKKNLSKLLRVSGAFKHLKYAGVVNDIAFLIENDDSFRKTKLFKFFFPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSH+LKRTLPAVRPSLNYSVMQYLLNTKN++HFD VVVLNHFVAPGVAEPSTMGGA
Sbjct: 216 SDGPTSHILKRTLPAVRPSLNYSVMQYLLNTKNQIHFDSVVVLNHFVAPGVAEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTREKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISLFP 300
           N QGRSLDKRIRSRI FFVESST EKKCLAE KKRLTHFI QANDLRFAGTTKTTISLFP
Sbjct: 276 NAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKRLTHFIRQANDLRFAGTTKTTISLFP 335

Query: 301 FFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGIGE 360
           FFGATFFFPRDG          D +EQLLGQLRIKCWNLMGKDKV+ELI+KFIDLGGIGE
Sbjct: 336 FFGATFFFPRDGVGVYNNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIDKFIDLGGIGE 395

Query: 361 LIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSASP 420
           LIKGIEMMIEIILRNRRIPYGYNS LNEV+KMRSLLSNRT TNTL ESVKIK VYQSASP
Sbjct: 396 LIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRTNTNTLIESVKIKSVYQSASP 455

Query: 421 IAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGKYG 474
           IAQDISFQ RNKTRSFRSI +KIVKDIPLVMKKGVEGI ICCSGRSEGAEIARTECGKYG
Sbjct: 456 IAQDISFQPRNKTRSFRSIFSKIVKDIPLVMKKGVEGIRICCSGRSEGAEIARTECGKYG 515

[Close]

BLAST of CmaCh04G019540 vs. NCBI nr
Match: gi|1016470816|ref|YP_009241675.1| (ribosomal protein S3 (mitochondrion) [Ziziphus jujuba])

HSP 1 Score: 787.3 bits (2032), Expect = 1.5e-224
Identity = 420/530 (79.25%), Postives = 433/530 (81.70%), Query Frame = 1


Query: 1   VNLRSYFGSIRPPTILPFGFRL-------------------------------------- 60
           VNLRSYFGSIRPPT L FGFRL                                      
Sbjct: 36  VNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKG 95

Query: 61  -------VGPIGCLHSSDDTEEERNEVTGREAEKRVESIRLDDREKQNEMRIWSKKKERY 120
                  VGP+ CLHSSDDTEEERNEV GR   KRVESIRLDDREKQNE+RIW KKK+RY
Sbjct: 96  RWWAFGKVGPLRCLHSSDDTEEERNEVRGRGEGKRVESIRLDDREKQNEIRIWPKKKQRY 155

Query: 121 GYHDRSPSRKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDDSFRKMKLFKFFFPNQSR 180
           GYH+RSPS KKNLSKSLRVS AFKHPKYA VVNDIAFLIENDD FRK KLFKFF P +SR
Sbjct: 156 GYHERSPSIKKNLSKSLRVSRAFKHPKYAGVVNDIAFLIENDDFFRKTKLFKFFLPKKSR 215

Query: 181 FDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKMHFDPVVVLNHFVAPGVAEPSTMGGA 240
            DGPTSHLLKRTLPAVRPSLNYSVMQYLLNTK KM FDPVVVLNHFVAPGV+EPSTMGGA
Sbjct: 216 SDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKKKMDFDPVVVLNHFVAPGVSEPSTMGGA 275

Query: 241 NTQGRSLDKRIRSRIIFFVESSTR--EKKCLAEPKKRLTHFIHQANDLRFAGTTKTTISL 300
           N QGRSLDKRIRSRI FFVESST   EKKCLAE KKRLTHFI +ANDLRFAGTTKTTISL
Sbjct: 276 NAQGRSLDKRIRSRIAFFVESSTSTSEKKCLAEAKKRLTHFIREANDLRFAGTTKTTISL 335

Query: 301 FPFFGATFFFPRDG----------DTQEQLLGQLRIKCWNLMGKDKVIELIEKFIDLGGI 360
           FPFFGATFFFPRDG          D +EQLLGQLRIKCWNLMGKDKV+ELIEKFIDLGGI
Sbjct: 336 FPFFGATFFFPRDGVGMYKNLFFEDAREQLLGQLRIKCWNLMGKDKVMELIEKFIDLGGI 395

Query: 361 GELIKGIEMMIEIILRNRRIPYGYNSNLNEVQKMRSLLSNRTKTNTLNESVKIKYVYQSA 420
           GELIKGIEMMIEIILRNRRIPYGYNS LNEV+KMRSLLSNR  TNTL ESVKIK VYQSA
Sbjct: 396 GELIKGIEMMIEIILRNRRIPYGYNSYLNEVKKMRSLLSNRAHTNTLMESVKIKSVYQSA 455

Query: 421 SPIAQDISFQLRNKTRSFRSILTKIVKDIPLVMKKGVEGIHICCSGRSEGAEIARTECGK 474
           SPIAQDISFQLRNKTRSFRSI +KIVKDIPL+MKKGVEGI ICCSGRSEGAEIARTECGK
Sbjct: 456 SPIAQDISFQLRNKTRSFRSIFSKIVKDIPLIMKKGVEGIRICCSGRSEGAEIARTECGK 515

The following BLAST results are available for this feature:

BLAST of CmaCh04G019540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT03_OENBE	4.8e-220	78.83	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2	[more]
RT03_PETHY	3.5e-218	85.13	Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1	[more]
RT03_MAIZE	1.2e-207	75.43	Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1	[more]
RT03_ORYSJ	5.4e-195	72.54	Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3...	[more]
RT03_ARATH	3.3e-184	75.32	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3	[more]

BLAST of CmaCh04G019540 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3A1_CITLA	1.3e-235	82.77	Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1	[more]
D5I3F1_CUCPE	1.0e-232	82.45	Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
E5DM03_CUCPE	6.1e-230	90.13	Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
B6VJV8_VITVI	2.2e-227	80.11	Ribosomal protein S3 OS=Vitis vinifera GN=rps3 PE=3 SV=1	[more]
E9P2A6_RICCO	1.0e-224	78.98	Ribosomal protein S3 OS=Ricinus communis GN=rps3 PE=3 SV=1	[more]

BLAST of CmaCh04G019540 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00090.1	6.1e-189	76.19	ATMG00090.1 structural constituent of ribosome;protein binding	[more]
ATCG00800.1	4.8e-08	29.78	ATCG00800.1 structural constituent of ribosome	[more]

BLAST of CmaCh04G019540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311662\|ref\|YP_003587231.1\|	1.8e-235	82.77	ribosomal protein S3 [Citrullus lanatus]	[more]
gi\|295311706\|ref\|YP_003587365.1\|	1.4e-232	82.45	ribosomal protein S3 [Cucurbita pepo]	[more]
gi\|302748681\|gb\|ADL63821.1\|	8.8e-230	90.13	ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo]	[more]
gi\|224365643\|ref\|YP_002608370.1\|	3.1e-227	80.11	ribosomal protein S3 [Vitis vinifera]	[more]
gi\|1016470816\|ref\|YP_009241675.1\|	1.5e-224	79.25	ribosomal protein S3 (mitochondrion) [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001351	Ribosomal_S3_C
IPR018280	Ribosomal_S3_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G019540.1	CmaCh04G019540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001351	Ribosomal protein S3, C-terminal	GENE3D	G3DSA:3.30.1140.32		coord: 359..460 score: 1.2
IPR001351	Ribosomal protein S3, C-terminal	unknown	SSF54821	Ribosomal protein S3 C-terminal domain	coord: 358..459 score: 1.02
IPR018280	Ribosomal protein S3, conserved site	PROSITE	PS00548	RIBOSOMAL_S3	coord: 417..451 scor
None	No IPR available	PANTHER	PTHR35928	FAMILY NOT NAMED	coord: 1..22 score: 2.8E-144coord: 45..356 score: 2.8E
None	No IPR available	PFAM	PF00189	Ribosomal_S3_C	coord: 378..456 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G019540	CmoCh04G020670	Cucurbita moschata (Rifu)	cmacmoB728

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G019540	Cucurbita maxima (Rimu)	cmacmaB550
CmaCh04G019540	Cucurbita moschata (Rifu)	cmacmoB679
CmaCh04G019540	Watermelon (Charleston Gray)	cmawcgB622
CmaCh04G019540	Watermelon (97103) v1	cmawmB739
CmaCh04G019540	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G019540	Cucumber (Gy14) v2	cgybcmaB670
CmaCh04G019540	Melon (DHL92) v3.6.1	cmamedB737
CmaCh04G019540	Watermelon (97103) v2	cmawmbB726