CmaCh04G020330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G020330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	structural constituent of ribosome;protein binding
Location	Cma_Chr04 : 13065131 .. 13067689 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGAAGAGTTTACTTCGACACAGAAACGAAGACTTTCGAGAACAAATGGACCGGGAAAAAAAAGGGGAGAAAGTCGAGTCTAAACGCATATGGCACGAAAAGGAAATCTGATTTCGGTAAGACTTGATCTGAATCGTAGTTTAGATTCAAGTCGGTTCAGTGAGGGCGACCGCGAAAGTCACCGAATGGGTCAGTCTTTTCCTTCAGTTTGTCCTATATTGAAAATAAAAAAAAGCATGGGAGGACATTGCAGATGTCCAGGACGGACACAACTTCTTCTAACGCTAGAAGACCACTGGAAGACACCCGAGACCAGAGCATGTCGTGAAAGAAGCACACTGGTCGTGCTTCGACTGTGTCTCTGAGGCACAATTGAATGTAGATATCATGAACGCAAGGTACAGGATACCAGGCCGAGAAACCTGGGCAACCACTCCCCTATGTGCTGATCGCTAGCACATCTAGGGCCCCGGCGCCCAGCGGAGCTGGAGAGGCCTAGCCTGATCGGAGAAGTGCTAATTCGGTTCGTCTCGACTTCATTCAAGAACACCACCCCTGGAATCAATAAGAAAACAAGTGCTAAGTTTCAGATCAGTGAATAAACCGAAACGAAAGAAGAGACGTTTCTCGCTCAGTGCCTAAAGCGCACTATGCTCCCCTTCAACAAATGAGAGTTTTCGGTGGAACAGGTGAACCACGCGAGCAGGCAGGTTAGATGCGTGGGACAGAGGGCTCGTAGTACCTACTAGCGCAGCTATGCATTGGAAGGGAAGGAGCCTAAATTGACCCCCTTTTTTCTTTGATAAAAAAAATAGTACAAAGAGATTAGACTTGCGAATGAGACTAAGCAGCCACCAACCGTTCCGACGCGCCCCTGACCTATCTTGATTAAGACCAAACAAACAAAACCTATAAAAAATGGAGCCTAGTTTAAGCTGTCAAAAAAATAAATGAGAGAATGGAAAATGATGAATATCCACTAGTAGGGATATATATAGATGGAGTCTCTCTCAGTAAAGAGAGTTGTAGATTCGTAGGAAAGGAAAGGAGTGAAGCTGCTTTACCGAGGGGAGAAGAGCCTTGAGAACCTATTAGTAAAGCGCTAATGCGCCCCTGCCATCTTTTTAAAGCAACAAGCGAGAAAGTTGCCCCTTTTTCAATAACAAAAAAGGAAAGAAAGAAAGAAGAAGGGCCAACCAACTATTAGAATATTAGTAAAGGCGCCTTAGCCTATCTCTCGATATAGTCAGGGGCCTTTTCTTGCTCGTTAGCGCTCCCTTCCTTACCCCCCTATAAAAGGTTTTGCATAAAGGTAGCTTGTCTACGCCTTATGAAAACCTGACTCTGACTACTAATAATAATGAAGGGGCTTCTTTCTTCAAATATCCTATAAAAAAAGTTGAGGCTGAAAAGCTTTGAGTTTAGGGCAGGTTTGGAACCCTATACAAGGGGCTTTTCCTTTCAAATGACACCTCTTCTTGTGCGAGGGCGTTGCACGAAACCAAACCGCTCCCCCGCCCGATCAGGTACCTGTTGCTTTGCTGGTAGGCCGACTTAGGTTAGAGGGCATTGTCCCTCAGTTCTTACCAACCTCCGGTGTATAATCGACATGTTGCTAGCTTCAACTCGGTGGAATAAGAATCATTGATTCCCTTGTCTATTTCTTATTCATTTAGAGCGTTCGGCCGGTGCGTGCTCCTTTCTCAAACCATAACAACTCTGAACGTTAGGGAAGATAAGGGAAGACCACCTGAGCGAACCGACCGAAGGGACTTGACTTATTCGAACCGAAGGATAGCGGCTTCAAACTCAGCCTATCATGAGTAGCCTCGCTGCTTGATCGGCGGGGAGGAGAATCTCAAAGTATGGGGCAAAGGATCAAGCGCTTTGACTTTGTCTCCCGGGGGGATCCACCACATGTTGGGTTTGAGAGTCGTGTGATGGGTGACTATCCAGCACGGTTCGGAGAGCAAGCACTTTTAGTCTATGTTGGTGAATAGAAGCCCCCCCTATCAAGTCAAGCAAGAAAGAAGCGGCTCTTCCCACGGCGGAGTCGCCATTGAATCTATTTATTATTATGGTAAATCACTGTATCAAGATGTCAATTTGAGATCTTATTTTGGTTCGATACGTCCACCTACGAGACTGCCCTTTGACTTTCGTCTTGGTAGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

mRNA sequence

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

Coding sequence (CDS)

ATGGAAAAACTTATGTTCGTTGTAAGATCACTGAAGGAAGGGTGTATTATTTTACATTTTCCCAAAATCACATTCATTCATTTCTTTCTTCCTCGTCGACCACGACGATTGAAACGACGCACAAAATCCAAACCCGAAAAGGATCAGGGCCGATGGTGGGCATTTGGGAATGTCGGGCCAATCGGGTGTCTTCATTCAAGCGACGATACAGAAGAAGAACGAAACGAAGTGAGAGGCCGGGAGGCAGAGAAAAGAGTGGAGTCGATCAGGCTCGACGACTGCGAAAAGCAAAACGAAATGAGGATTTGGCCGAAAAAGAAGGAACGCTATGGATACCTTGACCGATCACCATCGAGAAAGAAGAATCTTTCTTAA

Protein sequence

MEKLMFVVRSLKEGCIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEERNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS

Homology

[Close]

BLAST of CmaCh04G020330 vs. Swiss-Prot
Match: RT03_PETHY (Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 6.4e-47
Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRW AFG VGPIGCLHSSD TEEER
Sbjct: 59  CIILHFPKRTFIHFFLPRRPRRLKRREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEER 118

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESIRLDD EKQNE+RIWPKKK+ YGY DRSPS KKNLS
Sbjct: 119 NEVRGRGAGKRVESIRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 168

[Close]

BLAST of CmaCh04G020330 vs. Swiss-Prot
Match: RT03_OENBE (Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 5.4e-46
Identity = 90/110 (81.82%), Postives = 96/110 (87.27%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKR  KS+P K++ RWW FG VGPIGCLHS+DDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEV GR A KRVESIRLDD EKQNE+RIWPKKK+ YGY DRSPS KKNLS
Sbjct: 120 NEVGGRGAGKRVESIRLDDREKQNEIRIWPKKKQGYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. Swiss-Prot
Match: RT03_ORYSJ (Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 6.0e-45
Identity = 90/110 (81.82%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRP RLKRR KS+P KD+GRWWAFG VGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESI   D EKQNE+RIWPKK +RYGY DRSPSRKKN S
Sbjct: 120 NEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRYGYHDRSPSRKKNFS 166

[Close]

BLAST of CmaCh04G020330 vs. Swiss-Prot
Match: RT03_ARATH (Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-44
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWA-FGNVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLPRRPRRLKRR K++P K++GRWW  FG  GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD +KQNE+R WPKKK+RYGY DR PS KKNLS
Sbjct: 120 RNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. Swiss-Prot
Match: RT03_MAIZE (Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-44
Identity = 89/110 (80.91%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRP RLKRR KS+P KD+GRWWAFG VGPIGCLHSS+ TEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESI   D EKQNE+RIWPKK +RYGY DR+PSRKKN S
Sbjct: 120 NEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRYGYHDRTPSRKKNFS 166

[Close]

BLAST of CmaCh04G020330 vs. TrEMBL
Match: D5I3A1_CITLA (Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.6e-50
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KSKP K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREAEKRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 120 NEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. TrEMBL
Match: D5I3F1_CUCPE (Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. TrEMBL
Match: E5DM03_CUCPE (Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 2.8e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 116

[Close]

BLAST of CmaCh04G020330 vs. TrEMBL
Match: E5DMI5_9ROSA (Ribosomal protein S3 (Fragment) OS=Spiraea sp. Qiu 05008 GN=rps3 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.1e-48
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 4   CIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 63

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR AEKRVE IRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 64  NEVRGRGAEKRVEPIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 113

[Close]

BLAST of CmaCh04G020330 vs. TrEMBL
Match: E5DMG0_9MAGN (Ribosomal protein S3 (Fragment) OS=Roupala macrophylla GN=rps3 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.0e-48
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSD TEEER
Sbjct: 6   CIILHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWAFGKVGPIGCLHSSDGTEEER 65

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPSRKKNLS
Sbjct: 66  NEVRGRGAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSRKKNLS 115

[Close]

BLAST of CmaCh04G020330 vs. TAIR10
Match: ATMG00090.1 (ATMG00090.1 structural constituent of ribosome;protein binding)

HSP 1 Score: 180.3 bits (456), Expect = 7.5e-46
Identity = 89/111 (80.18%), Postives = 96/111 (86.49%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWA-FGNVGPIGCLHSSDDTEEE 74
           CIILHFPK TFIHFFLPRRPRRLKRR K++P K++GRWW  FG  GPI CLHSSDDTEEE
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEE 119

Query: 75  RNEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           RNEVRGR A KRVESIRLDD +KQNE+R WPKKK+RYGY DR PS KKNLS
Sbjct: 120 RNEVRGRGARKRVESIRLDDRKKQNEIRGWPKKKQRYGYHDRLPSIKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: gi|295311662|ref|YP_003587231.1| (ribosomal protein S3 [Citrullus lanatus])

HSP 1 Score: 204.9 bits (520), Expect = 8.1e-50
Identity = 99/110 (90.00%), Postives = 103/110 (93.64%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KSKP K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKRTFIHFFLPRRPRRLKRREKSKPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGREAEKRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 120 NEVRGREAEKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 169

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: gi|302748681|gb|ADL63821.1| (ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo])

HSP 1 Score: 202.6 bits (514), Expect = 4.0e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 66  NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 116

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: gi|295311706|ref|YP_003587365.1| (ribosomal protein S3 [Cucurbita pepo])

HSP 1 Score: 202.6 bits (514), Expect = 4.0e-49
Identity = 100/111 (90.09%), Postives = 103/111 (92.79%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPKITFIHFFLPRRPR LKRR KSKP KDQGRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 60  CIILHFPKITFIHFFLPRRPRGLKRRAKSKPGKDQGRWWAFGKVGPIGCLHSSDDTEEER 119

Query: 75  NEVRGREAEKRVES-IRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           N+VRGREAEKRVES IRLDD EKQNE+RIWPKKK+ YGY DRSPSRKKNLS
Sbjct: 120 NKVRGREAEKRVESMIRLDDREKQNEIRIWPKKKQDYGYHDRSPSRKKNLS 170

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: gi|302749047|gb|ADL64003.1| (ribosomal protein S3, partial (mitochondrion) [Spiraea sp. Qiu 05008])

HSP 1 Score: 199.1 bits (505), Expect = 4.4e-48
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 4   CIILHFPKRTFIHFFLPRRPRRLKRREKSRPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 63

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR AEKRVE IRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 64  NEVRGRGAEKRVEPIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 113

[Close]

BLAST of CmaCh04G020330 vs. NCBI nr
Match: gi|302748824|gb|ADL63892.1| (ribosomal protein S3, partial (mitochondrion) [Ixerba brexioides])

HSP 1 Score: 198.7 bits (504), Expect = 5.8e-48
Identity = 96/110 (87.27%), Postives = 101/110 (91.82%), Query Frame = 1


Query: 15  CIILHFPKITFIHFFLPRRPRRLKRRTKSKPEKDQGRWWAFGNVGPIGCLHSSDDTEEER 74
           CIILHFPK TFIHFFLPRRPRRLKRR KS+P K++GRWWAFG VGPIGCLHSSDDTEEER
Sbjct: 6   CIILHFPKRTFIHFFLPRRPRRLKRRAKSRPGKEKGRWWAFGKVGPIGCLHSSDDTEEER 65

Query: 75  NEVRGREAEKRVESIRLDDCEKQNEMRIWPKKKERYGYLDRSPSRKKNLS 125
           NEVRGR A KRVESIRLDD EKQNE+RIWPKKK+RYGY DRSPS KKNLS
Sbjct: 66  NEVRGRGAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHDRSPSIKKNLS 115

The following BLAST results are available for this feature:

BLAST of CmaCh04G020330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT03_PETHY	6.4e-47	84.55	Ribosomal protein S3, mitochondrial OS=Petunia hybrida GN=YRPS3 PE=2 SV=1	[more]
RT03_OENBE	5.4e-46	81.82	Ribosomal protein S3, mitochondrial OS=Oenothera berteroana GN=RPS3 PE=3 SV=2	[more]
RT03_ORYSJ	6.0e-45	81.82	Ribosomal protein S3, mitochondrial OS=Oryza sativa subsp. japonica GN=RPS3 PE=3...	[more]
RT03_ARATH	1.3e-44	80.18	Ribosomal protein S3, mitochondrial OS=Arabidopsis thaliana GN=RPS3 PE=2 SV=3	[more]
RT03_MAIZE	1.3e-44	80.91	Ribosomal protein S3, mitochondrial OS=Zea mays GN=RPS3 PE=3 SV=1	[more]

BLAST of CmaCh04G020330 vs. TrEMBL


Match Name	E-value	Identity	Description
D5I3A1_CITLA	5.6e-50	90.00	Ribosomal protein S3 OS=Citrullus lanatus GN=rps3 PE=3 SV=1	[more]
D5I3F1_CUCPE	2.8e-49	90.09	Ribosomal protein S3 OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
E5DM03_CUCPE	2.8e-49	90.09	Ribosomal protein S3 (Fragment) OS=Cucurbita pepo GN=rps3 PE=3 SV=1	[more]
E5DMI5_9ROSA	3.1e-48	87.27	Ribosomal protein S3 (Fragment) OS=Spiraea sp. Qiu 05008 GN=rps3 PE=3 SV=1	[more]
E5DMG0_9MAGN	4.0e-48	87.27	Ribosomal protein S3 (Fragment) OS=Roupala macrophylla GN=rps3 PE=3 SV=1	[more]

BLAST of CmaCh04G020330 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00090.1	7.5e-46	80.18	ATMG00090.1 structural constituent of ribosome;protein binding	[more]

BLAST of CmaCh04G020330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|295311662\|ref\|YP_003587231.1\|	8.1e-50	90.00	ribosomal protein S3 [Citrullus lanatus]	[more]
gi\|302748681\|gb\|ADL63821.1\|	4.0e-49	90.09	ribosomal protein S3, partial (mitochondrion) [Cucurbita pepo]	[more]
gi\|295311706\|ref\|YP_003587365.1\|	4.0e-49	90.09	ribosomal protein S3 [Cucurbita pepo]	[more]
gi\|302749047\|gb\|ADL64003.1\|	4.4e-48	87.27	ribosomal protein S3, partial (mitochondrion) [Spiraea sp. Qiu 05008]	[more]
gi\|302748824\|gb\|ADL63892.1\|	5.8e-48	87.27	ribosomal protein S3, partial (mitochondrion) [Ixerba brexioides]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G020330.1	CmaCh04G020330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G020330	CmoCh04G020670	Cucurbita moschata (Rifu)	cmacmoB741

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G020330	Watermelon (97103) v2	cmawmbB750
CmaCh04G020330	Watermelon (97103) v2	cmawmbB768
CmaCh04G020330	Wax gourd	cmawgoB0908
CmaCh04G020330	Cucurbita moschata (Rifu)	cmacmoB698
CmaCh04G020330	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G020330	Wild cucumber (PI 183967)	cmacpiB753
CmaCh04G020330	Cucumber (Chinese Long) v2	cmacuB744
CmaCh04G020330	Melon (DHL92) v3.5.1	cmameB632
CmaCh04G020330	Watermelon (Charleston Gray)	cmawcgB648
CmaCh04G020330	Watermelon (97103) v1	cmawmB674
CmaCh04G020330	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G020330	Bottle gourd (USVL1VR-Ls)	cmalsiB623
CmaCh04G020330	Bottle gourd (USVL1VR-Ls)	cmalsiB683
CmaCh04G020330	Cucumber (Gy14) v2	cgybcmaB657
CmaCh04G020330	Cucumber (Gy14) v2	cgybcmaB663
CmaCh04G020330	Melon (DHL92) v3.6.1	cmamedB717
CmaCh04G020330	Melon (DHL92) v3.6.1	cmamedB747
CmaCh04G020330	Cucumber (Chinese Long) v3	cmacucB0877