CmoCh04G020360 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G020360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCalcium-binding EF-hand family protein, putative
LocationCmo_Chr04 : 11055966 .. 11056397 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAGTATGAAGCAAGTGAGTTGATCAAGAAGTATCCAAGAAATGGTGATGATGTTCAACTAAAATCTTTCAGTGACATTGCTCGAGATTCAACTCAACTCAATAATCAAGGCAAGATACCAGAAATTCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATGCTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTACGGTATGTCATATGCGGATGCAAATAAAGATGGCCTTATCAGCGAGGCTGAACTTGACAAACTCATTGATTATGCTCAGAAATTTGTGAAGAAGAAATGA

mRNA sequence

ATGGCTAAGTATGAAGCAAGTGAGTTGATCAAGAAGTATCCAAGAAATGGTGATGATGTTCAACTAAAATCTTTCAGTGACATTGCTCGAGATTCAACTCAACTCAATAATCAAGGCAAGATACCAGAAATTCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATGCTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTACGGTATGTCATATGCGGATGCAAATAAAGATGGCCTTATCAGCGAGGCTGAACTTGACAAACTCATTGATTATGCTCAGAAATTTGTGAAGAAGAAATGA

Coding sequence (CDS)

ATGGCTAAGTATGAAGCAAGTGAGTTGATCAAGAAGTATCCAAGAAATGGTGATGATGTTCAACTAAAATCTTTCAGTGACATTGCTCGAGATTCAACTCAACTCAATAATCAAGGCAAGATACCAGAAATTCTAAAAGATAACAAGAATGTTGGGCTCAAGCTTAGTTCAAATGCTCACCCAAAGACATCTAAGTTGCAATTTAGTCGAGAGCAGATGAAGGAGATCTTTAAATATCATGATAGCGATAAGGATGGTTTTCTCAATTTAAGGGAGCTAACAAAAGCTTTTGCTTTTCTAGGCTCAATTATTCCATTTGAGAAAGCTTCCTACGGTATGTCATATGCGGATGCAAATAAAGATGGCCTTATCAGCGAGGCTGAACTTGACAAACTCATTGATTATGCTCAGAAATTTGTGAAGAAGAAATGA
Homology
[Close]
BLAST of CmoCh04G020360 vs. TrEMBL
Match: A0A0A0KLF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 94/163 (57.67%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLN-NQGKIPEILKDNKNVGLKLSSNAH 61
           AKYEAS+L+KKY +NG+ V L +F+D AR STQ+N N+    + LK N +V  KLSSNA 
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  --------------------PKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFL 121
                                K S +QFSREQ+KEIF+Y+DSD+DGFLN+RE+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           GSI PF KA +GM YAD NKDGLI E ELDKLI+YA KF+KKK
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020360 vs. TrEMBL
Match: A0A0A0KMQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 5.7e-38
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 1 

Query: 1   MAKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAH 60
           MA YEAS LIK+Y +NGD V++K+F D+ R STQ+ N+  + +ILK +  V  KL S AH
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  --------------------PKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFL 120
                                K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           GS+ PF KA YGM YADAN+DGLISEAELDKLIDYA K +KKK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020360 vs. TrEMBL
Match: A0A0A0LRC8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.3e-36
Identity = 91/162 (56.17%), Postives = 112/162 (69.14%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDV----QLKSFSDIARDSTQLNNQGKIPE--ILKDNKNVGLKL 61
           AK EA+ELIKKY RNGD V    +L+SF   AR STQLNN   +    + K N+N+  K+
Sbjct: 10  AKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKV 69

Query: 62  SSNA--------------HPKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLG 121
           SSN                 K S +  SREQ+KEIFKYHDS+KDGFL++RELTKAF+ +G
Sbjct: 70  SSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMG 129

Query: 122 SIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           SI+PF KA Y M+YAD ++DGL+SEAELDKLIDYA K +KKK
Sbjct: 130 SIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020360 vs. TrEMBL
Match: A0A0A0KIY4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.1e-33
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLNN-QGKIPEIL--KDNKNVGLKLSSN 61
           AKYEAS+L+KK+  N + V LK+F+ I   ST++NN Q    EI+    N  V   L+SN
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  AHP---------------------KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAF 121
           A+                      K S +QFSREQ+KEIF+YHDSD DGFLNLRE+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           AFLG+I+P  KA +GM YADANKDGLIS+ EL+KL+DYA KF  K+
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020360 vs. TrEMBL
Match: A0A0A0LKX1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-21
Identity = 54/85 (63.53%), Postives = 64/85 (75.29%), Query Frame = 1 

Query: 59  AHPKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGSIIPFEKASYGMSYADA 118
           A P  SK  FSRE+MKEIF+ HD D DG+L++ EL KA  FLG  IPF KA YGM+Y D 
Sbjct: 2   ALPGVSKFNFSREEMKEIFREHDIDGDGYLSISELIKAMGFLGHSIPFYKAHYGMAYCDE 61

Query: 119 NKDGLISEAELDKLIDYAQKFVKKK 144
           N DGLISE ELDKLIDYA++F K++
Sbjct: 62  NGDGLISEDELDKLIDYAERFQKRR 86

[Close]
BLAST of CmoCh04G020360 vs. NCBI nr
Match: gi|700194512|gb|KGN49689.1| (hypothetical protein Csa_5G067670 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-38
Identity = 94/163 (57.67%), Postives = 114/163 (69.94%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLN-NQGKIPEILKDNKNVGLKLSSNAH 61
           AKYEAS+L+KKY +NG+ V L +F+D AR STQ+N N+    + LK N +V  KLSSNA 
Sbjct: 38  AKYEASKLMKKYEQNGEGVILSAFNDNARGSTQINTNREMATKKLKPNDDVAHKLSSNAQ 97

Query: 62  --------------------PKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFL 121
                                K S +QFSREQ+KEIF+Y+DSD+DGFLN+RE+TKAFA L
Sbjct: 98  LKSNNQIRGKAQVPIKRVYDTKASNMQFSREQIKEIFQYYDSDRDGFLNIREVTKAFALL 157

Query: 122 GSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           GSI PF KA +GM YAD NKDGLI E ELDKLI+YA KF+KKK
Sbjct: 158 GSIFPFNKAYHGMVYADTNKDGLIGEDELDKLINYANKFMKKK 200

[Close]
BLAST of CmoCh04G020360 vs. NCBI nr
Match: gi|700194510|gb|KGN49687.1| (hypothetical protein Csa_5G067410 [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 8.2e-38
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 1 

Query: 1   MAKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLNNQGKIPEILKDNKNVGLKLSSNAH 60
           MA YEAS LIK+Y +NGD V++K+F D+ R STQ+ N+  + +ILK +  V  KL S AH
Sbjct: 10  MAMYEASMLIKQYEKNGDAVKVKAFDDV-RSSTQIGNRESVLKILKPSDGVAHKLRSEAH 69

Query: 61  --------------------PKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFL 120
                                K+S +  SRE++KEIF+YHD++ DGFLN  ELTKAFAFL
Sbjct: 70  IQPTQRTGGKGKKSITRVLDRKSSNMSLSRERIKEIFQYHDNNNDGFLNRMELTKAFAFL 129

Query: 121 GSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           GS+ PF KA YGM YADAN+DGLISEAELDKLIDYA K +KKK
Sbjct: 130 GSMFPFYKACYGMVYADANEDGLISEAELDKLIDYASKIIKKK 171

[Close]
BLAST of CmoCh04G020360 vs. NCBI nr
Match: gi|449470190|ref|XP_004152801.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 7.6e-36
Identity = 91/162 (56.17%), Postives = 112/162 (69.14%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDV----QLKSFSDIARDSTQLNNQGKIPE--ILKDNKNVGLKL 61
           AK EA+ELIKKY RNGD V    +L+SF   AR STQLNN   +    + K N+N+  K+
Sbjct: 10  AKNEANELIKKYDRNGDGVLTKEELQSFLRDARGSTQLNNIRNVSSSTVPKTNENLAQKV 69

Query: 62  SSNA--------------HPKTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLG 121
           SSN                 K S +  SREQ+KEIFKYHDS+KDGFL++RELTKAF+ +G
Sbjct: 70  SSNTCITPKKQLLDKAQGSSKQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFSSMG 129

Query: 122 SIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           SI+PF KA Y M+YAD ++DGL+SEAELDKLIDYA K +KKK
Sbjct: 130 SIVPFCKARYAMAYADVDEDGLVSEAELDKLIDYAHKIIKKK 171

[Close]
BLAST of CmoCh04G020360 vs. NCBI nr
Match: gi|700194513|gb|KGN49690.1| (hypothetical protein Csa_5G068170 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-33
Identity = 88/166 (53.01%), Postives = 110/166 (66.27%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDVQLKSFSDIARDSTQLNN-QGKIPEIL--KDNKNVGLKLSSN 61
           AKYEAS+L+KK+  N + V LK+F+ I   ST++NN Q    EI+    N  V   L+SN
Sbjct: 11  AKYEASKLMKKHENNDEGVPLKAFNGIPPASTKINNKQAMATEIILKPSNHPVAHYLTSN 70

Query: 62  AHP---------------------KTSKLQFSREQMKEIFKYHDSDKDGFLNLRELTKAF 121
           A+                      K S +QFSREQ+KEIF+YHDSD DGFLNLRE+TKAF
Sbjct: 71  AYMIPSKQLGAGKAQVTTTSVLDIKASNMQFSREQIKEIFQYHDSDNDGFLNLREVTKAF 130

Query: 122 AFLGSIIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           AFLG+I+P  KA +GM YADANKDGLIS+ EL+KL+DYA KF  K+
Sbjct: 131 AFLGTILPLYKAYHGMVYADANKDGLISKDELEKLVDYAYKFFNKR 176

[Close]
BLAST of CmoCh04G020360 vs. NCBI nr
Match: gi|659089539|ref|XP_008445564.1| (PREDICTED: probable calcium-binding protein CML11 [Cucumis melo])

HSP 1 Score: 146.0 bits (367), Expect = 5.1e-32
Identity = 88/161 (54.66%), Postives = 108/161 (67.08%), Query Frame = 1 

Query: 2   AKYEASELIKKYPRNGDDV----QLKSFSDIAR-DSTQLNNQGKIPEILKDNKNVGLKLS 61
           AK EASELIKKY RNGD V    +L+SF   AR  + +  +   IP   K N+N+  K+S
Sbjct: 10  AKIEASELIKKYDRNGDGVLTKEELQSFLHDARLKNIRFVSSSTIP---KTNENLDQKVS 69

Query: 62  SNAHPKTSK--------------LQFSREQMKEIFKYHDSDKDGFLNLRELTKAFAFLGS 121
           SN   K  K              +  SREQ+KEIFKYHDS+KDGFL++RELTKAF  LGS
Sbjct: 70  SNTRIKPKKQLLDKAQDSLRQSNVPLSREQIKEIFKYHDSNKDGFLSIRELTKAFGSLGS 129

Query: 122 IIPFEKASYGMSYADANKDGLISEAELDKLIDYAQKFVKKK 144
           I+PF KA + M+YAD ++DGLISEAEL KLIDYA+K +KKK
Sbjct: 130 IVPFAKARHAMAYADVDEDGLISEAELHKLIDYAEKIIKKK 167

The following BLAST results are available for this feature:
BLAST of CmoCh04G020360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLF3_CUCSA1.1e-3857.67Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067670 PE=4 SV=1[more]
A0A0A0KMQ1_CUCSA5.7e-3855.83Uncharacterized protein OS=Cucumis sativus GN=Csa_5G067410 PE=4 SV=1[more]
A0A0A0LRC8_CUCSA5.3e-3656.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359950 PE=4 SV=1[more]
A0A0A0KIY4_CUCSA1.1e-3353.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G068170 PE=4 SV=1[more]
A0A0A0LKX1_CUCSA2.8e-2163.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G359940 PE=4 SV=1[more]
BLAST of CmoCh04G020360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh04G020360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194512|gb|KGN49689.1|1.6e-3857.67hypothetical protein Csa_5G067670 [Cucumis sativus][more]
gi|700194510|gb|KGN49687.1|8.2e-3855.83hypothetical protein Csa_5G067410 [Cucumis sativus][more]
gi|449470190|ref|XP_004152801.1|7.6e-3656.17PREDICTED: probable calcium-binding protein CML11 [Cucumis sativus][more]
gi|700194513|gb|KGN49690.1|1.6e-3353.01hypothetical protein Csa_5G068170 [Cucumis sativus][more]
gi|659089539|ref|XP_008445564.1|5.1e-3254.66PREDICTED: probable calcium-binding protein CML11 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G020360.1CmoCh04G020360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 71..131
score: 2.
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 68..103
score: 12.644coord: 104..139
score: 6
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 64..133
score: 1.0
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 64..131
score: 9.88
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 117..129
score: -coord: 81..93
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 64..136
score: 8.0
NoneNo IPR availablePANTHERPTHR10891:SF592CALCIUM-BINDING PROTEIN CML38-RELATEDcoord: 64..136
score: 8.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G020360Csa5G067670Cucumber (Chinese Long) v2cmocuB745
CmoCh04G020360MELO3C026462Melon (DHL92) v3.5.1cmomeB656
CmoCh04G020360CSPI05G01480Wild cucumber (PI 183967)cmocpiB754
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G020360Wild cucumber (PI 183967)cmocpiB741
CmoCh04G020360Watermelon (Charleston Gray)cmowcgB623
CmoCh04G020360Watermelon (97103) v1cmowmB733
CmoCh04G020360Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G020360Cucurbita pepo (Zucchini)cmocpeB682
CmoCh04G020360Cucurbita pepo (Zucchini)cmocpeB686
CmoCh04G020360Bottle gourd (USVL1VR-Ls)cmolsiB623
CmoCh04G020360Cucumber (Gy14) v2cgybcmoB645
CmoCh04G020360Melon (DHL92) v3.6.1cmomedB723
CmoCh04G020360Melon (DHL92) v3.6.1cmomedB746
CmoCh04G020360Watermelon (97103) v2cmowmbB699
CmoCh04G020360Watermelon (97103) v2cmowmbB712
CmoCh04G020360Wax gourdcmowgoB0906
CmoCh04G020360Wax gourdcmowgoB0914
CmoCh04G020360Cucumber (Gy14) v1cgycmoB0765
CmoCh04G020360Cucurbita maxima (Rimu)cmacmoB728