CmoCh04G019420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G019420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNonsense-mediated mRNA decay protein 2 isoform 1
LocationCmo_Chr04 : 9921413 .. 9925050 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAACAATTAATAGAGTATGAGTAATATCAGTATATCGATATAAAGTATATGTCGATAATAGAGTGTATGAATACTATATTAGTAACATATTAGCAGTATTATATACGAGTAGAACTTTTTATCTTTATTGTTTGGGTTGAGGTTAGGGTTAGATTTGCAAATCGGTGTCGGGATAATTTTCAGATTCGAGTCTGGCGACTCCGATTGGCGGTTGCATTTGAAGAACCCTCTAGGGTTTACATTCAGGTTCGCATTCTTTACACAATCTCGATTTGGTAGCTTCTCAAGTCTTGTGAATTTCACTTTTCTTTGATTCTATTATCAATTCTTAAGAAATTGCACCTAAAGGCCGATTTTCTTGGCTGCATTTCAACTTCATCTGTTGTTCGTTCATGGTTCCAATTTTCTGGAGATTGAGTGATATTATTTTTAATGCGTGTTCTTGAATTCAGTTAATGTCGGGTGTTTGTGGTCTTTCTTGTGCTTGGTCTGTTCGGTATAAGAAGTTATCTCGAATATTTATAGTCATTGCATAGATTTATGCCCAAATTGTTATTATTTTCGTGTAAAACTATGTATGCATTGCAAATATACTGAAAATTTTCGTAGGAAGGAAAACTACCTGACAGGAAATGACCAACAAATTGCACAATGTTCATAATTTTCTTTTAGATTCCATGCACTCTCCCAAGTGAAAGTGAGGAGCTGAATTGACTCGAGGGGAGGGCGGTGTTATAAATGAAGCATCAATATCTTTATTAGTTCTGAGTCTAGAAGAACCTTATCCTATTTAATTGTCTTTACTACCTTTAATACTCTGTGTTTGTATCTTTTTGGAATTTATTTTCGATCTTCGTTAAGTGTCTGGACGTTGTTGGATCTCTTCTATGATTTTTCCTCAGATTTCTTGCCTGGCCGTATTTCAAAATGGGTAAGAATCAAGCATACAAAGCGATGCAGAAAGCCAGGCTGGGATCCTCAAGTTCGGCTGGGCCGGTTGAAATTGAAGATGGAATGGTTTGTACCCTTCCACACTACTCCCCCTGCTTAGTCACTTTCCTTGAGACCGTCATAATTGAAAAATCGCTCTCATGATGTTCAATTTTATACCGACTCGATCGGTGGCATTTTCATGCTAGGGAAGTTTATAATCAGTCAATTTTATTTACTCTGTTTTAGTAGACTCAATGGGTCTCTGAATGTAATAAAATGTCAGTTTAGCTGTAGATTCATGATAAGTTGACTAAGGTTTAAGTTTACTTGATTGATTGGATTTGTATAATGTTTTATCGATTAAAAACATATATATCTATTGCATTCTTCTTTTTCCTAGGTTCCACAAAACATATAAGTCTCGCAGCAAATAGAAGAATATTTTGAGAAGGTGACATTTTGTGGTTTCTTTGTTGTAGTATCGATTAATATTTTCTTGGGGCACTCGGGGGGTTCGTAATCTTCTAAATTAGCGCCGGGTGTCGTTCCCCACCCTCCCCGGCATTTCTGTTGCATCACTTTCTTGTTTTCGATATCGTGACTGTAAAGTCTGACATTTTATTGGGAAGGATTGTTTTTCTCAAATCCTTTGTTGTCATTATTATACTCATTCTGAGTTCATACTTTTCTTTATCTAGCTTTAGTTTATTTTAAACACCTGTATCCTTTGCATCTGATGCCATTGGAATCGAGTCGCTACTTCTCTTGTATTGAAAATTCTAAAGAAACAAGACGAAGCTCATTTCGGTAACGAAACTTAATGATGCCTTGATTTAAGTGATATATTGGCTTGAGTTATGCAACTTCCGTTTAGAAATAGCATAGTAATCCTGCATAAGAATATGAATAAATAGTTATTTTCCCTTTATGAACCATCGATAAAGTAGTCTGACTCTGTCACTGCTTGGATGTTCATTTTGATGGCTATATGATCTGTTGGAGAGCAAATCCAAGTTAGCCCTGGATAATTGGTTGATGAGAGGCCTTTTATTAATGAAGTAAGATTTTTTATTTATTTGTATTTTCTTTGTACATTAGTTGAAATTCTGATGCTAAATTATTTATCAGTATATTAGGGATATTATCTTCTCCTTTATTGTTATTGATGAGGACTGTCTCAGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACGTCTCACACGATTACCTGGGAGGAATATAAGAAGAAGCAAAAGGTAAGTTTCCATGGACCGAATTCTTTGCCCAAGTGTATTTAACATATAATTGGTAACGTACGAGGATTATACACACCGTCCTCGACCATATTATATTGATGTCTTGTCAATATATAACCAGCACATTCTTTTTCTTATCACTAATAAAGTAATCACTTATGATTACATTAAGTATGACAGTTTTGCTTCTTCACGGACAACTGTTCGGTGTCGTATATTTTCATATCTGTCTTCGTTTAACATCATGGGGAATTGTTTGTTGCCATGATTATTAACTAGTTTACCTGACATCTTCATGCGGCGTCTGGTGCTACAGGAAGATGAGTTGAAAAAGGGAGAGCTAGAAGCAGATACAGATAGAATGATGAAAGAATATCGAGCGCAATTGGATGCTGAGCGGGCACGTAAACTTGCTCAGGGAAGAAATTGTTCTAGTAGCAAGAGTGGTCATGAAAAGGGTACGTTTGATGAATTTTGATATTAATTAGATACATGAGATCTTCTAAAGTGATTAGCATTACAGAAAGGAAGAACAGAGATTTAAAGAAGCGGAGCAAAAAAAGGAGAAAGGTGCTGACATTTTCCAACTCTTACTGCCCCATTCTGCTATATTTCTTTTTGATATTGTTTGCTAAATTTGAGCTGAAAAATGTTGCTGAACCTCGTCGACACGCCACTCAAGTTACTATGGTCATATCGATAGCATCGAAGTATTCTCATGTCAACCATCTTATATGCTTCGTTTTTTAGAAACCGAAAATGATGTAAAAATCAGTCCATTTTACTTTTTCTGTCGTAGCATTCGAGGAGGAAATCATCCGAGTCTAGCTCCTCATGTTCACCCTCGGATTCATCCAGCAGCGACGAAGAAGAAAGAGAATCTAGAAGATCCAGATCCAGATCCAGATCAAAGAGATCGAAGAGGGAAAAGAAGCACAAGTCTAGAACCAAGCACTCTTCAAGCGACGATGAAGAGGCCGATGGCCCCGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAAAGGGGCATTTGTTCTGTAATGTTTATAGAATTTCTAGTCTTGAAATGGCGTATTCGATCCTCGCCTTCTTTTTCTTCTAAATTTGCATTCAAGTATTGATTGTTGTTTCGACTCTTGGCTTCCTAGAGTAGGAGCGGTCTATGTCGTAGAAGATCGGATCAATGGTCGTAGGAGATCGGATCAATGGGACGAAGCAAGTCATTTAACAACCAGGTGATACAAAGCTGCAAATATTCAACCCAGAGAGTAACAACCAGTCTGTTCCATTTTCCTTTAGGATAATGCATGCGAAGGGAAGAAAAAATGCGATTAAAAGGCAAGTTTTATTGTATGTAAGCAAGAAAAAGGTTTTCAAAATACTCTAAATCCATGAACGACAGCTTTTATTGTAG

mRNA sequence

ATGCAACAATTAATAGAATTCGAGTCTGGCGACTCCGATTGGCGGTTGCATTTGAAGAACCCTCTAGGGTTTACATTCAGATTTCTTGCCTGGCCGTATTTCAAAATGGGTAAGAATCAAGCATACAAAGCGATGCAGAAAGCCAGGCTGGGATCCTCAAGTTCGGCTGGGCCGGTTGAAATTGAAGATGGAATGCAAATAGAAGAATATTTTGAGAAGGTGACATTTTGTGGTTTCTTTGTTGTAGTATCGATTAATATTTTCTTGGGGCACTCGGGGGCTTTAGTTTATTTTAAACACCTGTATCCTTTGCATCTGATGCCATTGGAATCGAGTCGCTACTTCTCTTGTATTGAAAATTCTAAAGAAACAAGACGAAGCTCATTTCGGCCTTTTATTAATGAAGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACGTCTCACACGATTACCTGGGAGGAATATAAGAAGAAGCAAAAGGAAGATGAGTTGAAAAAGGGAGAGCTAGAAGCAGATACAGATAGAATGATGAAAGAATATCGAGCGCAATTGGATGCTGAGCGGGCACGTAAACTTGCTCAGGGAAGAAATTGTTCTAGTAGCAAGAGTGGTCATGAAAAGGAAAGGAAGAACAGAGATTTAAAGAAGCGGAGCAAAAAAAGGAGAAAGCATTCGAGGAGGAAATCATCCGAGTCTAGCTCCTCATGTTCACCCTCGGATTCATCCAGCAGCGACGAAGAAGAAAGAGAATCTAGAAGATCCAGATCCAGATCCAGATCAAAGAGATCGAAGAGGGAAAAGAAGCACAAGTCTAGAACCAAGCACTCTTCAAGCGACGATGAAGAGGCCGATGGCCCCGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAAAGGGGCATTTGTTCTGTAATGTTTATAGAATTTCTAGTCTTGAAATGGCGTATTCGATCCTCGCCTTCTTTTTCTTCTAAATTTGCATTCAAGTATTGATTGTTGTTTCGACTCTTGGCTTCCTAGAGTAGGAGCGGTCTATGTCGTAGAAGATCGGATCAATGGTCGTAGGAGATCGGATCAATGGGACGAAGCAAGTCATTTAACAACCAGGTGATACAAAGCTGCAAATATTCAACCCAGAGAGTAACAACCAGTCTGTTCCATTTTCCTTTAGGATAATGCATGCGAAGGGAAGAAAAAATGCGATTAAAAGGCAAGTTTTATTGTATGTAAGCAAGAAAAAGGTTTTCAAAATACTCTAAATCCATGAACGACAGCTTTTATTGTAG

Coding sequence (CDS)

ATGCAACAATTAATAGAATTCGAGTCTGGCGACTCCGATTGGCGGTTGCATTTGAAGAACCCTCTAGGGTTTACATTCAGATTTCTTGCCTGGCCGTATTTCAAAATGGGTAAGAATCAAGCATACAAAGCGATGCAGAAAGCCAGGCTGGGATCCTCAAGTTCGGCTGGGCCGGTTGAAATTGAAGATGGAATGCAAATAGAAGAATATTTTGAGAAGGTGACATTTTGTGGTTTCTTTGTTGTAGTATCGATTAATATTTTCTTGGGGCACTCGGGGGCTTTAGTTTATTTTAAACACCTGTATCCTTTGCATCTGATGCCATTGGAATCGAGTCGCTACTTCTCTTGTATTGAAAATTCTAAAGAAACAAGACGAAGCTCATTTCGGCCTTTTATTAATGAAGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACGTCTCACACGATTACCTGGGAGGAATATAAGAAGAAGCAAAAGGAAGATGAGTTGAAAAAGGGAGAGCTAGAAGCAGATACAGATAGAATGATGAAAGAATATCGAGCGCAATTGGATGCTGAGCGGGCACGTAAACTTGCTCAGGGAAGAAATTGTTCTAGTAGCAAGAGTGGTCATGAAAAGGAAAGGAAGAACAGAGATTTAAAGAAGCGGAGCAAAAAAAGGAGAAAGCATTCGAGGAGGAAATCATCCGAGTCTAGCTCCTCATGTTCACCCTCGGATTCATCCAGCAGCGACGAAGAAGAAAGAGAATCTAGAAGATCCAGATCCAGATCCAGATCAAAGAGATCGAAGAGGGAAAAGAAGCACAAGTCTAGAACCAAGCACTCTTCAAGCGACGATGAAGAGGCCGATGGCCCCGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAA
Homology
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BLAST of CmoCh04G019420 vs. TrEMBL
Match: A0A0A0KWA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652810 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.7e-63
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSP WHAARLASLNTSHTITWEEYK+KQKEDELK+GELEADTDRMMKEYRAQLDA
Sbjct: 105 VDGSFHSPAWHAARLASLNTSHTITWEEYKRKQKEDELKRGELEADTDRMMKEYRAQLDA 164

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSK GHEK+RKNR+LKKRSKK+RKHS+RK SE SSS S SDSSSSDE
Sbjct: 165 ERARKLAHGRNRSSSKIGHEKDRKNRELKKRSKKKRKHSKRKLSECSSSSSSSDSSSSDE 224

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSD-DEEADGPVPLSRFFEKVKN 308
           EERESR  RS+S+SKRSKREKKH+SRTKHSSSD +EE DGPVPLSRFFEKVKN
Sbjct: 225 EERESR--RSKSKSKRSKREKKHRSRTKHSSSDNEEETDGPVPLSRFFEKVKN 275

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BLAST of CmoCh04G019420 vs. TrEMBL
Match: V4TPT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022332mg PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.9e-59
Identity = 140/172 (81.40%), Postives = 157/172 (91.28%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSPEWHAARLASL TSHT+TWEE+KKKQKEDEL+KGELE DTDRMM+EYRAQLDA
Sbjct: 30  VDGSFHSPEWHAARLASLKTSHTVTWEEFKKKQKEDELRKGELEKDTDRMMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLAQGRN S SKS  +K+RK+RDLKKRS K+RKHSRR+SS+SSSS S S+SSSSDE
Sbjct: 90  ERARKLAQGRNHSGSKSDRKKDRKDRDLKKRSSKKRKHSRRRSSDSSSSSSSSESSSSDE 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
           EERESR  +S+SRSK+SK+EKKH+SRTKHS SDDEEA GPVPLSRFFE  K+
Sbjct: 150 EERESR--KSKSRSKKSKKEKKHRSRTKHSGSDDEEAGGPVPLSRFFESTKS 199

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BLAST of CmoCh04G019420 vs. TrEMBL
Match: M5W3H0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011727mg PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.6e-58
Identity = 138/172 (80.23%), Postives = 158/172 (91.86%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSPEWHAARLASL TSHTITWEEYKKKQKEDE++KGELE DTDRMM+EYRAQLDA
Sbjct: 30  VDGSFHSPEWHAARLASLKTSHTITWEEYKKKQKEDEIRKGELEKDTDRMMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSKS  +K+RK++DLKKRS ++RKHSRR+SSESSSS S SDS SS+E
Sbjct: 90  ERARKLANGRNHSSSKSDRKKDRKDKDLKKRSSRKRKHSRRRSSESSSSSSSSDSYSSEE 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
           EER+S+  RS+SRSKR+++EKKH+SRTKHSSSDD+EADGPVPLSRFF  VK+
Sbjct: 150 EERDSK--RSKSRSKRTRKEKKHRSRTKHSSSDDDEADGPVPLSRFFGSVKS 199

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BLAST of CmoCh04G019420 vs. TrEMBL
Match: B9SFT0_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0722870 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 8.1e-58
Identity = 134/172 (77.91%), Postives = 158/172 (91.86%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFH+P WHAARLASLNTSHT+TWEE+K+KQKEDE++KGELEADTDRMM+EYRAQLDA
Sbjct: 30  VDGSFHTPAWHAARLASLNTSHTVTWEEFKRKQKEDEIRKGELEADTDRMMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSKS H+K+RK +D KKRS ++RKHSRR+SS+SSSS S SDSSSSD+
Sbjct: 90  ERARKLAHGRNHSSSKSNHKKDRKEKDSKKRSSRKRKHSRRRSSDSSSSSSSSDSSSSDD 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
           EERESR  RS+SRSKR+K+EKKH+SR+KHS +D+EEADGPVPLSRFF  +K+
Sbjct: 150 EERESR--RSKSRSKRTKKEKKHRSRSKHSGNDEEEADGPVPLSRFFGSLKS 199

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BLAST of CmoCh04G019420 vs. TrEMBL
Match: W9RFE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020376 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.1e-57
Identity = 139/172 (80.81%), Postives = 156/172 (90.70%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSPEWHAARLASL TSHTITWEE+KKKQKEDE++KGELE DTDRMM+EYRAQLDA
Sbjct: 30  VDGSFHSPEWHAARLASLKTSHTITWEEFKKKQKEDEMRKGELEKDTDRMMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLAQGRN S SKS  +++RK +DLKKRS K+RKHSRR+ SESSSS S SDSSSSDE
Sbjct: 90  ERARKLAQGRNHSGSKSDRKRDRKEKDLKKRSSKKRKHSRRRWSESSSSSSSSDSSSSDE 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
           E++ESR  RS+SRSKRSK+EKKH+SRTKHS SD+ EADGPVPLSRFFE VK+
Sbjct: 150 EKKESR--RSKSRSKRSKKEKKHRSRTKHSGSDN-EADGPVPLSRFFESVKS 198

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BLAST of CmoCh04G019420 vs. TAIR10
Match: AT3G59800.1 (AT3G59800.1 unknown protein)

HSP 1 Score: 177.6 bits (449), Expect = 1.2e-44
Identity = 117/173 (67.63%), Postives = 135/173 (78.03%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFH+PEWHAARLASL T+HTITWEEYK+KQKE+ELKKGELEADTD++M+EYRAQLDA
Sbjct: 30  VDGSFHTPEWHAARLASLKTTHTITWEEYKQKQKEEELKKGELEADTDKLMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ER+ KL++GRN SS KS   K++K+RD KK+  K+RKH    SSESSSS        SDE
Sbjct: 90  ERSLKLSKGRNYSSDKS--RKDKKDRDSKKKKSKKRKHY--SSSESSSS--------SDE 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKS-RTKHSSSDDEEADGPVPLSRFFEKVKN 308
           +E      RSRS SKRSK+EKKHKS R KHSS    E DGPVPLSRFF  +KN
Sbjct: 150 DESR----RSRSSSKRSKKEKKHKSSRDKHSSKSKHETDGPVPLSRFFGNLKN 186

[Close]
BLAST of CmoCh04G019420 vs. TAIR10
Match: AT2G43795.2 (AT2G43795.2 unknown protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.3e-22
Identity = 80/173 (46.24%), Postives = 116/173 (67.05%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           +DGSFHSPEWHAARLASL T+HT+TWEEYK+KQKE+ELKK E+EADTD++M+EYRAQLDA
Sbjct: 1   MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDA 60

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERA KL++GRN SS  S  +  R++  ++     R + ++R+S       + +   +   
Sbjct: 61  ERAMKLSKGRNYSSDIS-RKGRRESSQIESAEIPRGRKAKRESIRKGDHQTQAHLLNLQV 120

Query: 256 EERESRRSRSR-SRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
             + +  S+ +  R +R +     ++ T++ S D  EADGP P S+FF  +K+
Sbjct: 121 VTKTNLGSQGQVLRGQRGRGNTSLEADTQNQSKD--EADGPAPQSKFFGSLKS 170

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BLAST of CmoCh04G019420 vs. NCBI nr
Match: gi|659119505|ref|XP_008459692.1| (PREDICTED: protein FAM133 isoform X3 [Cucumis melo])

HSP 1 Score: 258.8 bits (660), Expect = 1.2e-65
Identity = 154/178 (86.52%), Postives = 166/178 (93.26%), Query Frame = 1 

Query: 131 PFINEVDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYR 190
           P INEVDGSFHSP WHAARLASLNTSHTITWEEYK+KQKEDELK+GELEADTDRMMKEYR
Sbjct: 4   PVINEVDGSFHSPAWHAARLASLNTSHTITWEEYKRKQKEDELKRGELEADTDRMMKEYR 63

Query: 191 AQLDAERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDS 250
           AQLDAERARKLA GRN SSSK+GHEK+RKNR+LKKRSKK+RKHS+RK SE SSS S SDS
Sbjct: 64  AQLDAERARKLAHGRNRSSSKTGHEKDRKNRELKKRSKKKRKHSKRKLSECSSSSSSSDS 123

Query: 251 SSSDEEERESRRSRSRSRSKRSKREKKHKSRTKHSSSD-DEEADGPVPLSRFFEKVKN 308
           SSSDEEERESR  RS+S+SKRSKREKKH+SRTKHSSSD +EE DGPVPLSRFFEKVK+
Sbjct: 124 SSSDEEERESR--RSKSKSKRSKREKKHRSRTKHSSSDNEEETDGPVPLSRFFEKVKH 179

[Close]
BLAST of CmoCh04G019420 vs. NCBI nr
Match: gi|449447633|ref|XP_004141572.1| (PREDICTED: protein FAM133 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSP WHAARLASLNTSHTITWEEYK+KQKEDELK+GELEADTDRMMKEYRAQLDA
Sbjct: 31  VDGSFHSPAWHAARLASLNTSHTITWEEYKRKQKEDELKRGELEADTDRMMKEYRAQLDA 90

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSK GHEK+RKNR+LKKRSKK+RKHS+RK SE SSS S SDSSSSDE
Sbjct: 91  ERARKLAHGRNRSSSKIGHEKDRKNRELKKRSKKKRKHSKRKLSECSSSSSSSDSSSSDE 150

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSD-DEEADGPVPLSRFFEKVKN 308
           EERESR  RS+S+SKRSKREKKH+SRTKHSSSD +EE DGPVPLSRFFEKVKN
Sbjct: 151 EERESR--RSKSKSKRSKREKKHRSRTKHSSSDNEEETDGPVPLSRFFEKVKN 201

[Close]
BLAST of CmoCh04G019420 vs. NCBI nr
Match: gi|700197550|gb|KGN52727.1| (hypothetical protein Csa_5G652810 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 151/173 (87.28%), Postives = 161/173 (93.06%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSP WHAARLASLNTSHTITWEEYK+KQKEDELK+GELEADTDRMMKEYRAQLDA
Sbjct: 105 VDGSFHSPAWHAARLASLNTSHTITWEEYKRKQKEDELKRGELEADTDRMMKEYRAQLDA 164

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSK GHEK+RKNR+LKKRSKK+RKHS+RK SE SSS S SDSSSSDE
Sbjct: 165 ERARKLAHGRNRSSSKIGHEKDRKNRELKKRSKKKRKHSKRKLSECSSSSSSSDSSSSDE 224

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSD-DEEADGPVPLSRFFEKVKN 308
           EERESR  RS+S+SKRSKREKKH+SRTKHSSSD +EE DGPVPLSRFFEKVKN
Sbjct: 225 EERESR--RSKSKSKRSKREKKHRSRTKHSSSDNEEETDGPVPLSRFFEKVKN 275

[Close]
BLAST of CmoCh04G019420 vs. NCBI nr
Match: gi|659119501|ref|XP_008459690.1| (PREDICTED: protein FAM133 isoform X1 [Cucumis melo])

HSP 1 Score: 250.4 bits (638), Expect = 4.1e-63
Identity = 150/173 (86.71%), Postives = 162/173 (93.64%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSP WHAARLASLNTSHTITWEEYK+KQKEDELK+GELEADTDRMMKEYRAQLDA
Sbjct: 31  VDGSFHSPAWHAARLASLNTSHTITWEEYKRKQKEDELKRGELEADTDRMMKEYRAQLDA 90

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLA GRN SSSK+GHEK+RKNR+LKKRSKK+RKHS+RK SE SSS S SDSSSSDE
Sbjct: 91  ERARKLAHGRNRSSSKTGHEKDRKNRELKKRSKKKRKHSKRKLSECSSSSSSSDSSSSDE 150

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSD-DEEADGPVPLSRFFEKVKN 308
           EERESR  RS+S+SKRSKREKKH+SRTKHSSSD +EE DGPVPLSRFFEKVK+
Sbjct: 151 EERESR--RSKSKSKRSKREKKHRSRTKHSSSDNEEETDGPVPLSRFFEKVKH 201

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BLAST of CmoCh04G019420 vs. NCBI nr
Match: gi|567899418|ref|XP_006442197.1| (hypothetical protein CICLE_v10022332mg [Citrus clementina])

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 140/172 (81.40%), Postives = 157/172 (91.28%), Query Frame = 1 

Query: 136 VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGELEADTDRMMKEYRAQLDA 195
           VDGSFHSPEWHAARLASL TSHT+TWEE+KKKQKEDEL+KGELE DTDRMM+EYRAQLDA
Sbjct: 30  VDGSFHSPEWHAARLASLKTSHTVTWEEFKKKQKEDELRKGELEKDTDRMMREYRAQLDA 89

Query: 196 ERARKLAQGRNCSSSKSGHEKERKNRDLKKRSKKRRKHSRRKSSESSSSCSPSDSSSSDE 255
           ERARKLAQGRN S SKS  +K+RK+RDLKKRS K+RKHSRR+SS+SSSS S S+SSSSDE
Sbjct: 90  ERARKLAQGRNHSGSKSDRKKDRKDRDLKKRSSKKRKHSRRRSSDSSSSSSSSESSSSDE 149

Query: 256 EERESRRSRSRSRSKRSKREKKHKSRTKHSSSDDEEADGPVPLSRFFEKVKN 308
           EERESR  +S+SRSK+SK+EKKH+SRTKHS SDDEEA GPVPLSRFFE  K+
Sbjct: 150 EERESR--KSKSRSKKSKKEKKHRSRTKHSGSDDEEAGGPVPLSRFFESTKS 199

The following BLAST results are available for this feature:
BLAST of CmoCh04G019420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G019420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWA3_CUCSA1.7e-6387.28Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652810 PE=4 SV=1[more]
V4TPT7_9ROSI1.9e-5981.40Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022332mg PE=4 SV=1[more]
M5W3H0_PRUPE1.6e-5880.23Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011727mg PE=4 SV=1[more]
B9SFT0_RICCO8.1e-5877.91Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0722870 PE=4 ... [more]
W9RFE6_9ROSA3.1e-5780.81Uncharacterized protein OS=Morus notabilis GN=L484_020376 PE=4 SV=1[more]
BLAST of CmoCh04G019420 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G59800.11.2e-4467.63 unknown protein[more]
AT2G43795.21.3e-2246.24 unknown protein[more]
BLAST of CmoCh04G019420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119505|ref|XP_008459692.1|1.2e-6586.52PREDICTED: protein FAM133 isoform X3 [Cucumis melo][more]
gi|449447633|ref|XP_004141572.1|2.4e-6387.28PREDICTED: protein FAM133 [Cucumis sativus][more]
gi|700197550|gb|KGN52727.1|2.4e-6387.28hypothetical protein Csa_5G652810 [Cucumis sativus][more]
gi|659119501|ref|XP_008459690.1|4.1e-6386.71PREDICTED: protein FAM133 isoform X1 [Cucumis melo][more]
gi|567899418|ref|XP_006442197.1|2.8e-5981.40hypothetical protein CICLE_v10022332mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G019420.1CmoCh04G019420.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36021FAMILY NOT NAMEDcoord: 136..307
score: 8.2E-84coord: 37..65
score: 8.2
NoneNo IPR availablePANTHERPTHR36021:SF1SUBFAMILY NOT NAMEDcoord: 37..65
score: 8.2E-84coord: 136..307
score: 8.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G019420CmaCh18G006790Cucurbita maxima (Rimu)cmacmoB422
CmoCh04G019420CmaCh04G018470Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G019420Cp4.1LG09g05710Cucurbita pepo (Zucchini)cmocpeB646
CmoCh04G019420Cp4.1LG01g16250Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G019420Carg24404Silver-seed gourdcarcmoB0187
CmoCh04G019420Carg21213Silver-seed gourdcarcmoB0945
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G019420CmoCh18G006440Cucurbita moschata (Rifu)cmocmoB337
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G019420Cucurbita moschata (Rifu)cmocmoB147
CmoCh04G019420Cucumber (Gy14) v1cgycmoB0123
CmoCh04G019420Cucurbita maxima (Rimu)cmacmoB189
CmoCh04G019420Wild cucumber (PI 183967)cmocpiB748
CmoCh04G019420Cucumber (Chinese Long) v2cmocuB739
CmoCh04G019420Melon (DHL92) v3.5.1cmomeB632
CmoCh04G019420Watermelon (Charleston Gray)cmowcgB631
CmoCh04G019420Watermelon (97103) v1cmowmB732
CmoCh04G019420Cucurbita pepo (Zucchini)cmocpeB710
CmoCh04G019420Bottle gourd (USVL1VR-Ls)cmolsiB661
CmoCh04G019420Cucumber (Gy14) v2cgybcmoB653
CmoCh04G019420Melon (DHL92) v3.6.1cmomedB721
CmoCh04G019420Cucumber (Chinese Long) v3cmocucB0875
CmoCh04G019420Watermelon (97103) v2cmowmbB707