CmaCh18G006790 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh18G006790
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nonsense-mediated mRNA decay protein 2 isoform 1
Location	Cma_Chr18 : 6275939 .. 6279715 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAATTCGGTGTCGGGACAATTCAGATTCGAGTCTGGCGACTCCGATTGCCGGTTGCCTTTGAAGAACCCTCTAGGGTTTACTCTCAGGGTCCTTTTCTTTACACAATTTTGATTTGGTAGCTTCTTTACCTCTCCCAATTTCACTTTTTTTTGCTTCTATTATCAATTCTCAACAATTTTTAGCTAAACCCCCATTTTCTTGCCTGCATTTGAACTTCATCTGTTCTTCGTTTATGATTCCAGTTTTCTGGGAAATTGAGACAAAATTCCTCCAAGTATTCCTCGATTCAATCAAGTCCCGGAGTTCGTCGTCTTCCTTGTTCTTGGTCTGCTCACTATAAGAAGTCATCTTCATTTTTTTTTTATCGTTTTTGTATAGATTTATGACCAATTGGATATTATTTCTGGGTAAATCATTCAAGTATATGTTACAAAGCTATTGAAGAACAACTACCCCATAGGAAAGAGCCAACGAATTTGCCTAGTTCTCGTAATTTTCTCTTAGGCAACGCTCACATGTAACAGTGAAGAGCTGAGCTGACTCGGTCATTCCTTTTCGTTTACTTGTTTTTCATATCTAAATCCGTTGTGTTTGTATGTTTTTGGTTGTTTATATCCGATTTTCGTTTAGTATCTGTATGTTGCTGGGATTTATACTCTCATTTTCCTCAGATTTCTTGCCTGGCTGTATTTCAAAATGGGTAAGAATCAAGCGTACAAAGCGATGCAGAAAGCCAGGCTGGGATCCACAAGCGCAGCTGGGCCAGTAGAGGTTGAAGATGGAATGGTTTGTACCCTTCCACTCTACTACCCCTGGGGAGTTAGTTTCCCTGAGACGTTCATAATTGAAATACTTATCTCTTGTGATGTTCGATTTCTATACTAACTCAATCGGAAGTTTATAATCCGCAAATGTTATTACGTCATTTAGTAGACACGATGGGTCGTTGGATGTAAGAAAATGTCGGTTTAGCTGTAGATTCACGATAAGTTGTCCATGGTTCAAATTGACTTGACTTAACTGTTTGAATTTATACAATGTTTAGCAGTTTAAAAAGAAACATATATGGCAATAGCATCCTTTTTTTGCCTAGAACATTTGGAGATGGTTGCATTCTATGGTTTCCCTGTTCTAGTCGTTGTTAGATATTGATGACTGAAGTTTGACATTTTAATTGGAAGGATTGTTATTCTCCAATCATTTGGTATTATTACATTCATTTTTATTTCATATTTTTATCTGGCTTTGATTTTATTTGAGCATCTATAAATTTTGTCGCATATGGTACCGATAGAATGTAGTTGCTACTTCTCTTATATTTAGAAAAAGGCTTCTTCTGGGTAAATGATACTTAATGGTGCTTTGATATGAATGATATATTGGCACGAATAGTTATTTTCCCTGTACGAACCATCTATAAAGTAGTCTGACTCTGTCATTGCTTGGATCTTCATTTTGATGACTATATGATCTGTTGGAGAACGAAATCCAAGTTAGCCCTGGATAATTGTTAGATGACAGGCCTGTTGTTAATGAAGTAAGATTTTTTCTTTATATATATATATATATATATTTGTATATACGTTGAGATTCTGATGCTAAATTATTCAGTGGCATATTTGGGGTTATTATCTTCTCCTTTATTGTTATTGACGAGGACTGTCTCAGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACTTCTCACACGATTACATGGGAGGAATATAAAAAGAAGCAAAAGGTAAGTTTTCGTGGGTTAAATTTTCCAATTATTTCTTCATATATTTGTGCTTAGATTTGGTTGTCTTAACTTCATTCACCGTTGCAAATGCTTTGCCCAATTGGTAACATACTAGTATGGAACACGCTGTCATTGATGACATTGTGGTGTTAATTTGTAATCATCTTCTTTTTCTTATCAGTAATATAGTTATCCAGCATCATAGTTTTCTTTTTTTTACTGTGATACATAAAGAATCTCATGGTTGCATTGAGAACGACAGTTTTTCTTGTAACCGCTCAAGCCTACCGCTAGAAAATATTGTCCTCGTTGGGCCTTTCCCTTTCAGGCTTCCCCTAAAGGTTTTTAAAATGCGTCGGCTAGGGAGAGGTTTCCACACCCTTATAAAGAATGCTTCGTTCTCCTCCTCAACCAATGTGGGATCTCACAAGCCACCCCATTCGGGGTCCAGCATCCTCACTAGTACTCGTTTCCTTCTCCAATCGATGTGGGACTCCCCTTGGAGGCCTAGCATTCTTGCTGGCACACCGCCTTGTGTCCATCCCTTTTGGGGCTCAGCCTCCTAGTTGGCACATTGCTTGGTGTCTGGTTCTGATACCATTTATGACGAACCAAGCCCACTGCTAGCAAATATTGTCCTCTTTGACCTTTTCCTTTCAAGTTTTCCCTCAAGGTTTTAAAACGCGTCTGCTAGGGAGAGTTTTCCACACCCTTATAAAGAATACTTCGTTATCTTCTCCAACTGTCGTGGGATCTCACAATTCTTCTCCACATATAACCTATCATTGTCCGATATTTTGCATACCTGCCACATTTTAGCATCATGGGAATTGTTTGTTGCCATGATTCTTATCAAATTTACCTGACATCTCCATGTTCTATTCGGTTTGGTGCAACAGGAAGACGAGTTGAAAAAGGGAGAGATGGAAGCAGATACAGATAGAATGATGAAAGAATATAGAGCGCAGTTGGATGCTGAGCGGGCACGCAAACTTGCTCATGGGAGAAATCGCTCCGGTAGCAAGTCTGGTCATGAAAAAGGTATATACTTGATGAGTTCTTATATTAATATTAGTTAGATAAATGAGATCTAAAGTCATCGGCATTACAGATAGGAAGAACAGAGACTTAAAGAAACGGAGCAAAAAAAAGAGAAAGGTGCCAACATTTTTCAACTCTTACTATCATGATTCCGCTATATATTGTTTTCATAATGTTTTTTTCAATACGAGTTCGAAAATGTTGGTGAGCTTGATGTTGATGATGCCTCTCAAGTTACTATAGTCATATATTTTGTATCAACACTATGACATGCTCACAAGCGACATGAAAAATTCTGCAAAGTTATTATCATTCGTTATCCGTTATCTCGATTCTATCTTGTTAACCATCTTATACCGACACTTCCTTCCAGCAACCGTGAATCTCTTGATCTAAAAAAATAGTCTAATTTAGTTTTTACTGTTGTAGCATTCCAAGAGGAAATCGTCTGAGTCTAGCTCTTCTAGTTCATCCTCGGATTCATCCAGCAGCGACGAAGAGGAAAGGGAATCTAGAAGATCAAAGTCGAGATCGAAAAGATCGAAGAGGGAAAAGAAGCATAGGTCGAGAAGCAAGCAGTCTTCCAGTGATGATGAAGAGGCGGATGGTCCTGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAAGGGGTATTTTGTTCTGTAACGTTTATAAAATTTCCAGTCTTGAAATAGCATATTTGATCCTCCTCCTCTTCCTTTTTTCTCCTGAATTTGCATTTACGCATTGTTGTTTCTATTATTGGCTTTCTAAAGTTGGAGCGATCCATGTCGTAGAAGATTTCGACCCGTGTTGATGGTGCGATTGATCAAAACCCTAATACACTTGGGTTAGGTTCGAGAAGCTTTTAGACTCACCTGAAATTTTGGTTTGGTGACCTTATTAAGCTTTACGGTTCAACTCTAATCCGTCAAATTTAATTGAATTTGGGGACCGAG

mRNA sequence

GAGAATTCGGTGTCGGGACAATTCAGATTCGAGTCTGGCGACTCCGATTGCCGGTTGCCTTTGAAGAACCCTCTAGGGTTTACTCTCAGGGTCCTTTTCTTTACACAATTTTGATTTGTTTTCTGGGAAATTGAGACAAAATTCCTCCAAGTATTCCTCGATTCAATCAAGTCCCGGAGTTCGTCGTCTTCCTTGTTCTTGATTTCTTGCCTGGCTGTATTTCAAAATGGGTAAGAATCAAGCGTACAAAGCGATGCAGAAAGCCAGGCTGGGATCCACAAGCGCAGCTGGGCCAGTAGAGGTTGAAGATGGAATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACTTCTCACACGATTACATGGGAGGAATATAAAAAGAAGCAAAAGGAAGACGAGTTGAAAAAGGGAGAGATGGAAGCAGATACAGATAGAATGATGAAAGAATATAGAGCGCAGTTGGATGCTGAGCGGGCACGCAAACTTGCTCATGGGAGAAATCGCTCCGGTAGCAAGTCTGGTCATGAAAAAGATAGGAAGAACAGAGACTTAAAGAAACGGAGCAAAAAAAAGAGAAAGCATTCCAAGAGGAAATCGTCTGAGTCTAGCTCTTCTAGTTCATCCTCGGATTCATCCAGCAGCGACGAAGAGGAAAGGGAATCTAGAAGATCAAAGTCGAGATCGAAAAGATCGAAGAGGGAAAAGAAGCATAGGTCGAGAAGCAAGCAGTCTTCCAGTGATGATGAAGAGGCGGATGGTCCTGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAAGGGGTATTTTGTTCTGTAACGTTTATAAAATTTCCAGTCTTGAAATAGCATATTTGATCCTCCTCCTCTTCCTTTTTTCTCCTGAATTTGCATTTACGCATTGTTGTTTCTATTATTGGCTTTCTAAAGTTGGAGCGATCCATGTCGTAGAAGATTTCGACCCGTGTTGATGGTGCGATTGATCAAAACCCTAATACACTTGGGTTAGGTTCGAGAAGCTTTTAGACTCACCTGAAATTTTGGTTTGGTGACCTTATTAAGCTTTACGGTTCAACTCTAATCCGTCAAATTTAATTGAATTTGGGGACCGAG

Coding sequence (CDS)

ATGGGTAAGAATCAAGCGTACAAAGCGATGCAGAAAGCCAGGCTGGGATCCACAAGCGCAGCTGGGCCAGTAGAGGTTGAAGATGGAATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCTCGTTTGGCCAGCCTTAATACTTCTCACACGATTACATGGGAGGAATATAAAAAGAAGCAAAAGGAAGACGAGTTGAAAAAGGGAGAGATGGAAGCAGATACAGATAGAATGATGAAAGAATATAGAGCGCAGTTGGATGCTGAGCGGGCACGCAAACTTGCTCATGGGAGAAATCGCTCCGGTAGCAAGTCTGGTCATGAAAAAGATAGGAAGAACAGAGACTTAAAGAAACGGAGCAAAAAAAAGAGAAAGCATTCCAAGAGGAAATCGTCTGAGTCTAGCTCTTCTAGTTCATCCTCGGATTCATCCAGCAGCGACGAAGAGGAAAGGGAATCTAGAAGATCAAAGTCGAGATCGAAAAGATCGAAGAGGGAAAAGAAGCATAGGTCGAGAAGCAAGCAGTCTTCCAGTGATGATGAAGAGGCGGATGGTCCTGTGCCACTTTCAAGATTCTTTGAGAAAGTGAAGAATTAA

Protein sequence

MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKKRSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSSDDEEADGPVPLSRFFEKVKN

Homology

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BLAST of CmaCh18G006790 vs. TrEMBL
Match: A0A0A0KWA3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652810 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 4.5e-81
Identity = 181/201 (90.05%), Postives = 191/201 (95.02%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQKARLGS+S+ GP E+EDGMVDGSFHSP WHAARLASLNTSHTITWEEYK
Sbjct: 75  MGKNQAYKAMQKARLGSSSSTGPAEIEDGMVDGSFHSPAWHAARLASLNTSHTITWEEYK 134

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDELK+GE+EADTDRMMKEYRAQLDAERARKLAHGRNRS SK GHEKDRKNR+LKK
Sbjct: 135 RKQKEDELKRGELEADTDRMMKEYRAQLDAERARKLAHGRNRSSSKIGHEKDRKNRELKK 194

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RSKKKRKHSKRK SE SSSSSSSDSSSSDEEERESRRSKS+SKRSKREKKHRSR+K SSS
Sbjct: 195 RSKKKRKHSKRKLSECSSSSSSSDSSSSDEEERESRRSKSKSKRSKREKKHRSRTKHSSS 254

Query: 181 D-DEEADGPVPLSRFFEKVKN 201
           D +EE DGPVPLSRFFEKVKN
Sbjct: 255 DNEEETDGPVPLSRFFEKVKN 275

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BLAST of CmaCh18G006790 vs. TrEMBL
Match: V4TPT7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022332mg PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 1.5e-73
Identity = 167/200 (83.50%), Postives = 186/200 (93.00%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+ARLGS+SAA P E+EDGMVDGSFHSPEWHAARLASL TSHT+TWEE+K
Sbjct: 1   MGKNQAYKAMQRARLGSSSAA-PDEIEDGMVDGSFHSPEWHAARLASLKTSHTVTWEEFK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           KKQKEDEL+KGE+E DTDRMM+EYRAQLDAERARKLA GRN SGSKS  +KDRK+RDLKK
Sbjct: 61  KKQKEDELRKGELEKDTDRMMREYRAQLDAERARKLAQGRNHSGSKSDRKKDRKDRDLKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS KKRKHS+R+SS+SSSSSSSS+SSSSDEEERESR+SKSRSK+SK+EKKHRSR+K S S
Sbjct: 121 RSSKKRKHSRRRSSDSSSSSSSSESSSSDEEERESRKSKSRSKKSKKEKKHRSRTKHSGS 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           DDEEA GPVPLSRFFE  K+
Sbjct: 181 DDEEAGGPVPLSRFFESTKS 199

[Close]

BLAST of CmaCh18G006790 vs. TrEMBL
Match: B9SFT0_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0722870 PE=4 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.0e-73
Identity = 164/200 (82.00%), Postives = 187/200 (93.50%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+ARLGS+SA GP EVEDGMVDGSFH+P WHAARLASLNTSHT+TWEE+K
Sbjct: 1   MGKNQAYKAMQRARLGSSSA-GPEEVEDGMVDGSFHTPAWHAARLASLNTSHTVTWEEFK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDE++KGE+EADTDRMM+EYRAQLDAERARKLAHGRN S SKS H+KDRK +D KK
Sbjct: 61  RKQKEDEIRKGELEADTDRMMREYRAQLDAERARKLAHGRNHSSSKSNHKKDRKEKDSKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS +KRKHS+R+SS+SSSSSSSSDSSSSD+EERESRRSKSRSKR+K+EKKHRSRSK S +
Sbjct: 121 RSSRKRKHSRRRSSDSSSSSSSSDSSSSDDEERESRRSKSRSKRTKKEKKHRSRSKHSGN 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           D+EEADGPVPLSRFF  +K+
Sbjct: 181 DEEEADGPVPLSRFFGSLKS 199

[Close]

BLAST of CmaCh18G006790 vs. TrEMBL
Match: M5W3H0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011727mg PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.2e-72
Identity = 165/200 (82.50%), Postives = 187/200 (93.50%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+ARLGS+SA GP EVEDGMVDGSFHSPEWHAARLASL TSHTITWEEYK
Sbjct: 1   MGKNQAYKAMQRARLGSSSA-GPDEVEDGMVDGSFHSPEWHAARLASLKTSHTITWEEYK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           KKQKEDE++KGE+E DTDRMM+EYRAQLDAERARKLA+GRN S SKS  +KDRK++DLKK
Sbjct: 61  KKQKEDEIRKGELEKDTDRMMREYRAQLDAERARKLANGRNHSSSKSDRKKDRKDKDLKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS +KRKHS+R+SSESSSSSSSSDS SS+EEER+S+RSKSRSKR+++EKKHRSR+K SSS
Sbjct: 121 RSSRKRKHSRRRSSESSSSSSSSDSYSSEEEERDSKRSKSRSKRTRKEKKHRSRTKHSSS 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           DD+EADGPVPLSRFF  VK+
Sbjct: 181 DDDEADGPVPLSRFFGSVKS 199

[Close]

BLAST of CmaCh18G006790 vs. TrEMBL
Match: W9RFE6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020376 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.2e-71
Identity = 166/200 (83.00%), Postives = 185/200 (92.50%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+A+LGS+SA GP EVEDGMVDGSFHSPEWHAARLASL TSHTITWEE+K
Sbjct: 1   MGKNQAYKAMQRAKLGSSSA-GPDEVEDGMVDGSFHSPEWHAARLASLKTSHTITWEEFK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           KKQKEDE++KGE+E DTDRMM+EYRAQLDAERARKLA GRN SGSKS  ++DRK +DLKK
Sbjct: 61  KKQKEDEMRKGELEKDTDRMMREYRAQLDAERARKLAQGRNHSGSKSDRKRDRKEKDLKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS KKRKHS+R+ SESSSSSSSSDSSSSDEE++ESRRSKSRSKRSK+EKKHRSR+K S S
Sbjct: 121 RSSKKRKHSRRRWSESSSSSSSSDSSSSDEEKKESRRSKSRSKRSKKEKKHRSRTKHSGS 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           D+ EADGPVPLSRFFE VK+
Sbjct: 181 DN-EADGPVPLSRFFESVKS 198

[Close]

BLAST of CmaCh18G006790 vs. TAIR10
Match: AT3G59800.1 (AT3G59800.1 unknown protein)

HSP 1 Score: 214.2 bits (544), Expect = 7.6e-56
Identity = 138/201 (68.66%), Postives = 160/201 (79.60%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ++R+GS+SA  P EVEDGMVDGSFH+PEWHAARLASL T+HTITWEEYK
Sbjct: 1   MGKNQAYKAMQRSRVGSSSAQ-PDEVEDGMVDGSFHTPEWHAARLASLKTTHTITWEEYK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKE+ELKKGE+EADTD++M+EYRAQLDAER+ KL+ GRN S  KS   KD+K+RD KK
Sbjct: 61  QKQKEEELKKGELEADTDKLMREYRAQLDAERSLKLSKGRNYSSDKS--RKDKKDRDSKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHR-SRSKQSS 180
           +  KKRKH           SSS  SSSSDE+  ESRRS+S SKRSK+EKKH+ SR K SS
Sbjct: 121 KKSKKRKH----------YSSSESSSSSDED--ESRRSRSSSKRSKKEKKHKSSRDKHSS 180

Query: 181 SDDEEADGPVPLSRFFEKVKN 201
               E DGPVPLSRFF  +KN
Sbjct: 181 KSKHETDGPVPLSRFFGNLKN 186

[Close]

BLAST of CmaCh18G006790 vs. TAIR10
Match: AT2G43795.2 (AT2G43795.2 unknown protein)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-20
Identity = 77/171 (45.03%), Postives = 112/171 (65.50%), Query Frame = 1


Query: 31  VDGSFHSPEWHAARLASLNTSHTITWEEYKKKQKEDELKKGEMEADTDRMMKEYRAQLDA 90
           +DGSFHSPEWHAARLASL T+HT+TWEEYK+KQKE+ELKK E+EADTD++M+EYRAQLDA
Sbjct: 1   MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDA 60

Query: 91  ERARKLAHGRNRSGSKSGHEKDRKNRDLKKRSKKKRKHSKRKSSESSSSSSSSDSSSSDE 150
           ERA KL+ GRN S S    +  R++  ++     + + +KR+S       + +   +   
Sbjct: 61  ERAMKLSKGRNYS-SDISRKGRRESSQIESAEIPRGRKAKRESIRKGDHQTQAHLLNLQV 120

Query: 151 EERESRRSKSRSKRSKREKKHRS-RSKQSSSDDEEADGPVPLSRFFEKVKN 201
             + +  S+ +  R +R + + S  +   +   +EADGP P S+FF  +K+
Sbjct: 121 VTKTNLGSQGQVLRGQRGRGNTSLEADTQNQSKDEADGPAPQSKFFGSLKS 170

[Close]

BLAST of CmaCh18G006790 vs. NCBI nr
Match: gi|449447633|ref|XP_004141572.1| (PREDICTED: protein FAM133 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 6.4e-81
Identity = 181/201 (90.05%), Postives = 191/201 (95.02%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQKARLGS+S+ GP E+EDGMVDGSFHSP WHAARLASLNTSHTITWEEYK
Sbjct: 1   MGKNQAYKAMQKARLGSSSSTGPAEIEDGMVDGSFHSPAWHAARLASLNTSHTITWEEYK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDELK+GE+EADTDRMMKEYRAQLDAERARKLAHGRNRS SK GHEKDRKNR+LKK
Sbjct: 61  RKQKEDELKRGELEADTDRMMKEYRAQLDAERARKLAHGRNRSSSKIGHEKDRKNRELKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RSKKKRKHSKRK SE SSSSSSSDSSSSDEEERESRRSKS+SKRSKREKKHRSR+K SSS
Sbjct: 121 RSKKKRKHSKRKLSECSSSSSSSDSSSSDEEERESRRSKSKSKRSKREKKHRSRTKHSSS 180

Query: 181 D-DEEADGPVPLSRFFEKVKN 201
           D +EE DGPVPLSRFFEKVKN
Sbjct: 181 DNEEETDGPVPLSRFFEKVKN 201

[Close]

BLAST of CmaCh18G006790 vs. NCBI nr
Match: gi|700197550|gb|KGN52727.1| (hypothetical protein Csa_5G652810 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 6.4e-81
Identity = 181/201 (90.05%), Postives = 191/201 (95.02%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQKARLGS+S+ GP E+EDGMVDGSFHSP WHAARLASLNTSHTITWEEYK
Sbjct: 75  MGKNQAYKAMQKARLGSSSSTGPAEIEDGMVDGSFHSPAWHAARLASLNTSHTITWEEYK 134

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDELK+GE+EADTDRMMKEYRAQLDAERARKLAHGRNRS SK GHEKDRKNR+LKK
Sbjct: 135 RKQKEDELKRGELEADTDRMMKEYRAQLDAERARKLAHGRNRSSSKIGHEKDRKNRELKK 194

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RSKKKRKHSKRK SE SSSSSSSDSSSSDEEERESRRSKS+SKRSKREKKHRSR+K SSS
Sbjct: 195 RSKKKRKHSKRKLSECSSSSSSSDSSSSDEEERESRRSKSKSKRSKREKKHRSRTKHSSS 254

Query: 181 D-DEEADGPVPLSRFFEKVKN 201
           D +EE DGPVPLSRFFEKVKN
Sbjct: 255 DNEEETDGPVPLSRFFEKVKN 275

[Close]

BLAST of CmaCh18G006790 vs. NCBI nr
Match: gi|659119501|ref|XP_008459690.1| (PREDICTED: protein FAM133 isoform X1 [Cucumis melo])

HSP 1 Score: 308.1 bits (788), Expect = 1.1e-80
Identity = 180/201 (89.55%), Postives = 192/201 (95.52%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQKARLGS+S+ GP E+EDGMVDGSFHSP WHAARLASLNTSHTITWEEYK
Sbjct: 1   MGKNQAYKAMQKARLGSSSSTGPAEIEDGMVDGSFHSPAWHAARLASLNTSHTITWEEYK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDELK+GE+EADTDRMMKEYRAQLDAERARKLAHGRNRS SK+GHEKDRKNR+LKK
Sbjct: 61  RKQKEDELKRGELEADTDRMMKEYRAQLDAERARKLAHGRNRSSSKTGHEKDRKNRELKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RSKKKRKHSKRK SE SSSSSSSDSSSSDEEERESRRSKS+SKRSKREKKHRSR+K SSS
Sbjct: 121 RSKKKRKHSKRKLSECSSSSSSSDSSSSDEEERESRRSKSKSKRSKREKKHRSRTKHSSS 180

Query: 181 D-DEEADGPVPLSRFFEKVKN 201
           D +EE DGPVPLSRFFEKVK+
Sbjct: 181 DNEEETDGPVPLSRFFEKVKH 201

[Close]

BLAST of CmaCh18G006790 vs. NCBI nr
Match: gi|802616921|ref|XP_012075393.1| (PREDICTED: protein FAM133 [Jatropha curcas])

HSP 1 Score: 285.0 bits (728), Expect = 9.9e-74
Identity = 165/200 (82.50%), Postives = 189/200 (94.50%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+ARLGS+SA GP E+EDGMVDGSFHSPEWHAARLASL TSHTITWEE+K
Sbjct: 1   MGKNQAYKAMQRARLGSSSA-GPEEIEDGMVDGSFHSPEWHAARLASLKTSHTITWEEFK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           +KQKEDE+KKGE+EADTDRMM+EYRAQLDAERARKLAHGRN S SKS H+KD+K++DLKK
Sbjct: 61  QKQKEDEMKKGELEADTDRMMREYRAQLDAERARKLAHGRNHSSSKSNHKKDKKDKDLKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS +KRKHS+R+SS+ SSS SSSDSSSSD+EERESRRSKSRSKR+K+EKKHRS+SK+SSS
Sbjct: 121 RSSRKRKHSRRRSSDYSSSGSSSDSSSSDDEERESRRSKSRSKRTKKEKKHRSKSKRSSS 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           +DEEADGPVPLSRFF  +K+
Sbjct: 181 EDEEADGPVPLSRFFGSMKS 199

[Close]

BLAST of CmaCh18G006790 vs. NCBI nr
Match: gi|567899418|ref|XP_006442197.1| (hypothetical protein CICLE_v10022332mg [Citrus clementina])

HSP 1 Score: 283.9 bits (725), Expect = 2.2e-73
Identity = 167/200 (83.50%), Postives = 186/200 (93.00%), Query Frame = 1


Query: 1   MGKNQAYKAMQKARLGSTSAAGPVEVEDGMVDGSFHSPEWHAARLASLNTSHTITWEEYK 60
           MGKNQAYKAMQ+ARLGS+SAA P E+EDGMVDGSFHSPEWHAARLASL TSHT+TWEE+K
Sbjct: 1   MGKNQAYKAMQRARLGSSSAA-PDEIEDGMVDGSFHSPEWHAARLASLKTSHTVTWEEFK 60

Query: 61  KKQKEDELKKGEMEADTDRMMKEYRAQLDAERARKLAHGRNRSGSKSGHEKDRKNRDLKK 120
           KKQKEDEL+KGE+E DTDRMM+EYRAQLDAERARKLA GRN SGSKS  +KDRK+RDLKK
Sbjct: 61  KKQKEDELRKGELEKDTDRMMREYRAQLDAERARKLAQGRNHSGSKSDRKKDRKDRDLKK 120

Query: 121 RSKKKRKHSKRKSSESSSSSSSSDSSSSDEEERESRRSKSRSKRSKREKKHRSRSKQSSS 180
           RS KKRKHS+R+SS+SSSSSSSS+SSSSDEEERESR+SKSRSK+SK+EKKHRSR+K S S
Sbjct: 121 RSSKKRKHSRRRSSDSSSSSSSSESSSSDEEERESRKSKSRSKKSKKEKKHRSRTKHSGS 180

Query: 181 DDEEADGPVPLSRFFEKVKN 201
           DDEEA GPVPLSRFFE  K+
Sbjct: 181 DDEEAGGPVPLSRFFESTKS 199

The following BLAST results are available for this feature:

BLAST of CmaCh18G006790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh18G006790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWA3_CUCSA	4.5e-81	90.05	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G652810 PE=4 SV=1	[more]
V4TPT7_9ROSI	1.5e-73	83.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022332mg PE=4 SV=1	[more]
B9SFT0_RICCO	2.0e-73	82.00	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0722870 PE=4 ...	[more]
M5W3H0_PRUPE	2.2e-72	82.50	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011727mg PE=4 SV=1	[more]
W9RFE6_9ROSA	3.2e-71	83.00	Uncharacterized protein OS=Morus notabilis GN=L484_020376 PE=4 SV=1	[more]

BLAST of CmaCh18G006790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G59800.1	7.6e-56	68.66	unknown protein	[more]
AT2G43795.2	1.3e-20	45.03	unknown protein	[more]

BLAST of CmaCh18G006790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449447633\|ref\|XP_004141572.1\|	6.4e-81	90.05	PREDICTED: protein FAM133 [Cucumis sativus]	[more]
gi\|700197550\|gb\|KGN52727.1\|	6.4e-81	90.05	hypothetical protein Csa_5G652810 [Cucumis sativus]	[more]
gi\|659119501\|ref\|XP_008459690.1\|	1.1e-80	89.55	PREDICTED: protein FAM133 isoform X1 [Cucumis melo]	[more]
gi\|802616921\|ref\|XP_012075393.1\|	9.9e-74	82.50	PREDICTED: protein FAM133 [Jatropha curcas]	[more]
gi\|567899418\|ref\|XP_006442197.1\|	2.2e-73	83.50	hypothetical protein CICLE_v10022332mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh18G006790.1	CmaCh18G006790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36021	FAMILY NOT NAMED	coord: 2..200 score: 1.0
None	No IPR available	PANTHER	PTHR36021:SF1	SUBFAMILY NOT NAMED	coord: 2..200 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh18G006790	CmoCh04G019420	Cucurbita moschata (Rifu)	cmacmoB422
CmaCh18G006790	Cp4.1LG09g05710	Cucurbita pepo (Zucchini)	cmacpeB415
CmaCh18G006790	Cp4.1LG01g16250	Cucurbita pepo (Zucchini)	cmacpeB431
CmaCh18G006790	Carg24404	Silver-seed gourd	carcmaB0178
CmaCh18G006790	Carg21213	Silver-seed gourd	carcmaB0970

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh18G006790	CmaCh04G018470	Cucurbita maxima (Rimu)	cmacmaB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh18G006790	Cucumber (Chinese Long) v3	cmacucB0495
CmaCh18G006790	Watermelon (97103) v2	cmawmbB407
CmaCh18G006790	Cucurbita maxima (Rimu)	cmacmaB178
CmaCh18G006790	Cucumber (Gy14) v1	cgycmaB0125
CmaCh18G006790	Cucurbita moschata (Rifu)	cmacmoB392
CmaCh18G006790	Cucurbita moschata (Rifu)	cmacmoB410
CmaCh18G006790	Wild cucumber (PI 183967)	cmacpiB419
CmaCh18G006790	Cucumber (Chinese Long) v2	cmacuB413
CmaCh18G006790	Melon (DHL92) v3.5.1	cmameB354
CmaCh18G006790	Watermelon (Charleston Gray)	cmawcgB337
CmaCh18G006790	Watermelon (97103) v1	cmawmB398
CmaCh18G006790	Cucurbita pepo (Zucchini)	cmacpeB455
CmaCh18G006790	Bottle gourd (USVL1VR-Ls)	cmalsiB383
CmaCh18G006790	Cucumber (Gy14) v2	cgybcmaB623
CmaCh18G006790	Melon (DHL92) v3.6.1	cmamedB411