CmoCh04G019280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G019280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Rubber elongation factor protein (REF)
Location	Cmo_Chr04 : 9856602 .. 9858376 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCACGTGTCCTTCTGGAAACATCTACTGGAATATGGAATCACGGCAAAATTACCTCTTCCCATCCCTGTCTGCTTTCTCCAACTCCATCAAATCCTTAGCCAAGAATAAGATTCTCCTAAAACCATGCGATCATGGGCCCCACCGTTGGCGTATCTTAACCGTTGGATGAGCGGCCGACGAAAAATCCAACGAACAGAACGCGGCAAATTACGCTAACGAATGGTCATTGTATAAAATATAAATTCAAGCCGTTTTGATCATCGTTTTCTTTCAAGCGAAGGGAATAGTGGAGTAGCAAATTTCCGGAGCACATCACCGAAAGGCTGTTGAATCTCTTTGTGTGTGTGGATAAAGTTTTGTTATCATTTGTTTTTCTTTTTGTCTACGCAAGCAATTGCGGTCTTGATCGATCGGAATTAATAGATGGAGAACGAAAGGCAGAATCTAGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTATGTGTTACGAATCTCTATGATTACGCGAAGCAGAACTCCGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACAGTTGTAGCTCCTGCCTACGAGAAGCTCCGAATCGCACCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTATTCTTTGTTTTCTTTAATCGTTTGGACTCTTTAGATGACTTTCTTGGATCAGCATGTTTATTAATTTTTAGATTGTTTTTTGCGATTCAATGGATTGTCGGACGAAGATCGTTCTGGCTGATGATTGATTAGATGGAGATGTTTTGCTTTCCAGATTTTTATTCACTAAATCCAACTCTGAAATCTTGATTACTACGATGAATTTAGTTCTCCAACCTTCTATATGATGAAAATCATCGGGAAATTATTTTCCCTTGAAATAAAATTAATTAAACTCAAGTGTCTCCGATTGGCCGACTGAAGTACAATTCATATATGATCATACCAGGTAGATACGGTTGAAATTTGAGTTTCAACGATCTATACAGGAAAAAATTGCGTTTAAATCTATTTCAGACTTGTGTAGAATGAATGAGTTTATGGCCGAGTGTGCGTTTTTTTCCCGGTCCTTTCCACGGAAGAAGATCAGTGAAGATGAAATGGTGAATTCGTTCGTAATTTATTCGAGGGACTATTAGAGTCTACAGTAAACATTATGTGTTCTCTGGGATAATGATTCCTGGCTGAAATGAACATTTCTAATCATGGTGGGAAGTTTGTTGCAGGTTGACAAAGCGACACATGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACGCAGCATTGTATCCAAAAAGCTGCTCGAACTGGGCAAGAATTTGTGAATGAGTTTCAAACGAGCGGACCACGCGCAGCGTTCTACTATGCAGCGAACGGGTACAAGCAGTTGGTTCTAACCCAAGGAGTGAAGGTTTGGGCATGTCTCAACCGGCTCCCATCGTTCCACAAGTTCGCAGACATGGCAGTGCCAACTGCGGCTCAGTGGTTGGAGAGGTACAACTGCAAGGTGAAAGATATGAGGCAGAAGGGCTACCACGTCTTTGACTATTGTCCTGAAGTTCCTCTGAGTGAGATAGCTGAGGCATTTAAGCAGGGCAAGGCCAAGAAGAAAGAAGCACCTCCAACTACTCCTGAACAAGCTCCACCGAAGAACAAACCGGGTTCAGATTCCGATTCTGAATCCGAATCCGAATCCGAGTTGGTTTCGGTTCCAAACTAG

mRNA sequence

CGCCACGTGTCCTTCTGGAAACATCTACTGGAATATGGAATCACGGCAAAATTACCTCTTCCCATCCCTGTCTGCTTTCTCCAACTCCATCAAATCCTTAGCCAAGAATAAGATTCTCCTAAAACCATGCGATCATGGGCCCCACCGTTGGCGTATCTTAACCGTTGGATGAGCGGCCGACGAAAAATCCAACGAACAGAACGCGGCAAATTACGCTAACGAATGGTCATTGTATAAAATATAAATTCAAGCCGTTTTGATCATCGTTTTCTTTCAAGCGAAGGGAATAGTGGAGTAGCAAATTTCCGGAGCACATCACCGAAAGGCTGTTGAATCTCTTTGTGTGTGTGGATAAAGTTTTGTTATCATTTGTTTTTCTTTTTGTCTACGCAAGCAATTGCGGTCTTGATCGATCGGAATTAATAGATGGAGAACGAAAGGCAGAATCTAGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTATGTGTTACGAATCTCTATGATTACGCGAAGCAGAACTCCGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACAGTTGTAGCTCCTGCCTACGAGAAGCTCCGAATCGCACCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCGACACATGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACGCAGCATTGTATCCAAAAAGCTGCTCGAACTGGGCAAGAATTTGTGAATGAGTTTCAAACGAGCGGACCACGCGCAGCGTTCTACTATGCAGCGAACGGGTACAAGCAGTTGGTTCTAACCCAAGGAGTGAAGGTTTGGGCATGTCTCAACCGGCTCCCATCGTTCCACAAGTTCGCAGACATGGCAGTGCCAACTGCGGCTCAGTGGTTGGAGAGGTACAACTGCAAGGTGAAAGATATGAGGCAGAAGGGCTACCACGTCTTTGACTATTGTCCTGAAGTTCCTCTGAGTGAGATAGCTGAGGCATTTAAGCAGGGCAAGGCCAAGAAGAAAGAAGCACCTCCAACTACTCCTGAACAAGCTCCACCGAAGAACAAACCGGGTTCAGATTCCGATTCTGAATCCGAATCCGAATCCGAGTTGGTTTCGGTTCCAAACTAG

Coding sequence (CDS)

ATGGAGAACGAAAGGCAGAATCTAGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTATGTGTTACGAATCTCTATGATTACGCGAAGCAGAACTCCGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACAGTTGTAGCTCCTGCCTACGAGAAGCTCCGAATCGCACCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCGACACATGAGTTTGATAAGCGTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACGCAGCATTGTATCCAAAAAGCTGCTCGAACTGGGCAAGAATTTGTGAATGAGTTTCAAACGAGCGGACCACGCGCAGCGTTCTACTATGCAGCGAACGGGTACAAGCAGTTGGTTCTAACCCAAGGAGTGAAGGTTTGGGCATGTCTCAACCGGCTCCCATCGTTCCACAAGTTCGCAGACATGGCAGTGCCAACTGCGGCTCAGTGGTTGGAGAGGTACAACTGCAAGGTGAAAGATATGAGGCAGAAGGGCTACCACGTCTTTGACTATTGTCCTGAAGTTCCTCTGAGTGAGATAGCTGAGGCATTTAAGCAGGGCAAGGCCAAGAAGAAAGAAGCACCTCCAACTACTCCTGAACAAGCTCCACCGAAGAACAAACCGGGTTCAGATTCCGATTCTGAATCCGAATCCGAATCCGAGTTGGTTTCGGTTCCAAACTAG

Homology

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BLAST of CmoCh04G019280 vs. Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.6e-52
Identity = 113/240 (47.08%), Postives = 150/240 (62.50%), Query Frame = 1


Query: 1   MENERQN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVA 60
           ME E++N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVV 
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNE 120
           P Y+K +  PD +LVFLD KV + +++FD+ APP+AK+ V      I KA    Q FV E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTSGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKV 180
            +T GP+AAF YAA  YK  V+T  VKVWA LN+    H   D A+P AA +  RYN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KDMRQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKN-KPGSDSDSESE 237
            DM   GY +  Y P VP+ +I +A+++  A++K+   T  ++    +   G  S S+SE
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

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BLAST of CmoCh04G019280 vs. Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 6.1e-33
Identity = 80/216 (37.04%), Postives = 113/216 (52.31%), Query Frame = 1


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAPDD 69
           LK+L FV++A I  IVC ++LY+YAK+NSGPL+  V++VE  V TV+ P YEK    P +
Sbjct: 20  LKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFE 79

Query: 70  VLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG------- 129
           +L+F+D KV+ + +E ++  P L K+A        QKA        +E Q  G       
Sbjct: 80  LLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKN 139

Query: 130 ----------PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLER 189
                     P A      + Y+ +     V  W  LNRLP F + A + VPTAA W E+
Sbjct: 140 ITKNVYSKCEPTAK--ELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEK 199

Query: 190 YNCKVKDMRQKGYHVFDYCPEVPLSEIAEAFKQGKA 209
           YN  V    ++GY V  Y P +P   IA+ F+ G A
Sbjct: 200 YNQSVSYTAERGYTVALYLPLIPTERIAKVFQDGSA 233

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BLAST of CmoCh04G019280 vs. Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.1e-29
Identity = 80/217 (36.87%), Postives = 109/217 (50.23%), Query Frame = 1


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAPDD 69
           LK+L FV+ A ++ ++    +Y  AK  SGPL+  VESVE AV TVV P YEK    P +
Sbjct: 22  LKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVE 81

Query: 70  VLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG------- 129
           VL ++D+KVD +  E D+R PP+ KQ         Q A    +   +E + +G       
Sbjct: 82  VLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASG 141

Query: 130 ----------PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLER 189
                     P A   YA   Y+       V  W  LN+LP F + A +AVPTAA   E+
Sbjct: 142 MAKSVYSKYEPAAKELYA--NYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEK 201

Query: 190 YNCKVKDMRQKGYHVFDYCPEVPLSEIAEAFKQGKAK 210
           YN  V    +KGY V  Y P VP   I++ F + KA+
Sbjct: 202 YNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAE 236

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BLAST of CmoCh04G019280 vs. Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.9e-28
Identity = 68/207 (32.85%), Postives = 107/207 (51.69%), Query Frame = 1


Query: 8   LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAP 67
           ++LKHL F+++A +    C + LY+ AK N+GPL+  VE++E  V TV+AP YEK    P
Sbjct: 39  MKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVP 98

Query: 68  DDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTG-----QEFVNEFQTSG 127
             +L+F+D KVD    + +   P L KQA         +  RTG     +      +   
Sbjct: 99  FKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKY 158

Query: 128 PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQ 187
             AA YYAA             +W  LN+LP F + A + +PTA  W E+YN  V+ +  
Sbjct: 159 EPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGD 218

Query: 188 KGYHVFDYCPEVPLSEIAEAFKQGKAK 210
           + Y   +Y P +P+ +I++  +Q + +
Sbjct: 219 RDYFGAEYLPMIPIEKISDILEQDQCR 233

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BLAST of CmoCh04G019280 vs. Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 115.9 bits (289), Expect = 6.1e-25
Identity = 74/228 (32.46%), Postives = 105/228 (46.05%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           ME   +   L++L FV+ A  Q +V     Y YAKQ +GPLR  V+ VE  V  VV P Y
Sbjct: 26  MEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVY 85

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFV----- 120
           ++    P D+L FLD KV ++  E D+R PP+ K+A  + +    +  + G         
Sbjct: 86  DRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLA 145

Query: 121 -NEFQTSGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYN 180
            +    + PRA   Y    Y+ +   +  + WA LNRLP         +P AA    RYN
Sbjct: 146 KSAIARAEPRARDLYTR--YEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYN 205

Query: 181 CKVKDMRQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAP 223
             V D  ++G  V  Y P VP   ++  F    A    +P   PE  P
Sbjct: 206 TAVADGAKRGSAVATYLPLVPTERLSRVFGYPLADAATSP--APEMQP 249

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BLAST of CmoCh04G019280 vs. TrEMBL
Match: A0A0A0KS04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589910 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.4e-108
Identity = 203/240 (84.58%), Postives = 219/240 (91.25%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           ME+E QNLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTGQ+ VNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180
            GPRAAF+YAAN YKQLVL QGVK+WA LNRLPSFHKFADMAVPT AQWLE YN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAKKK-EAPPTTPEQAPPKNKPGSDSDSESESES 240
           RQKGYHVFDYCPEVP+SEIA+AFKQ ++KKK E  P TPEQAP K++ GSDSDS+S+S S
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

[Close]

BLAST of CmoCh04G019280 vs. TrEMBL
Match: A9P8H1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13940g PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.9e-65
Identity = 132/230 (57.39%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 3   NERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEK 62
           ++R++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++ I+KA+   +   NEFQ  G
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQ 182
           PRAA +Y +   K L LT+ VKVW  L++ PS HK A++AVPTAA W E+YN  VK+M Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKNKPGSDSD 233
           KGY VF Y P VP+ EI+ AFKQG+A+KKE      +    K+   SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEKKE------DATAHKDSDSSDSD 229

[Close]

BLAST of CmoCh04G019280 vs. TrEMBL
Match: M5XHT7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010801mg PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 8.8e-63
Identity = 121/204 (59.31%), Postives = 145/204 (71.08%), Query Frame = 1


Query: 9   ELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAPD 68
           ELKHLG  R+  I T+VC++NLYDYAKQNSGPLRS V +VE AV  VV P Y K +  PD
Sbjct: 17  ELKHLGIFRVVAIHTLVCLSNLYDYAKQNSGPLRSTVGTVEGAVTAVVGPVYRKFKGVPD 76

Query: 69  DVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSGPRAAFY 128
           DVL FLD KVD+A  +FDK APPLAKQ    T   IQK    GQ+FV E QT GPR+A +
Sbjct: 77  DVLAFLDTKVDQAAGKFDKHAPPLAKQVASQTHVLIQKTLEKGQKFVKEAQTGGPRSAIH 136

Query: 129 YAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQKGYHVF 188
           YAA  YKQ VL Q VK+W  LN+ PS HK A+ A PTAAQW ++YN  VKD  +KGY +F
Sbjct: 137 YAATEYKQFVLNQSVKLWVGLNQYPSIHKVAEKAAPTAAQWSDKYNRTVKDFTRKGYAIF 196

Query: 189 DYCPEVPLSEIAEAFKQGKAKKKE 213
            Y P VP+ EI++A ++G+AKKKE
Sbjct: 197 GYLPLVPIDEISKAVEKGEAKKKE 220

[Close]

BLAST of CmoCh04G019280 vs. TrEMBL
Match: A0A067H2V6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026954mg PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.7e-61
Identity = 129/236 (54.66%), Postives = 164/236 (69.49%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           ME ER+  EL+HLGF+RIA IQ +VCV++LYDYAK+NSGPLRS V +VESAV  VV P Y
Sbjct: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120
           +K +  PDD+LVFLD+KVD+A+ +FD+ APPLAK+        I+ A++  Q  V+E QT
Sbjct: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120

Query: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180
            GPRAA +YAA   K L++T  VK W  LN    FH  ADMAVPTAAQW ++YN  V +M
Sbjct: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180

Query: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKNKPGSDSDSESE 237
            +KGY VF Y P VP+ +IA+AFKQ +A KKE     PE+   K K   DS S+S+
Sbjct: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKE---DAPEKEDAKEK---DSSSDSD 230

[Close]

BLAST of CmoCh04G019280 vs. TrEMBL
Match: B9RME8_RICCO (Small rubber particle protein, putative OS=Ricinus communis GN=RCOM_1080400 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.7e-61
Identity = 127/231 (54.98%), Postives = 156/231 (67.53%), Query Frame = 1


Query: 2   ENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYE 61
           E +  + ELKHLGFVR+  +QT+VCV+NLYDYAKQNSGPLRS V +VE+AV TVV P Y+
Sbjct: 4   EKKMNSKELKHLGFVRMVAVQTLVCVSNLYDYAKQNSGPLRSTVGTVETAVTTVVGPVYQ 63

Query: 62  KLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTS 121
           K +  PD +LVF+D KVD+ T +FDK APP+AKQ     Q  +Q A +  QE VNE +  
Sbjct: 64  KFKDLPDHLLVFVDNKVDEGTQKFDKHAPPVAKQVASQAQTLMQVALQKVQELVNEARVG 123

Query: 122 GPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMR 181
           G RAA ++AA   K L LTQ VKVW  LN+ P+ H  ADMAVPTAA W E+YN  +KDM 
Sbjct: 124 GARAAVHFAAKESKHLALTQSVKVWIKLNQFPAVHTVADMAVPTAAHWSEKYNHVIKDMT 183

Query: 182 QKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKNKPGSDSD 233
           QKG+ +F Y P VP+ EIA+AFKQGK K  E       Q+       SDSD
Sbjct: 184 QKGHTLFGYLPLVPVDEIAKAFKQGKTKAGEKANVAAHQS-----DSSDSD 229

[Close]

BLAST of CmoCh04G019280 vs. TAIR10
Match: AT1G67360.2 (AT1G67360.2 Rubber elongation factor protein (REF))

HSP 1 Score: 206.8 bits (525), Expect = 1.5e-53
Identity = 113/240 (47.08%), Postives = 150/240 (62.50%), Query Frame = 1


Query: 1   MENERQN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVA 60
           ME E++N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVV 
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNE 120
           P Y+K +  PD +LVFLD KV + +++FD+ APP+AK+ V      I KA    Q FV E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTSGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKV 180
            +T GP+AAF YAA  YK  V+T  VKVWA LN+    H   D A+P AA +  RYN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KDMRQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKN-KPGSDSDSESE 237
            DM   GY +  Y P VP+ +I +A+++  A++K+   T  ++    +   G  S S+SE
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

[Close]

BLAST of CmoCh04G019280 vs. TAIR10
Match: AT3G05500.1 (AT3G05500.1 Rubber elongation factor protein (REF))

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-30
Identity = 80/217 (36.87%), Postives = 109/217 (50.23%), Query Frame = 1


Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAPDD 69
           LK+L FV+ A ++ ++    +Y  AK  SGPL+  VESVE AV TVV P YEK    P +
Sbjct: 22  LKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVE 81

Query: 70  VLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG------- 129
           VL ++D+KVD +  E D+R PP+ KQ         Q A    +   +E + +G       
Sbjct: 82  VLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASG 141

Query: 130 ----------PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLER 189
                     P A   YA   Y+       V  W  LN+LP F + A +AVPTAA   E+
Sbjct: 142 MAKSVYSKYEPAAKELYA--NYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEK 201

Query: 190 YNCKVKDMRQKGYHVFDYCPEVPLSEIAEAFKQGKAK 210
           YN  V    +KGY V  Y P VP   I++ F + KA+
Sbjct: 202 YNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAE 236

[Close]

BLAST of CmoCh04G019280 vs. TAIR10
Match: AT2G47780.1 (AT2G47780.1 Rubber elongation factor protein (REF))

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-29
Identity = 68/207 (32.85%), Postives = 107/207 (51.69%), Query Frame = 1


Query: 8   LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEKLRIAP 67
           ++LKHL F+++A +    C + LY+ AK N+GPL+  VE++E  V TV+AP YEK    P
Sbjct: 39  MKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVP 98

Query: 68  DDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTG-----QEFVNEFQTSG 127
             +L+F+D KVD    + +   P L KQA         +  RTG     +      +   
Sbjct: 99  FKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSVRDKY 158

Query: 128 PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQ 187
             AA YYAA             +W  LN+LP F + A + +PTA  W E+YN  V+ +  
Sbjct: 159 EPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGD 218

Query: 188 KGYHVFDYCPEVPLSEIAEAFKQGKAK 210
           + Y   +Y P +P+ +I++  +Q + +
Sbjct: 219 RDYFGAEYLPMIPIEKISDILEQDQCR 233

[Close]

BLAST of CmoCh04G019280 vs. NCBI nr
Match: gi|659090481|ref|XP_008446040.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo])

HSP 1 Score: 406.8 bits (1044), Expect = 2.8e-110
Identity = 210/247 (85.02%), Postives = 226/247 (91.50%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           ME+E QNLELKHLGFVRIA+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MESESQNLELKHLGFVRIALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTG+E VNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGKELVNEFQT 120

Query: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180
            GPRAAF+YAAN YKQLVL QGVK+WA LNRLPSFHKFADMAVPTAAQWLE YN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKMWAGLNRLPSFHKFADMAVPTAAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAK-KKEAPPTTPEQAPPKNKPGSDSDSESESES 240
           RQKGYHVFDYCPEVP+S+IA+AFKQG+AK K+E  PTTPEQAP KN+ GSDSDS+S+S S
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETSPTTPEQAPSKNEAGSDSDSDSDSAS 240

Query: 241 ELVSVPN 247
             V+ PN
Sbjct: 241 --VAGPN 245

[Close]

BLAST of CmoCh04G019280 vs. NCBI nr
Match: gi|449435073|ref|XP_004135320.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 2.0e-108
Identity = 203/240 (84.58%), Postives = 219/240 (91.25%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           ME+E QNLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVV PAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTGQ+ VNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180
            GPRAAF+YAAN YKQLVL QGVK+WA LNRLPSFHKFADMAVPT AQWLE YN KVK++
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAKKK-EAPPTTPEQAPPKNKPGSDSDSESESES 240
           RQKGYHVFDYCPEVP+SEIA+AFKQ ++KKK E  P TPEQAP K++ GSDSDS+S+S S
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

[Close]

BLAST of CmoCh04G019280 vs. NCBI nr
Match: gi|224053483|ref|XP_002297837.1| (hypothetical protein POPTR_0001s13940g [Populus trichocarpa])

HSP 1 Score: 257.3 bits (656), Expect = 2.7e-65
Identity = 132/230 (57.39%), Postives = 166/230 (72.17%), Query Frame = 1


Query: 3   NERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEK 62
           ++R++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++ I+KA+   +   NEFQ  G
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQ 182
           PRAA +Y +   K L LT+ VKVW  L++ PS HK A++AVPTAA W E+YN  VK+M Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKNKPGSDSD 233
           KGY VF Y P VP+ EI+ AFKQG+A+KKE      +    K+   SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEKKE------DATAHKDSDSSDSD 229

[Close]

BLAST of CmoCh04G019280 vs. NCBI nr
Match: gi|743916328|ref|XP_011002135.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Populus euphratica])

HSP 1 Score: 256.1 bits (653), Expect = 6.1e-65
Identity = 131/230 (56.96%), Postives = 167/230 (72.61%), Query Frame = 1


Query: 3   NERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAYEK 62
           ++R++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQTSG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++ I+KA+   +   NEFQ  G
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDMRQ 182
           PRAA +Y +   K L LT+ VK+W  L++ PS HK A++AVPTAAQW E+YN  VK+M Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKLWVKLDQYPSVHKVAEVAVPTAAQWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPLSEIAEAFKQGKAKKKEAPPTTPEQAPPKNKPGSDSD 233
           KGY VF Y P VP+ EI+ AFKQG+A++KE      +    K+   SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEEKE------DATAHKDPDSSDSD 229

[Close]

BLAST of CmoCh04G019280 vs. NCBI nr
Match: gi|645230925|ref|XP_008222157.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Prunus mume])

HSP 1 Score: 249.2 bits (635), Expect = 7.4e-63
Identity = 123/212 (58.02%), Postives = 149/212 (70.28%), Query Frame = 1


Query: 1   MENERQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVAPAY 60
           +EN ++  ELKHLG  R+A I T+VCV+NLYDYAKQNSGPLRS V +VE AV  VV P Y
Sbjct: 10  IENNKEK-ELKHLGIFRVAAIHTLVCVSNLYDYAKQNSGPLRSTVGTVEGAVTAVVGPVY 69

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHCIQKAARTGQEFVNEFQT 120
            K +  PDDVL FLD KVD+A  +FDK APPLAKQ        IQK    GQ+FV E QT
Sbjct: 70  RKFKGVPDDVLAFLDTKVDQAAGKFDKHAPPLAKQVASQAHVLIQKTVEKGQKFVKEAQT 129

Query: 121 SGPRAAFYYAANGYKQLVLTQGVKVWACLNRLPSFHKFADMAVPTAAQWLERYNCKVKDM 180
            GPR+A +YAA  YKQ VL Q VK+W  LN+ PS HK A+ A PTAA W ++YN  VKD 
Sbjct: 130 GGPRSAIHYAATEYKQFVLNQSVKLWVGLNQYPSIHKVAEKAAPTAAHWSDKYNHTVKDF 189

Query: 181 RQKGYHVFDYCPEVPLSEIAEAFKQGKAKKKE 213
            +KGY +F Y P VP+ EI++A ++G+AKKKE
Sbjct: 190 TRKGYAIFGYLPLVPIDEISKAVEKGEAKKKE 220

The following BLAST results are available for this feature:

BLAST of CmoCh04G019280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1736_ARATH	2.6e-52	47.08	REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1	[more]
SRP_VITRI	6.1e-33	37.04	Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1	[more]
Y3550_ARATH	3.1e-29	36.87	REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1	[more]
Y2778_ARATH	5.9e-28	32.85	REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1	[more]
Y5513_ORYSJ	6.1e-25	32.46	REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic...	[more]

BLAST of CmoCh04G019280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS04_CUCSA	1.4e-108	84.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589910 PE=4 SV=1	[more]
A9P8H1_POPTR	1.9e-65	57.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13940g PE=2 SV=1	[more]
M5XHT7_PRUPE	8.8e-63	59.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010801mg PE=4 SV=1	[more]
A0A067H2V6_CITSI	3.7e-61	54.66	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026954mg PE=4 SV=1	[more]
B9RME8_RICCO	3.7e-61	54.98	Small rubber particle protein, putative OS=Ricinus communis GN=RCOM_1080400 PE=4...	[more]

BLAST of CmoCh04G019280 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G67360.2	1.5e-53	47.08	Rubber elongation factor protein (REF)	[more]
AT3G05500.1	1.8e-30	36.87	Rubber elongation factor protein (REF)	[more]
AT2G47780.1	3.3e-29	32.85	Rubber elongation factor protein (REF)	[more]

BLAST of CmoCh04G019280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090481\|ref\|XP_008446040.1\|	2.8e-110	85.02	PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo]	[more]
gi\|449435073\|ref\|XP_004135320.1\|	2.0e-108	84.58	PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis sativus]	[more]
gi\|224053483\|ref\|XP_002297837.1\|	2.7e-65	57.39	hypothetical protein POPTR_0001s13940g [Populus trichocarpa]	[more]
gi\|743916328\|ref\|XP_011002135.1\|	6.1e-65	56.96	PREDICTED: REF/SRPP-like protein At1g67360 [Populus euphratica]	[more]
gi\|645230925\|ref\|XP_008222157.1\|	7.4e-63	58.02	PREDICTED: REF/SRPP-like protein At1g67360 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008802	REF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0080186	developmental vegetative growth
biological_process	GO:0034389	lipid particle organization
biological_process	GO:0009555	pollen development
biological_process	GO:0045927	positive regulation of growth
biological_process	GO:1902584	positive regulation of response to water deprivation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005811	lipid particle
cellular_component	GO:0005773	vacuole
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019280.1	CmoCh04G019280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008802	Rubber elongation factor	PFAM	PF05755	REF	coord: 5..205 score: 1.1
None	No IPR available	PANTHER	PTHR33732	FAMILY NOT NAMED	coord: 1..224 score: 1.0E
None	No IPR available	PANTHER	PTHR33732:SF2	SUBFAMILY NOT NAMED	coord: 1..224 score: 1.0E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G019280	Cucsa.075670	Cucumber (Gy14) v1	cgycmoB0123
CmoCh04G019280	CmaCh18G006980	Cucurbita maxima (Rimu)	cmacmoB422
CmoCh04G019280	CmaCh04G018320	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G019280	Cla022966	Watermelon (97103) v1	cmowmB732
CmoCh04G019280	Csa5G589910	Cucumber (Chinese Long) v2	cmocuB739
CmoCh04G019280	MELO3C011868	Melon (DHL92) v3.5.1	cmomeB632
CmoCh04G019280	ClCG11G013690	Watermelon (Charleston Gray)	cmowcgB631
CmoCh04G019280	CSPI05G21440	Wild cucumber (PI 183967)	cmocpiB748
CmoCh04G019280	Lsi04G006800	Bottle gourd (USVL1VR-Ls)	cmolsiB661
CmoCh04G019280	Cp4.1LG09g06040	Cucurbita pepo (Zucchini)	cmocpeB646
CmoCh04G019280	Cp4.1LG01g16130	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G019280	MELO3C011868.2	Melon (DHL92) v3.6.1	cmomedB721
CmoCh04G019280	CsaV3_5G030300	Cucumber (Chinese Long) v3	cmocucB0875
CmoCh04G019280	Cla97C11G219610	Watermelon (97103) v2	cmowmbB707
CmoCh04G019280	Bhi07G001527	Wax gourd	cmowgoB0890
CmoCh04G019280	CsGy5G020960	Cucumber (Gy14) v2	cgybcmoB653
CmoCh04G019280	Carg21230	Silver-seed gourd	carcmoB0945
CmoCh04G019280	Carg19259	Silver-seed gourd	carcmoB0409

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G019280	CmoCh18G006840	Cucurbita moschata (Rifu)	cmocmoB341

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G019280	Watermelon (97103) v1	cmowmB666
CmoCh04G019280	Cucurbita pepo (Zucchini)	cmocpeB710
CmoCh04G019280	Bottle gourd (USVL1VR-Ls)	cmolsiB698
CmoCh04G019280	Cucumber (Gy14) v2	cgybcmoB232
CmoCh04G019280	Melon (DHL92) v3.6.1	cmomedB761
CmoCh04G019280	Silver-seed gourd	carcmoB0858
CmoCh04G019280	Cucumber (Chinese Long) v3	cmocucB0808
CmoCh04G019280	Watermelon (97103) v2	cmowmbB763
CmoCh04G019280	Wax gourd	cmowgoB0868
CmoCh04G019280	Cucurbita moschata (Rifu)	cmocmoB147
CmoCh04G019280	Cucumber (Gy14) v1	cgycmoB1092
CmoCh04G019280	Cucurbita maxima (Rimu)	cmacmoB189
CmoCh04G019280	Wild cucumber (PI 183967)	cmocpiB693
CmoCh04G019280	Cucumber (Chinese Long) v2	cmocuB682
CmoCh04G019280	Melon (DHL92) v3.5.1	cmomeB673
CmoCh04G019280	Watermelon (Charleston Gray)	cmowcgB683