Cla022966 (gene) Watermelon (97103) v1

Overview
NameCla022966
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRubber elongation factor family protein (AHRD V1 **-- D7KV24_ARALL); contains Interpro domain(s) IPR008802 Rubber elongation factor
LocationChr11 : 15999261 .. 16000558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTATTCTTTATTTTCTGTAATTCTTTGGACTTACTTTATATCTTTGGATGACTTGCTTGGATCGATTTAGTAAATTAGTTTTTAGTTTGTTTTCATGATTCATTCGATTGTACCGGCGAATATCGATCTGGCTGTGTTTGATTAGATGGAGATGTTTTGCATTCCAAATTGTTTTTTTCACCAATAAATCAAACTCTGTATGATGAGATTTATCGAGATATTGTTTTCTCTTGAAATGAAAGTTTATAATCAAGTGTCTCCGACTGGCCGACTGAAGTACAATTCATGTATGTCCTTACCTGGTAGAAATTTGAGTTTCAACAATCAATTTCAAGAAAAAGATGTGATGAAATCTATTTCAGATTAGTGTAGAATAGTATGACTTTACGGGGAGACCTATGGGAGTTTCTTCGTAACAAGTTAGAGAAGACGAAATGCCTGAGTTTCTTCGTAATTCATTCAAAAGGACAACAAGAGTCTACAGTACAAATTATGTGTTCTCTGGGACAATGATTTCTGGCTGAAATGAACATTGTTAATTGTGGTGTGGAATGAATTTGTTGCAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCAGATTCGGATTCGGTTGCTGGTCCTAATTAG

mRNA sequence

ATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCAGATTCGGATTCGGTTGCTGGTCCTAATTAG

Coding sequence (CDS)

ATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCAGATTCGGATTCGGTTGCTGGTCCTAATTAG

Protein sequence

MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSDSVAGPN
Homology
[Close]
BLAST of Cla022966 vs. Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55
Identity = 113/240 (47.08%), Postives = 147/240 (61.25%), Query Frame = 1 

Query: 1   MESESQN---LELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVT 60
           ME+E +N   + LKHL FVRIA I  +  V+NLY+YAKQNSGPL+SAVE VE AV TVVT
Sbjct: 1   METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVT 60

Query: 61  PAYEKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNE 120
           P Y+K +  PD +LVFLD KV + +++FD+ APP+AK+ V     LI KA    Q  V E
Sbjct: 61  PVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKE 120

Query: 121 FQTGGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKV 180
            +TGGP+AAF+YAA EYK  V+   VK+WA LN+    H   D A+P AA +   YN  V
Sbjct: 121 ARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLV 180

Query: 181 KEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSD 238
            +M   GY +  Y P VPV  I KA+++ +A+ K+       +   +    G  S SDS+
Sbjct: 181 TDMTNMGYSLVGYLPLVPVDDIVKAYEKEDARRKKGGDTAGKKGETTDAADGDKSSSDSE 240

[Close]
BLAST of Cla022966 vs. Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.4e-35
Identity = 81/220 (36.82%), Postives = 115/220 (52.27%), Query Frame = 1 

Query: 10  LKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDD 69
           LK+L FV++A I  IVC ++LY+YAK+NSGPL+  V++VE  V TV+ P YEK    P +
Sbjct: 20  LKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFE 79

Query: 70  VLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGGP------ 129
           +L+F+D KV+ + +E ++  P L K+A      + QKA      + +E Q  G       
Sbjct: 80  LLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKN 139

Query: 130 ---------RAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYN 189
                            ++Y+ +     V  W  LNRLP F + A + VPTAA W E YN
Sbjct: 140 ITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYN 199

Query: 190 RKVKEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEET 215
           + V    ++GY V  Y P +P  +IAK F+ G A    ET
Sbjct: 200 QSVSYTAERGYTVALYLPLIPTERIAKVFQDGSALPTVET 239

[Close]
BLAST of Cla022966 vs. Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30
Identity = 86/231 (37.23%), Postives = 114/231 (49.35%), Query Frame = 1 

Query: 3   SESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEK 62
           ++ +   LK+L FV+ A ++ ++    +Y  AK  SGPL+  VESVE AV TVV P YEK
Sbjct: 15  TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEK 74

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGG 122
               P +VL ++D+KVD +  E D+R PP+ KQ         Q A    + L +E +  G
Sbjct: 75  YHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAG 134

Query: 123 -----------------PRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPT 182
                            P A   YA   Y+       V  W  LN+LP F + A +AVPT
Sbjct: 135 VVETASGMAKSVYSKYEPAAKELYA--NYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPT 194

Query: 183 AAQWLESYNRKVKEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPP 217
           AA   E YN  V +  +KGY V  Y P VP  +I+K F    A+EK ET P
Sbjct: 195 AAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIF----AEEKAETEP 239

[Close]
BLAST of Cla022966 vs. Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-28
Identity = 66/206 (32.04%), Postives = 102/206 (49.51%), Query Frame = 1 

Query: 4   ESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKL 63
           +   ++LKHL F+++A +    C + LY+ AK N+GPL+  VE++E  V TV+ P YEK 
Sbjct: 35  DDDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKF 94

Query: 64  RIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGGP 123
              P  +L+F+D KVD    + +   P L KQA      +  +  RTG     +      
Sbjct: 95  HDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQALTVATEVQRTGVVDTTKSIARSV 154

Query: 124 RAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQK 183
           R  +  AA  Y          +W  LN+LP F + A + +PTA  W E YN  V+ +  +
Sbjct: 155 RDKYEPAAEYY-------AATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDR 214

Query: 184 GYHVFDYCPEVPVSKIAKAFKQGEAK 210
            Y   +Y P +P+ KI+   +Q + +
Sbjct: 215 DYFGAEYLPMIPIEKISDILEQDQCR 233

[Close]
BLAST of Cla022966 vs. Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 3.9e-24
Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ ++   L++L FV+ A  Q +V     Y YAKQ +GPLR  V+ VE  V  VV P Y
Sbjct: 26  MEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVY 85

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           ++    P D+L FLD KV ++  E D+R PP+ K+A  + +     AA   Q  +    T
Sbjct: 86  DRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLAR---SAAAEVRQAGLVGTAT 145

Query: 121 GGPRAAFHYAA-------NEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESY 180
           G  ++A   A          Y+ +   +  + WA LNRLP         +P AA     Y
Sbjct: 146 GLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARY 205

Query: 181 NRKVKEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAP 224
           N  V +  ++G  V  Y P VP  ++++ F  G       T P  PE  P
Sbjct: 206 NTAVADGAKRGSAVATYLPLVPTERLSRVF--GYPLADAATSP-APEMQP 249

[Close]
BLAST of Cla022966 vs. TrEMBL
Match: A0A0A0KS04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589910 PE=4 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 6.8e-124
Identity = 225/246 (91.46%), Postives = 232/246 (94.31%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MESESQNLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTGQ+LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPT AQWLESYN KVKE+
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSDS-- 240
           RQKGYHVFDYCPEVPVS+IAKAFKQ E+K+KEET P TPEQAPSKHE GS SDSDSDS  
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

Query: 241 -VAGPN 244
             AGPN
Sbjct: 241 VAAGPN 246

[Close]
BLAST of Cla022966 vs. TrEMBL
Match: A9P8H1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13940g PE=2 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69
Identity = 136/233 (58.37%), Postives = 168/233 (72.10%), Query Frame = 1 

Query: 3   SESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEK 62
           S+ ++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++LI+KA+   + L NEFQ GG
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQ 182
           PRAA HY + E K L L + VK+W  L++ PS HK A++AVPTAA W E YN  VKEM Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
           KGY VF Y P VPV +I+ AFKQGEA++KE+          + H+    SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEKKEDA---------TAHKDSDSSDSD 229

[Close]
BLAST of Cla022966 vs. TrEMBL
Match: M5XHT7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010801mg PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 9.9e-67
Identity = 132/227 (58.15%), Postives = 156/227 (68.72%), Query Frame = 1 

Query: 9   ELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPD 68
           ELKHLG  R+  I T+VC++NLYDYAKQNSGPLRS V +VE AV  VV P Y K +  PD
Sbjct: 17  ELKHLGIFRVVAIHTLVCLSNLYDYAKQNSGPLRSTVGTVEGAVTAVVGPVYRKFKGVPD 76

Query: 69  DVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGGPRAAFH 128
           DVL FLD KVD+A  +FDK APPLAKQ    T  LIQK    GQ+ V E QTGGPR+A H
Sbjct: 77  DVLAFLDTKVDQAAGKFDKHAPPLAKQVASQTHVLIQKTLEKGQKFVKEAQTGGPRSAIH 136

Query: 129 YAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQKGYHVF 188
           YAA EYKQ VL+Q VK+W GLN+ PS HK A+ A PTAAQW + YNR VK+  +KGY +F
Sbjct: 137 YAATEYKQFVLNQSVKLWVGLNQYPSIHKVAEKAAPTAAQWSDKYNRTVKDFTRKGYAIF 196

Query: 189 DYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
            Y P VP+ +I+KA ++GEAK+KE          P  H   S SDSD
Sbjct: 197 GYLPLVPIDEISKAVEKGEAKKKENA------AVPVLHSSDS-SDSD 236

[Close]
BLAST of Cla022966 vs. TrEMBL
Match: A0A067H2V6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026954mg PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.9e-66
Identity = 135/235 (57.45%), Postives = 167/235 (71.06%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+E +  EL+HLGF+RIA IQ +VCV++LYDYAK+NSGPLRS V +VESAV  VV P Y
Sbjct: 1   METERKKQELRHLGFMRIAAIQALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           +K +  PDD+LVFLD+KVD+A+ +FD+ APPLAK+       LI+ A++  Q LV+E QT
Sbjct: 61  QKFKGVPDDLLVFLDKKVDEASRKFDEHAPPLAKRVASQVHSLIETASQKAQNLVSEAQT 120

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAA HYAA E K L++   VK W  LN    FH  ADMAVPTAAQW + YN  V EM
Sbjct: 121 GGPRAAVHYAAAESKHLLVTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
            +KGY VF Y P VP+  IAKAFKQ EA +KE+     PE+  +K E+ S SDSD
Sbjct: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKED----APEKEDAK-EKDSSSDSD 230

[Close]
BLAST of Cla022966 vs. TrEMBL
Match: V4TDB7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032648mg PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65
Identity = 135/235 (57.45%), Postives = 166/235 (70.64%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+E +  EL+HLGF+RIA I+ +VCV++LYDYAK+NSGPLRS V +VESAV  VV P Y
Sbjct: 1   METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           +K +  PDD+LVFLD+KVD A+ +FD+ APPLAK+       LI+ A++  Q+LV E QT
Sbjct: 61  QKFKGVPDDLLVFLDKKVDDASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQT 120

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAA HYAA E K L+L   VK W  LN    FH  ADMAVPTAAQW + YN  V EM
Sbjct: 121 GGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEM 180

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
            +KGY VF Y P VP+  IAKAFKQ EA +KE+     PE+  +K E+ S SDSD
Sbjct: 181 TKKGYTVFGYLPLVPIDDIAKAFKQSEAPKKED----APEKEDAK-EKDSSSDSD 230

[Close]
BLAST of Cla022966 vs. NCBI nr
Match: gi|659090481|ref|XP_008446040.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo])

HSP 1 Score: 459.9 bits (1182), Expect = 2.7e-126
Identity = 231/245 (94.29%), Postives = 236/245 (96.33%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MESESQNLELKHLGFVRIA+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRIALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTG+ELVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGKELVNEFQT 120

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAAFHYAANEYKQLVLDQGVK+WAGLNRLPSFHKFADMAVPTAAQWLESYN KVKE+
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKMWAGLNRLPSFHKFADMAVPTAAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSD--S 240
           RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEET PTTPEQAPSK+E GS SDSDSD  S
Sbjct: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETSPTTPEQAPSKNEAGSDSDSDSDSAS 240

Query: 241 VAGPN 244
           VAGPN
Sbjct: 241 VAGPN 245

[Close]
BLAST of Cla022966 vs. NCBI nr
Match: gi|449435073|ref|XP_004135320.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis sativus])

HSP 1 Score: 451.4 bits (1160), Expect = 9.7e-124
Identity = 225/246 (91.46%), Postives = 232/246 (94.31%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           MESESQNLELKHLGFVR+A+IQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY
Sbjct: 1   MESESQNLELKHLGFVRVALIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           EKLRIAPDDVLVFLD KVDKATHEFDKRAPPLAKQA QITQH IQKAARTGQ+LVNEFQT
Sbjct: 61  EKLRIAPDDVLVFLDGKVDKATHEFDKRAPPLAKQAAQITQHFIQKAARTGQQLVNEFQT 120

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPT AQWLESYN KVKE+
Sbjct: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTTAQWLESYNSKVKEL 180

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSDS-- 240
           RQKGYHVFDYCPEVPVS+IAKAFKQ E+K+KEET P TPEQAPSKHE GS SDSDSDS  
Sbjct: 181 RQKGYHVFDYCPEVPVSEIAKAFKQDESKKKEETSPNTPEQAPSKHEAGSDSDSDSDSAS 240

Query: 241 -VAGPN 244
             AGPN
Sbjct: 241 VAAGPN 246

[Close]
BLAST of Cla022966 vs. NCBI nr
Match: gi|743916328|ref|XP_011002135.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Populus euphratica])

HSP 1 Score: 273.1 bits (697), Expect = 4.7e-70
Identity = 138/233 (59.23%), Postives = 169/233 (72.53%), Query Frame = 1 

Query: 3   SESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEK 62
           S+ ++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++LI+KA+   + L NEFQ GG
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQ 182
           PRAA HY + E K L L + VK+W  L++ PS HK A++AVPTAAQW E YN  VKEM Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKLWVKLDQYPSVHKVAEVAVPTAAQWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
           KGY VF Y P VPV +I+ AFKQGEA+EKE+          + H+    SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEEKEDA---------TAHKDPDSSDSD 229

[Close]
BLAST of Cla022966 vs. NCBI nr
Match: gi|224053483|ref|XP_002297837.1| (hypothetical protein POPTR_0001s13940g [Populus trichocarpa])

HSP 1 Score: 270.8 bits (691), Expect = 2.3e-69
Identity = 136/233 (58.37%), Postives = 168/233 (72.10%), Query Frame = 1 

Query: 3   SESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEK 62
           S+ ++L+LKHLGFVRIA IQ +VCV+NLYDYAK+NSGPLRSAV +VE  VN VV P YEK
Sbjct: 6   SKRKDLDLKHLGFVRIAAIQVLVCVSNLYDYAKRNSGPLRSAVGTVEGTVNAVVGPVYEK 65

Query: 63  LRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGG 122
            +  PD +LVFLD KVD+AT +FDKRAPP+AKQ V   ++LI+KA+   + L NEFQ GG
Sbjct: 66  FKGVPDHLLVFLDHKVDEATIKFDKRAPPVAKQVVSQARYLIEKASEKAKVLANEFQAGG 125

Query: 123 PRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQ 182
           PRAA HY + E K L L + VK+W  L++ PS HK A++AVPTAA W E YN  VKEM Q
Sbjct: 126 PRAAVHYVSTESKHLFLTESVKVWVKLDQYPSVHKVAEVAVPTAAHWSEKYNHFVKEMSQ 185

Query: 183 KGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSD 236
           KGY VF Y P VPV +I+ AFKQGEA++KE+          + H+    SDSD
Sbjct: 186 KGYVVFGYLPVVPVDEISNAFKQGEAEKKEDA---------TAHKDSDSSDSD 229

[Close]
BLAST of Cla022966 vs. NCBI nr
Match: gi|1009176565|ref|XP_015869499.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Ziziphus jujuba])

HSP 1 Score: 265.0 bits (676), Expect = 1.3e-67
Identity = 136/237 (57.38%), Postives = 166/237 (70.04%), Query Frame = 1 

Query: 1   MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAY 60
           ME+ES+N ELKHLGFVR+A IQ +VC++NLYDYAKQNSGPLRS V +VE AV TVV P Y
Sbjct: 7   METESRNQELKHLGFVRVAAIQALVCMSNLYDYAKQNSGPLRSVVGTVEGAVTTVVGPVY 66

Query: 61  EKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQT 120
           EK +  PDD L F D+KVD+AT++FDK APPLAKQ V      + KA+   ++ VN  QT
Sbjct: 67  EKFKDVPDDFLSFADKKVDEATYKFDKHAPPLAKQVVSRAHCYMVKASEKARKFVNVAQT 126

Query: 121 GGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEM 180
           GGPRAA H AA EYKQLVL+Q V++W G+N+ P  H  A  A PTAAQ  E YNR VK++
Sbjct: 127 GGPRAAIHCAATEYKQLVLNQAVRLWVGVNQCPPVHTVAQKAAPTAAQLSEKYNRTVKDL 186

Query: 181 RQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSD 238
             +GY VF Y P VP+ +IAKAFKQGE++        T ++  S    G  SDSDSD
Sbjct: 187 TTRGYTVFGYFPLVPIDEIAKAFKQGESE--------TGKKMDSDASSGDKSDSDSD 235

The following BLAST results are available for this feature:
BLAST of Cla022966 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y1736_ARATH2.5e-5547.08REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1[more]
SRP_VITRI8.4e-3536.82Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1[more]
Y3550_ARATH1.3e-3037.23REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1[more]
Y2778_ARATH7.6e-2832.04REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1[more]
Y5513_ORYSJ3.9e-2432.61REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonic... [more]
BLAST of Cla022966 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS04_CUCSA6.8e-12491.46Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589910 PE=4 SV=1[more]
A9P8H1_POPTR1.6e-6958.37Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13940g PE=2 SV=1[more]
M5XHT7_PRUPE9.9e-6758.15Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010801mg PE=4 SV=1[more]
A0A067H2V6_CITSI4.9e-6657.45Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026954mg PE=4 SV=1[more]
V4TDB7_9ROSI2.4e-6557.45Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032648mg PE=4 SV=1[more]
BLAST of Cla022966 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090481|ref|XP_008446040.1|2.7e-12694.29PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo][more]
gi|449435073|ref|XP_004135320.1|9.7e-12491.46PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis sativus][more]
gi|743916328|ref|XP_011002135.1|4.7e-7059.23PREDICTED: REF/SRPP-like protein At1g67360 [Populus euphratica][more]
gi|224053483|ref|XP_002297837.1|2.3e-6958.37hypothetical protein POPTR_0001s13940g [Populus trichocarpa][more]
gi|1009176565|ref|XP_015869499.1|1.3e-6757.38PREDICTED: REF/SRPP-like protein At1g67360 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008802REF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0080186 developmental vegetative growth
biological_process GO:0034389 lipid particle organization
biological_process GO:0009555 pollen development
biological_process GO:0045927 positive regulation of growth
biological_process GO:1902584 positive regulation of response to water deprivation
biological_process GO:0006414 translational elongation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005811 lipid particle
cellular_component GO:0005773 vacuole
molecular_function GO:0003674 molecular_function
molecular_function GO:0003746 translation elongation factor activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU08265watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU29416watermelon EST collection version 2.0transcribed_cluster
WMU58623watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla022966Cla022966.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU08265WMU08265transcribed_cluster
WMU29416WMU29416transcribed_cluster
WMU58623WMU58623transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008802Rubber elongation factorPFAMPF05755REFcoord: 5..205
score: 2.4
NoneNo IPR availablePANTHERPTHR33732FAMILY NOT NAMEDcoord: 1..224
score: 1.9E
NoneNo IPR availablePANTHERPTHR33732:SF2SUBFAMILY NOT NAMEDcoord: 1..224
score: 1.9E