ClCG11G013690 (gene) Watermelon (Charleston Gray)
The following sequences are available for this feature:
Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACAAACCCGTTTTCATCTTCCCTATCTTTTTGATCGGAAAAGGAAACTACTAGAGAAGCAAATTCCCGGAGACAAACCTCACTGTAAGATTGTTGAATCTCTGTTCAAGTTTCTGTTCTTAATTCGTTATGGCTTTTCTTTTCTTTTCTTTTCTTTTTTCTTTTGTTTCTCAAAGGAATTGCTGTCCTCATCGATTGGAATTGACAGATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTATTCTTTATTTTCTGTAATTCTTTGGACTTACTTTATATCTTTGGATGACTTGCTTGGATCGATTTAGTAAATTAGTTTTTAGTTTGTTTTCATGATTCATTCGATTGTACCGGCGAATATCGATCTGGCTGTGTTTGATTAGATGGAGATGTTTTGCATTCCAAATTGTTTTTTTCACCAATAAATCAAACTCTGTATGATGAGATTTATCGAGATATTGTTTTCTCTTGAAATGAAAGTTTATAATCAAGTGTCTCCGACTGGCCGACTGAAGTACAATTCATGTATGTCCTTACCTGGTAGAAATTTGAGTTTCAACAATCAATTTCAAGAAAAAGATGTGATGAAATCTATTTCAGATTAGTGTAGAATAGTATGACTTTACGGGGAGACCTATGGGAGTTTCTTCGTAACAAGTTAGAGAAGACGAAATGCCTGAGTTTCTTCGTAATTCATTCAAAAGGACAACAAGAGTCTACAGTACAAATTATGTGTTCTCTGGGACAATGATTTCTGGCTGAAATGAACATTGTTAATTGTGGTGTGGAATGAATTTGTTGCAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCGGATTCGGATTCGGTTGCTGGTCCTAATTAGAAAATGGGTTTTAGTTTTCATTAACTAATCATGTGGTTTGTAAGCTTGTATGATTCATGATGTTCGAGCACAACCAACGCTGATGAACAGCAGCTATGGAAATTGCAAGTTTGAAGCCTTAGAAGGCTGTAAATGTGTGAATGGCACTTTTGATGTTGTAATGGAAACTAGGGGTAATATTTGTATATTAAGTGAACGAGTAACTGAAGTTTTAGAATGTCATGCTTGCCTTTTAGGTTCCAAGTTTTTGGAAGAAGATGATAAAATCAGTCCTGCCTAATAGCATGTTTGGAG TACAAACCCGTTTTCATCTTCCCTATCTTTTTGATCGGAAAAGGAAACTACTAGAGAAGCAAATTCCCGGAGACAAACCTCACTATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCGGATTCGGATTCGGTTGCTGGTCCTAATTAGAAAATGGGTTTTAGTTTTCATTAACTAATCATGTGGTTTGTAAGCTTGTATGATTCATGATGTTCGAGCACAACCAACGCTGATGAACAGCAGCTATGGAAATTGCAAGTTTGAAGCCTTAGAAGGCTGTAAATGTGTGAATGGCACTTTTGATGTTGTAATGGAAACTAGGGGTAATATTTGTATATTAAGTGAACGAGTAACTGAAGTTTTAGAATGTCATGCTTGCCTTTTAGGTTCCAAGTTTTTGGAAGAAGATGATAAAATCAGTCCTGCCTAATAGCATGTTTGGAG ATGGAGAGCGAAAGCCAGAATTTGGAGCTGAAGCATCTAGGTTTTGTTAGGATCGCTGTGATTCAGACGATTGTTTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCTGGACCTCTGAGATCTGCGGTTGAAAGTGTGGAGAGCGCTGTTAACACCGTTGTAACTCCTGCTTATGAGAAGCTTCGAATCGCGCCTGATGATGTTCTTGTTTTTCTTGACGAGAAGGTTGACAAAGCTACACATGAGTTTGATAAGCGTGCTCCTCCTCTAGCAAAACAAGCCGTTCAAATTACGCAGCATTTAATTCAAAAAGCTGCTAGAACTGGACAAGAACTTGTGAATGAGTTTCAAACTGGCGGGCCACGCGCAGCGTTTCACTATGCAGCGAACGAGTACAAGCAGTTGGTTCTAGACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGCTTCCATCGTTCCACAAGTTTGCGGACATGGCGGTGCCAACCGCGGCTCAGTGGTTGGAGAGCTACAACCGCAAGGTGAAAGAAATGAGGCAGAAGGGTTACCATGTCTTCGATTATTGTCCTGAAGTTCCTGTGAGTAAGATAGCAAAGGCATTTAAGCAGGGCGAGGCGAAGGAGAAGGAAGAAACACCTCCAACTACTCCTGAACAAGCTCCATCCAAGCACGAACAGGGTTCGGGTTCAGATTCGGATTCGGATTCGGTTGCTGGTCCTAATTAG MESESQNLELKHLGFVRIAVIQTIVCVTNLYDYAKQNSGPLRSAVESVESAVNTVVTPAYEKLRIAPDDVLVFLDEKVDKATHEFDKRAPPLAKQAVQITQHLIQKAARTGQELVNEFQTGGPRAAFHYAANEYKQLVLDQGVKIWAGLNRLPSFHKFADMAVPTAAQWLESYNRKVKEMRQKGYHVFDYCPEVPVSKIAKAFKQGEAKEKEETPPTTPEQAPSKHEQGSGSDSDSDSVAGPN
BLAST of ClCG11G013690 vs. Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.5e-55 Identity = 113/240 (47.08%), Postives = 147/240 (61.25%), Query Frame = 1
BLAST of ClCG11G013690 vs. Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 8.4e-35 Identity = 81/220 (36.82%), Postives = 115/220 (52.27%), Query Frame = 1
BLAST of ClCG11G013690 vs. Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=1 SV=1) HSP 1 Score: 134.8 bits (338), Expect = 1.3e-30 Identity = 86/231 (37.23%), Postives = 114/231 (49.35%), Query Frame = 1
BLAST of ClCG11G013690 vs. Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 7.6e-28 Identity = 66/206 (32.04%), Postives = 102/206 (49.51%), Query Frame = 1
BLAST of ClCG11G013690 vs. Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2) HSP 1 Score: 113.2 bits (282), Expect = 3.9e-24 Identity = 75/230 (32.61%), Postives = 107/230 (46.52%), Query Frame = 1
BLAST of ClCG11G013690 vs. TrEMBL
Match: A0A0A0KS04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G589910 PE=4 SV=1) HSP 1 Score: 451.4 bits (1160), Expect = 6.8e-124 Identity = 225/246 (91.46%), Postives = 232/246 (94.31%), Query Frame = 1
BLAST of ClCG11G013690 vs. TrEMBL
Match: A9P8H1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13940g PE=2 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 1.6e-69 Identity = 136/233 (58.37%), Postives = 168/233 (72.10%), Query Frame = 1
BLAST of ClCG11G013690 vs. TrEMBL
Match: M5XHT7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010801mg PE=4 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 9.9e-67 Identity = 132/227 (58.15%), Postives = 156/227 (68.72%), Query Frame = 1
BLAST of ClCG11G013690 vs. TrEMBL
Match: A0A067H2V6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026954mg PE=4 SV=1) HSP 1 Score: 259.2 bits (661), Expect = 4.9e-66 Identity = 135/235 (57.45%), Postives = 167/235 (71.06%), Query Frame = 1
BLAST of ClCG11G013690 vs. TrEMBL
Match: V4TDB7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032648mg PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65 Identity = 135/235 (57.45%), Postives = 166/235 (70.64%), Query Frame = 1
BLAST of ClCG11G013690 vs. TAIR10
Match: AT1G67360.2 (AT1G67360.2 Rubber elongation factor protein (REF)) HSP 1 Score: 216.9 bits (551), Expect = 1.4e-56 Identity = 113/240 (47.08%), Postives = 147/240 (61.25%), Query Frame = 1
BLAST of ClCG11G013690 vs. TAIR10
Match: AT3G05500.1 (AT3G05500.1 Rubber elongation factor protein (REF)) HSP 1 Score: 134.8 bits (338), Expect = 7.1e-32 Identity = 86/231 (37.23%), Postives = 114/231 (49.35%), Query Frame = 1
BLAST of ClCG11G013690 vs. TAIR10
Match: AT2G47780.1 (AT2G47780.1 Rubber elongation factor protein (REF)) HSP 1 Score: 125.6 bits (314), Expect = 4.3e-29 Identity = 66/206 (32.04%), Postives = 102/206 (49.51%), Query Frame = 1
BLAST of ClCG11G013690 vs. NCBI nr
Match: gi|659090481|ref|XP_008446040.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis melo]) HSP 1 Score: 459.9 bits (1182), Expect = 2.7e-126 Identity = 231/245 (94.29%), Postives = 236/245 (96.33%), Query Frame = 1
BLAST of ClCG11G013690 vs. NCBI nr
Match: gi|449435073|ref|XP_004135320.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Cucumis sativus]) HSP 1 Score: 451.4 bits (1160), Expect = 9.7e-124 Identity = 225/246 (91.46%), Postives = 232/246 (94.31%), Query Frame = 1
BLAST of ClCG11G013690 vs. NCBI nr
Match: gi|743916328|ref|XP_011002135.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Populus euphratica]) HSP 1 Score: 273.1 bits (697), Expect = 4.7e-70 Identity = 138/233 (59.23%), Postives = 169/233 (72.53%), Query Frame = 1
BLAST of ClCG11G013690 vs. NCBI nr
Match: gi|224053483|ref|XP_002297837.1| (hypothetical protein POPTR_0001s13940g [Populus trichocarpa]) HSP 1 Score: 270.8 bits (691), Expect = 2.3e-69 Identity = 136/233 (58.37%), Postives = 168/233 (72.10%), Query Frame = 1
BLAST of ClCG11G013690 vs. NCBI nr
Match: gi|1009176565|ref|XP_015869499.1| (PREDICTED: REF/SRPP-like protein At1g67360 [Ziziphus jujuba]) HSP 1 Score: 265.0 bits (676), Expect = 1.3e-67 Identity = 136/237 (57.38%), Postives = 166/237 (70.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |