CmoCh04G015280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G015280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Restricted tev movement 2
Location	Cmo_Chr04 : 7812076 .. 7813059 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCACAAGGCCAAGAACCGCCGTCAATCCCAGCGGGTTTACAACGAGCTCTTCACTCCCAAAGTTGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCCAACTTCCTGGTCCTAATTTTGGCCTGTTCTTCATTTTCTAAACAATTTAATCATTTTTTTTTAGCTTCCGGTCTGATTTTTCCTTTGTTTTTTGGATTCGTTTGACCAGATTTCAACCAGCAGCATGTTAAGGTTAAGGTTGAAAAAGAGGCAGGGACGGTGGTGGTGACCGGAGATCGGAATGTGGGAAATAATAGGTTGCTTATATTGAATAAAACTTACCCAATTCCACGAAATTCCGTAATCGATCGAATTTCTCATACATTACGAGATGGAGTTCTCACCATTACAATGCCCAAACAAACTGCCGAGTCCGCCACGCCACCAACTACTACTCCGCTGCCCAAAGAATCAGAACAATCCACCCCTGAGAAGGGGAGAGAAGAAACTCCGTTGGAAAAATCAGCTCTGCCGGAGATGAATGGTGAAATTAAGGAACCAGAGGCGGCGGCTCTTCCGAAAGACGATTCAAGTTCATCGAAAGATAAGGGAAAATCTGCAGAACTCCAAAAGCAGGCCTCGGCGAAGGCTAATGAAGAAACTCCGGCGGCGGCGGCTGAAAGGGGTCAGGTACAAGGGGATTCCGGCAAGGCGGAAACGACGCTGGATCGGAAAATTAGCAGCCCAGATCAGAAGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGTAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTCCCGGCGGCTTCACTGTCCAAAGGATGCAGTTACTGACGACGGTGAGTCTCTCGGCGGCGGTTGTGATAGCGGTGTTGGCATATTTCGCATAA

mRNA sequence

ATGGCAACCACAAGGCCAAGAACCGCCGTCAATCCCAGCGGGTTTACAACGAGCTCTTCACTCCCAAAGTTGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCCAACTTCCTGGTCCTAATTTTGGCCTATTTCAACCAGCAGCATGTTAAGGTTAAGGTTGAAAAAGAGGCAGGGACGGTGGTGGTGACCGGAGATCGGAATGTGGGAAATAATAGGTTGCTTATATTGAATAAAACTTACCCAATTCCACGAAATTCCGTAATCGATCGAATTTCTCATACATTACGAGATGGAGTTCTCACCATTACAATGCCCAAACAAACTGCCGAGTCCGCCACGCCACCAACTACTACTCCGCTGCCCAAAGAATCAGAACAATCCACCCCTGAGAAGGGGAGAGAAGAAACTCCGTTGGAAAAATCAGCTCTGCCGGAGATGAATGGTGAAATTAAGGAACCAGAGGCGGCGGCTCTTCCGAAAGACGATTCAAGTTCATCGAAAGATAAGGGAAAATCTGCAGAACTCCAAAAGCAGGCCTCGGCGAAGGCTAATGAAGAAACTCCGGCGGCGGCGGCTGAAAGGGGTCAGGTACAAGGGGATTCCGGCAAGGCGGAAACGACGCTGGATCGGAAAATTAGCAGCCCAGATCAGAAGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGTAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTCCCGGCGGCTTCACTGTCCAAAGGATGCAGTTACTGACGACGGTGAGTCTCTCGGCGGCGGTTGTGATAGCGGTGTTGGCATATTTCGCATAA

Coding sequence (CDS)

ATGGCAACCACAAGGCCAAGAACCGCCGTCAATCCCAGCGGGTTTACAACGAGCTCTTCACTCCCAAAGTTGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCCAACTTCCTGGTCCTAATTTTGGCCTATTTCAACCAGCAGCATGTTAAGGTTAAGGTTGAAAAAGAGGCAGGGACGGTGGTGGTGACCGGAGATCGGAATGTGGGAAATAATAGGTTGCTTATATTGAATAAAACTTACCCAATTCCACGAAATTCCGTAATCGATCGAATTTCTCATACATTACGAGATGGAGTTCTCACCATTACAATGCCCAAACAAACTGCCGAGTCCGCCACGCCACCAACTACTACTCCGCTGCCCAAAGAATCAGAACAATCCACCCCTGAGAAGGGGAGAGAAGAAACTCCGTTGGAAAAATCAGCTCTGCCGGAGATGAATGGTGAAATTAAGGAACCAGAGGCGGCGGCTCTTCCGAAAGACGATTCAAGTTCATCGAAAGATAAGGGAAAATCTGCAGAACTCCAAAAGCAGGCCTCGGCGAAGGCTAATGAAGAAACTCCGGCGGCGGCGGCTGAAAGGGGTCAGGTACAAGGGGATTCCGGCAAGGCGGAAACGACGCTGGATCGGAAAATTAGCAGCCCAGATCAGAAGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGTAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTCCCGGCGGCTTCACTGTCCAAAGGATGCAGTTACTGACGACGGTGAGTCTCTCGGCGGCGGTTGTGATAGCGGTGTTGGCATATTTCGCATAA

Homology

[Close]

BLAST of CmoCh04G015280 vs. TrEMBL
Match: A0A0A0KTC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612830 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.0e-42
Identity = 142/299 (47.49%), Postives = 168/299 (56.19%), Query Frame = 1


Query: 51  HVKVKVEKEAGTVVVTGDRNVGNNRLLILNKTYPIPRNSVIDRISHTLRDGVLTITMPKQ 110
           HV V VEKEA TVVVTGDRNV   RL IL+KT+P+P+NS ID I H L+DGVLTIT+PKQ
Sbjct: 49  HVNVNVEKEARTVVVTGDRNVSTTRLQILDKTFPVPQNSKIDEIKHELQDGVLTITIPKQ 108

Query: 111 T-----------AESATPPTTTPLPKESE-------QSTPEKGREETPLEKSALPEMNGE 170
           T           AES  PP T    KE +        ST +K +EE      + PE   E
Sbjct: 109 TTEPVTAPPLQAAESTAPPDTKAETKEPDVAALTKSDSTSDKAKEEISSANVSPPETKAE 168

Query: 171 IKEPEAAALPKDDSSSSK----------------------------DKGKSAELQKQASA 230
            KEPE    P+ DS+  K                             +G S ELQKQ SA
Sbjct: 169 TKEPEEGP-PEGDSTPEKGLIDLSLGNVAPPKTKAEVEEPEVAALPKEGISEELQKQGSA 228

Query: 231 KANEE---TPA-AAAERGQVQGDSGKAETTLDRKISSPDQKKPTEKKEIENQNPEKGRES 290
           KA +E   TPA   A +  V  D  K ETT+D+ ISS +Q     KKEI N+NPE G+ES
Sbjct: 229 KATKEEAPTPAPLVAPQPPVATDYVKEETTMDQNISSQEQ-----KKEIGNENPENGKES 288

Query: 291 KTEEVDKNVGTAKIDAVTPSPRTTRVGKLPGGFTVQRMQLLTTVSLSAAVVIAVLAYFA 300
           KTEEV KN  T +    TPSPR T+VGKL G F ++R+ L TTVSLSA V +AV AYFA
Sbjct: 289 KTEEVRKNEETTENGTGTPSPRATKVGKLVGCFKIRRLPLRTTVSLSATVAVAVAAYFA 341

[Close]

BLAST of CmoCh04G015280 vs. TrEMBL
Match: A0A0A0KRC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612820 PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 71/193 (36.79%), Postives = 100/193 (51.81%), Query Frame = 1


Query: 1   MATTRPRTAVNPSGFTTSSSLPKLKKEMKTKLIFYCSNFLVLILAYFNQQHVKVKVEKEA 60
           MAT RP T+     FT     P ++K  + +     +  L L L  F +Q V V+VE+  
Sbjct: 1   MATARPETSGLRVPFT-----PNVEKRDENE-----AYILRLQLPEFKRQQVTVRVEEGK 60

Query: 61  GTVVVTGDRNVGNNRLLILNKTYPIPRNSVIDRISHTLRDGVLTITMPKQTAESATPPTT 120
             + VTG+R  G+NR    ++T+PIP   VI++IS  L+ GVL I M KQT      P  
Sbjct: 61  RMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAP-- 120

Query: 121 TPLPKESEQSTPEKGREETPL--EKSALPEMNGEIKEPEAAALPKDDSSSSKDKGKSAEL 180
            P PK++EQ T EKGREE     +K + PE     KE E   + K   S ++D GK   +
Sbjct: 121 -PRPKQNEQLTLEKGREEISALDQKISSPE-----KEIENKKVEKMKDSKTEDVGK---I 172

Query: 181 QKQASAKANEETP 192
           + + +AK    TP
Sbjct: 181 KNEETAKIGTGTP 172

[Close]

BLAST of CmoCh04G015280 vs. NCBI nr
Match: gi|449435182|ref|XP_004135374.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.1e-41
Identity = 142/299 (47.49%), Postives = 168/299 (56.19%), Query Frame = 1


Query: 51  HVKVKVEKEAGTVVVTGDRNVGNNRLLILNKTYPIPRNSVIDRISHTLRDGVLTITMPKQ 110
           HV V VEKEA TVVVTGDRNV   RL IL+KT+P+P+NS ID I H L+DGVLTIT+PKQ
Sbjct: 49  HVNVNVEKEARTVVVTGDRNVSTTRLQILDKTFPVPQNSKIDEIKHELQDGVLTITIPKQ 108

Query: 111 T-----------AESATPPTTTPLPKESE-------QSTPEKGREETPLEKSALPEMNGE 170
           T           AES  PP T    KE +        ST +K +EE      + PE   E
Sbjct: 109 TTEPVTAPPLQAAESTAPPDTKAETKEPDVAALTKSDSTSDKAKEEISSANVSPPETKAE 168

Query: 171 IKEPEAAALPKDDSSSSK----------------------------DKGKSAELQKQASA 230
            KEPE    P+ DS+  K                             +G S ELQKQ SA
Sbjct: 169 TKEPEEGP-PEGDSTPEKGLIDLSLGNVAPPKTKAEVEEPEVAALPKEGISEELQKQGSA 228

Query: 231 KANEE---TPA-AAAERGQVQGDSGKAETTLDRKISSPDQKKPTEKKEIENQNPEKGRES 290
           KA +E   TPA   A +  V  D  K ETT+D+ ISS +Q     KKEI N+NPE G+ES
Sbjct: 229 KATKEEAPTPAPLVAPQPPVATDYVKEETTMDQNISSQEQ-----KKEIGNENPENGKES 288

Query: 291 KTEEVDKNVGTAKIDAVTPSPRTTRVGKLPGGFTVQRMQLLTTVSLSAAVVIAVLAYFA 300
           KTEEV KN  T +    TPSPR T+VGKL G F ++R+ L TTVSLSA V +AV AYFA
Sbjct: 289 KTEEVRKNEETTENGTGTPSPRATKVGKLVGCFKIRRLPLRTTVSLSATVAVAVAAYFA 341

[Close]

BLAST of CmoCh04G015280 vs. NCBI nr
Match: gi|659091755|ref|XP_008446715.1| (PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo])

HSP 1 Score: 135.2 bits (339), Expect = 1.9e-28
Identity = 105/198 (53.03%), Postives = 126/198 (63.64%), Query Frame = 1


Query: 111 TAESATPPTTTPLPKE------SEQSTPEKGREETPLEKSALPEMNGEIKEPEAAALPKD 170
           ++ +A+PP T    KE       + STPEKGRE+      A PE    IKEP+AAALPKD
Sbjct: 191 SSANASPPETKAEIKEPAAALPKDDSTPEKGREDISPGNVAPPESKEAIKEPKAAALPKD 250

Query: 171 DSSSSKDKGKSAELQKQASAKANEE---TPAA-AAERGQVQGDSGKAETTLDRKISSPDQ 230
           +       GKSA LQKQ SAKA +E   TPA   A +     + GK ETTLD  I+S ++
Sbjct: 251 E-------GKSAALQKQGSAKATKEEAPTPAPLVASQPPADRNYGKEETTLDHNINSQEK 310

Query: 231 KKPTEKKEIENQNPEKGRESKTEEVDKNVGTAKIDAVTPSPRTTRVGKLPGGFTVQRMQL 290
            K     EIENQNPEKG+ESKTEEV KN  TA+I   TPSPR T+VGKL GGFT++ + L
Sbjct: 311 SK-----EIENQNPEKGKESKTEEVRKNEETAEIGTGTPSPRGTKVGKLAGGFTIRSLPL 370

Query: 291 LTTVSLSAAVVIAVLAYF 299
             TVS+SA VVIAV AYF
Sbjct: 371 RVTVSVSATVVIAVAAYF 376

[Close]

BLAST of CmoCh04G015280 vs. NCBI nr
Match: gi|700196976|gb|KGN52153.1| (hypothetical protein Csa_5G612820 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.2e-08
Identity = 71/193 (36.79%), Postives = 100/193 (51.81%), Query Frame = 1


Query: 1   MATTRPRTAVNPSGFTTSSSLPKLKKEMKTKLIFYCSNFLVLILAYFNQQHVKVKVEKEA 60
           MAT RP T+     FT     P ++K  + +     +  L L L  F +Q V V+VE+  
Sbjct: 1   MATARPETSGLRVPFT-----PNVEKRDENE-----AYILRLQLPEFKRQQVTVRVEEGK 60

Query: 61  GTVVVTGDRNVGNNRLLILNKTYPIPRNSVIDRISHTLRDGVLTITMPKQTAESATPPTT 120
             + VTG+R  G+NR    ++T+PIP   VI++IS  L+ GVL I M KQT      P  
Sbjct: 61  RMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAP-- 120

Query: 121 TPLPKESEQSTPEKGREETPL--EKSALPEMNGEIKEPEAAALPKDDSSSSKDKGKSAEL 180
            P PK++EQ T EKGREE     +K + PE     KE E   + K   S ++D GK   +
Sbjct: 121 -PRPKQNEQLTLEKGREEISALDQKISSPE-----KEIENKKVEKMKDSKTEDVGK---I 172

Query: 181 QKQASAKANEETP 192
           + + +AK    TP
Sbjct: 181 KNEETAKIGTGTP 172

[Close]

BLAST of CmoCh04G015280 vs. NCBI nr
Match: gi|659092330|ref|XP_008447015.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.4e-07
Identity = 68/200 (34.00%), Postives = 104/200 (52.00%), Query Frame = 1


Query: 1   MATTRPRTAVNPSGFTTSSSLPKLKKEMKTKLIFYCSNFLVLILAYFNQQHVKVKVEKEA 60
           MAT RP T+     FT     P +++  + +     +  L L L  F +Q V V+VE+  
Sbjct: 1   MATARPGTSRLRVPFT-----PNVEERDENE-----AYILRLQLPEFKRQQVTVRVEEGK 60

Query: 61  GTVVVTGDRNVGNNRLLILNKTYPIPRNSVIDRISHTLRDGVLTITMPKQTAESATPPTT 120
             V VTG+R  G+N+    ++T+PIP   +ID+IS  L++GVL+I M KQT      P  
Sbjct: 61  RVVKVTGERQAGDNQWFRFDETFPIPEICLIDKISVQLKNGVLSIRMIKQTTGPVPAP-- 120

Query: 121 TPLPKESEQSTPEKGREETPLEKSALPEMNGEIKEPEAAA---LPKDDSSSSKDKGKSAE 180
            P PK +EQ T +KGREE  +   A   +N  +K     A   L +  SS+ K + ++ +
Sbjct: 121 -PRPKHNEQLTLQKGREE--ISAVAAVAVNDSVKGDSGKAKRTLDQKISSAEKKEIENKK 180

Query: 181 LQKQASAKA-------NEET 191
           ++K+  +K        NEET
Sbjct: 181 VEKRKDSKTKDVGKIKNEET 185

The following BLAST results are available for this feature:

BLAST of CmoCh04G015280 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G015280 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTC3_CUCSA	8.0e-42	47.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612830 PE=3 SV=1	[more]
A0A0A0KRC2_CUCSA	1.5e-08	36.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612820 PE=3 SV=1	[more]

BLAST of CmoCh04G015280 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G015280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435182\|ref\|XP_004135374.1\|	1.1e-41	47.49	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis sativus]	[more]
gi\|659091755\|ref\|XP_008446715.1\|	1.9e-28	53.03	PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo]	[more]
gi\|700196976\|gb\|KGN52153.1\|	2.2e-08	36.79	hypothetical protein Csa_5G612820 [Cucumis sativus]	[more]
gi\|659092330\|ref\|XP_008447015.1\|	1.4e-07	34.00	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002068	A-crystallin/Hsp20_dom
IPR008978	HSP20-like_chaperone

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G015280.1	CmoCh04G015280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 45..115 score: 1.
IPR002068	Alpha crystallin/Hsp20 domain	PROFILE	PS01031	HSP20	coord: 1..109 score: 8
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 79..114 score: 6.
IPR008978	HSP20-like chaperone	unknown	SSF49764	HSP20-like chaperones	coord: 40..113 score: 4.5
None	No IPR available	PANTHER	PTHR11527:SF131	SUBFAMILY NOT NAMED	coord: 37..129 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G015280	Cucsa.282910	Cucumber (Gy14) v1	cgycmoB0793
CmoCh04G015280	CmaCh18G009690	Cucurbita maxima (Rimu)	cmacmoB420
CmoCh04G015280	CmaCh04G014570	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G015280	Cla020460	Watermelon (97103) v1	cmowmB693
CmoCh04G015280	Csa5G612820	Cucumber (Chinese Long) v2	cmocuB738
CmoCh04G015280	MELO3C012318	Melon (DHL92) v3.5.1	cmomeB631
CmoCh04G015280	ClCG05G022090	Watermelon (Charleston Gray)	cmowcgB654
CmoCh04G015280	CSPI05G25960	Wild cucumber (PI 183967)	cmocpiB745
CmoCh04G015280	Lsi04G001830	Bottle gourd (USVL1VR-Ls)	cmolsiB660
CmoCh04G015280	Cp4.1LG09g03510	Cucurbita pepo (Zucchini)	cmocpeB651
CmoCh04G015280	Cp4.1LG01g14210	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G015280	MELO3C012318.2	Melon (DHL92) v3.6.1	cmomedB720
CmoCh04G015280	CsaV3_5G035050	Cucumber (Chinese Long) v3	cmocucB0874
CmoCh04G015280	Cla97C05G103830	Watermelon (97103) v2	cmowmbB729
CmoCh04G015280	Bhi07G000571	Wax gourd	cmowgoB0897
CmoCh04G015280	CsGy5G025440	Cucumber (Gy14) v2	cgybcmoB650
CmoCh04G015280	Carg19013	Silver-seed gourd	carcmoB1412
CmoCh04G015280	Carg01885	Silver-seed gourd	carcmoB1138

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G015280	CmoCh18G009710	Cucurbita moschata (Rifu)	cmocmoB336

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G015280	Watermelon (97103) v1	cmowmB662