CsGy5G025440 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G025440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	inactive protein RESTRICTED TEV MOVEMENT 2
Location	Chr5 : 29714282 .. 29715200 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCATCACAACCCGCCATTTTTTCCGGCGACCAGAATGGCAACGGCAAGGCCAGAGACCTCCGGACTCCGGGTTCCCTTCACTCCCAATGTTGAAAAAAGAGATGAAAACGAAGCCTACATTCTTCGCCTCCAACTTCCTGGTTCAAATTCTCCCCTTCTTTCTTTTTTGTTTTTTGATTCTCATCTGATCGTTTTTATTTTTTTGGTTTTTAGAATTCAAGAGGCAGCAAGTTACGGTTAGGGTTGAAGAAGGGAAACGAATGATGAAGGTCACCGGAGAACGGCTGGCGGGGGACAATCGATGGTTCCGATTTGATGAAACTTTCCCAATTCCTGAAATTTGCGTAATCAACAAAATTTCTGTTCAATTAAAGAAGGGAGTTCTCTTCATTAGAATGATCAAACAAACCAACGGACCGGTGCCGGCGCCTCCGCGGCCCAAACAAAACGAGCAATTAACCCTAGAAAAGGGGAGAGAAGAAATCTCGGCACTGGATCAGAAAATTAGTAGCCCAGAGAAGGAAATTGAAAACAAAAAAGTAGAAAAGATGAAGGATTCGAAGACAGAGGATGTGGGTAAGATTAAAAACGAAGAAACCGCGAAGATCGGCACCGGGACTCCATATCCGAGAACGACAAGTGTTGGAAGGATGTCGGTACCGGCAATGGTAAGTCTAGCGGCGGCAGTTGTGATAGCCGTGGCGGCATATTTCATATATCTTTTCTTAGTTCAAGAAGTAACGAAGCTAAGTGGAAAATTATTTAAATTAACAAAATGATCGAAAATAATTACAAATACACATTTGATAATAAACAAGTTAGTTCATTCTTGCTATATCTAAAAATAGTTCTTATTTATCTATAATTGTGAACTTAAATCGAATGGAATTTCAAACATATATATAATCATCCATTTT

mRNA sequence

ACCCATCACAACCCGCCATTTTTTCCGGCGACCAGAATGGCAACGGCAAGGCCAGAGACCTCCGGACTCCGGGTTCCCTTCACTCCCAATGTTGAAAAAAGAGATGAAAACGAAGCCTACATTCTTCGCCTCCAACTTCCTGAATTCAAGAGGCAGCAAGTTACGGTTAGGGTTGAAGAAGGGAAACGAATGATGAAGGTCACCGGAGAACGGCTGGCGGGGGACAATCGATGGTTCCGATTTGATGAAACTTTCCCAATTCCTGAAATTTGCGTAATCAACAAAATTTCTGTTCAATTAAAGAAGGGAGTTCTCTTCATTAGAATGATCAAACAAACCAACGGACCGGTGCCGGCGCCTCCGCGGCCCAAACAAAACGAGCAATTAACCCTAGAAAAGGGGAGAGAAGAAATCTCGGCACTGGATCAGAAAATTAGTAGCCCAGAGAAGGAAATTGAAAACAAAAAAGTAGAAAAGATGAAGGATTCGAAGACAGAGGATGTGGGTAAGATTAAAAACGAAGAAACCGCGAAGATCGGCACCGGGACTCCATATCCGAGAACGACAAGTGTTGGAAGGATGTCGGTACCGGCAATGGTAAGTCTAGCGGCGGCAGTTGTGATAGCCGTGGCGGCATATTTCATATATCTTTTCTTAGTTCAAGAAGTAACGAAGCTAAGTGGAAAATTATTTAAATTAACAAAATGATCGAAAATAATTACAAATACACATTTGATAATAAACAAGTTAGTTCATTCTTGCTATATCTAAAAATAGTTCTTATTTATCTATAATTGTGAACTTAAATCGAATGGAATTTCAAACATATATATAATCATCCATTTT

Coding sequence (CDS)

ATGGCAACGGCAAGGCCAGAGACCTCCGGACTCCGGGTTCCCTTCACTCCCAATGTTGAAAAAAGAGATGAAAACGAAGCCTACATTCTTCGCCTCCAACTTCCTGAATTCAAGAGGCAGCAAGTTACGGTTAGGGTTGAAGAAGGGAAACGAATGATGAAGGTCACCGGAGAACGGCTGGCGGGGGACAATCGATGGTTCCGATTTGATGAAACTTTCCCAATTCCTGAAATTTGCGTAATCAACAAAATTTCTGTTCAATTAAAGAAGGGAGTTCTCTTCATTAGAATGATCAAACAAACCAACGGACCGGTGCCGGCGCCTCCGCGGCCCAAACAAAACGAGCAATTAACCCTAGAAAAGGGGAGAGAAGAAATCTCGGCACTGGATCAGAAAATTAGTAGCCCAGAGAAGGAAATTGAAAACAAAAAAGTAGAAAAGATGAAGGATTCGAAGACAGAGGATGTGGGTAAGATTAAAAACGAAGAAACCGCGAAGATCGGCACCGGGACTCCATATCCGAGAACGACAAGTGTTGGAAGGATGTCGGTACCGGCAATGGTAAGTCTAGCGGCGGCAGTTGTGATAGCCGTGGCGGCATATTTCATATATCTTTTCTTAGTTCAAGAAGTAACGAAGCTAAGTGGAAAATTATTTAAATTAACAAAATGA

Protein sequence

MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLEKGREEISALDQKISSPEKEIENKKVEKMKDSKTEDVGKIKNEETAKIGTGTPYPRTTSVGRMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK

Homology

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BLAST of CsGy5G025440 vs. NCBI nr
Match: KGN52153.1 (hypothetical protein Csa_5G612820 [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 1.5e-106
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60
           MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL
Sbjct: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60

Query: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120
           AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE
Sbjct: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120

Query: 121 KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG 180
           KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG
Sbjct: 121 KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG 180

Query: 181 RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK 224
           RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK
Sbjct: 181 RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK 223

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BLAST of CsGy5G025440 vs. NCBI nr
Match: XP_008447015.1 (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis melo])

HSP 1 Score: 271.2 bits (692), Expect = 3.2e-69
Identity = 161/229 (70.31%), Postives = 173/229 (75.55%), Query Frame = 0


Query: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60
           MATARP TS LRVPFTPNVE+RDENEAYILRLQLPEFKRQQVTVRVEEGKR++KVTGER 
Sbjct: 1   MATARPGTSRLRVPFTPNVEERDENEAYILRLQLPEFKRQQVTVRVEEGKRVVKVTGERQ 60

Query: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120
           AGDN+WFRFDETFPIPEIC+I+KISVQLK GVL IRMIKQT GPVPAPPRPK NEQLTL+
Sbjct: 61  AGDNQWFRFDETFPIPEICLIDKISVQLKNGVLSIRMIKQTTGPVPAPPRPKHNEQLTLQ 120

Query: 121 KGREEISA--------------------LDQKISSPEKE-IENKKVEKMKDXXXXXXXXX 180
           KGREEISA                    LDQKISS EK+            XXXXX    
Sbjct: 121 KGREEISAVAAVAVNDSVKGDSGKAKRTLDQKISSAEKKXXXXXXXXXXXXXXXXXVGKI 180

Query: 181 XXXXTAKIGTGTPYPRTTSVGRMSVPAMVSLAAAVVIAVAAYFIYLFLV 209
               T  I TGTP+P  TSVGR+S+PAMVSLAAA VIAV A FIYLFL+
Sbjct: 181 KNEETTMISTGTPFPGVTSVGRLSLPAMVSLAAATVIAVVANFIYLFLL 229

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BLAST of CsGy5G025440 vs. NCBI nr
Match: XP_022945513.1 (proteoglycan 4 isoform X1 [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 68/136 (50.00%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 1   MATARPETSGL-----------RVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEG 60
           MAT RP T+GL             PFTPNV ++DENEA+ILRL+LP+F  Q V V+VEEG
Sbjct: 1   MATGRPRTAGLGALRRQSLRAYNEPFTPNVVEKDENEAHILRLELPDFNEQHVKVKVEEG 60

Query: 61  KRMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPP 120
            R + VTG+RL   NR    ++T+PIP+ C I+K+  +L+ G L I M KQT     APP
Sbjct: 61  ARTVVVTGDRLLATNRLLILNKTYPIPQDCSIDKVHHKLEAGFLIITMPKQT-----APP 120

Query: 121 -RPKQNEQLTLEKGRE 125
             PK  EQ T EKG E
Sbjct: 121 AAPKDPEQKTPEKGSE 131

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BLAST of CsGy5G025440 vs. NCBI nr
Match: XP_022945514.1 (proteoglycan 4 isoform X2 [Cucurbita moschata])

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-22
Identity = 68/136 (50.00%), Postives = 85/136 (62.50%), Query Frame = 0


Query: 1   MATARPETSGL-----------RVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEG 60
           MAT RP T+GL             PFTPNV ++DENEA+ILRL+LP+F  Q V V+VEEG
Sbjct: 1   MATGRPRTAGLGALRRQSLRAYNEPFTPNVVEKDENEAHILRLELPDFNEQHVKVKVEEG 60

Query: 61  KRMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPP 120
            R + VTG+RL   NR    ++T+PIP+ C I+K+  +L+ G L I M KQT     APP
Sbjct: 61  ARTVVVTGDRLLATNRLLILNKTYPIPQDCSIDKVHHKLEAGFLIITMPKQT-----APP 120

Query: 121 -RPKQNEQLTLEKGRE 125
             PK  EQ T EKG E
Sbjct: 121 AAPKDPEQKTPEKGSE 131

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BLAST of CsGy5G025440 vs. NCBI nr
Match: XP_023541033.1 (proteoglycan 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.6 bits (283), Expect = 8.6e-22
Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 0


Query: 1   MATARPETSGL-----------RVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEG 60
           MAT RP T GL             PFTPNV ++DENEA+ILRL+LP+F  Q V V+VEEG
Sbjct: 1   MATGRPRTVGLGALRRQSLRAYNEPFTPNVVEKDENEAHILRLELPDFNEQHVKVKVEEG 60

Query: 61  KRMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVP-AP 120
            R + VTG+RL   NR    ++T+PIP+ C I+K+  +L+ G L I M KQT  P   A 
Sbjct: 61  ARTVVVTGDRLLATNRLLILNKTYPIPQDCSIDKVHHKLEAGFLTITMPKQTAPPAAVAT 120

Query: 121 PRPKQNEQLTLEKGREE 126
             PK  EQ T EKG  E
Sbjct: 121 AAPKDPEQTTPEKGSGE 137

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BLAST of CsGy5G025440 vs. TAIR10
Match: AT5G04890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-13
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    K  VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. TAIR10
Match: AT5G20970.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-10
Identity = 39/113 (34.51%), Postives = 59/113 (52.21%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P      E +A +L   LP FK++Q+ V V    R +++TGER  G N+W RF +  P
Sbjct: 13  FEPATRWTSEPDAEVLVADLPGFKKEQLKVSV-TATRKLRLTGERPTGGNKWIRFHQEIP 72

Query: 75  IPEICVINKISVQLKKGVLFIRMIK-QTNGPVPAPPRP---KQNEQLTLEKGR 124
           +P    I+ +S   K   L+IR  K +T  P   PP P   K ++Q   ++G+
Sbjct: 73  VPLTVDIDSVSAMFKDNKLYIRHPKLKTEIPQTKPPTPVIMKPHDQHERKQGQ 124

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BLAST of CsGy5G025440 vs. TAIR10
Match: AT2G27140.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-07
Identity = 34/109 (31.19%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P    + E     L + LP F+++Q+ V+V    R ++V G+R AG N+W RF + FP
Sbjct: 17  FEPLSNWKTEQGFEALTIYLPGFRKEQLKVQVTT-TRKLRVMGDRPAGANKWIRFRKEFP 76

Query: 75  IPEICVINKISVQLKKGVLFIRMIK-QTNGPVPA--------PPRPKQN 115
           IP    ++ +S + +   L +R+ + +  G  P+        PP PK+N
Sbjct: 77  IPPNIDVDSVSAKFEGANLVVRLPRTEPMGKQPSPIGTATKPPPVPKEN 124

[Close]

BLAST of CsGy5G025440 vs. TAIR10
Match: AT3G10680.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 4.7e-06
Identity = 27/100 (27.00%), Postives = 45/100 (45.00%), Query Frame = 0


Query: 5   RPETSGLRVP---------FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKV 64
           RP   G R P         F P  +  +   +  L + LP F R Q+ ++ +E  R +++
Sbjct: 7   RPRPGGGRHPPPLAPTVSSFKPRAQWTNSGSSIFLYVNLPGFYRDQIEIKKDERTRTVQI 66

Query: 65  TGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFI 96
            G+R        RF E + +P+ C + K+S     G+L I
Sbjct: 67  QGQRPLSAQTKARFSEAYRVPDTCDMTKLSTSFSHGLLTI 106

[Close]

BLAST of CsGy5G025440 vs. TAIR10
Match: AT1G53540.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 42.7 bits (99), Expect = 3.4e-04
Identity = 25/92 (27.17%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 19  VEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL----AGDNRWFR------ 78
           V+ R+  EA++ +  LP  ++++V V VE+G  +++++GER       +++W R      
Sbjct: 52  VDWRETPEAHVFKADLPGLRKEEVKVEVEDG-NILQISGERSNENEEKNDKWHRVERSSG 111

Query: 79  -FDETFPIPEICVINKISVQLKKGVLFIRMIK 100
            F   F +PE   + +I   ++ GVL + + K
Sbjct: 112 KFTRRFRLPENAKMEEIKASMENGVLSVTVPK 142

[Close]

BLAST of CsGy5G025440 vs. Swiss-Prot
Match: sp|D9UC01|RTM2D_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-12
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    KK VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKKNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. Swiss-Prot
Match: sp|D9UBX6|RTM2B_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    K  VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. Swiss-Prot
Match: sp|D9UBX4|RTM2C_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    K  VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. Swiss-Prot
Match: sp|Q9M670|RTM2_ARATH (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.2e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    K  VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. Swiss-Prot
Match: sp|D5K211|RTM2A_ARATH (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.3e-12
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E +D+ EA IL + L  F ++Q+ V      +M++VTGER   + +W RF+E F 
Sbjct: 19  FVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEVFT 78

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNE 116
           +P+ C+++KI    K  VL I M K+T   V   P   + E
Sbjct: 79  VPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTE 119

[Close]

BLAST of CsGy5G025440 vs. TrEMBL
Match: tr|A0A0A0KRC2|A0A0A0KRC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612820 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 9.7e-107
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0


Query: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60
           MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL
Sbjct: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60

Query: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120
           AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE
Sbjct: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120

Query: 121 KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG 180
           KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG
Sbjct: 121 KGREEISALDQKISSPEKEIENKKVEKMKDXXXXXXXXXXXXXTAKIGTGTPYPRTTSVG 180

Query: 181 RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK 224
           RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK
Sbjct: 181 RMSVPAMVSLAAAVVIAVAAYFIYLFLVQEVTKLSGKLFKLTK 223

[Close]

BLAST of CsGy5G025440 vs. TrEMBL
Match: tr|A0A1S3BH11|A0A1S3BH11_CUCME (inactive protein RESTRICTED TEV MOVEMENT 2 OS=Cucumis melo OX=3656 GN=LOC103489563 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 2.1e-69
Identity = 161/229 (70.31%), Postives = 173/229 (75.55%), Query Frame = 0


Query: 1   MATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERL 60
           MATARP TS LRVPFTPNVE+RDENEAYILRLQLPEFKRQQVTVRVEEGKR++KVTGER 
Sbjct: 1   MATARPGTSRLRVPFTPNVEERDENEAYILRLQLPEFKRQQVTVRVEEGKRVVKVTGERQ 60

Query: 61  AGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPRPKQNEQLTLE 120
           AGDN+WFRFDETFPIPEIC+I+KISVQLK GVL IRMIKQT GPVPAPPRPK NEQLTL+
Sbjct: 61  AGDNQWFRFDETFPIPEICLIDKISVQLKNGVLSIRMIKQTTGPVPAPPRPKHNEQLTLQ 120

Query: 121 KGREEISA--------------------LDQKISSPEKE-IENKKVEKMKDXXXXXXXXX 180
           KGREEISA                    LDQKISS EK+            XXXXX    
Sbjct: 121 KGREEISAVAAVAVNDSVKGDSGKAKRTLDQKISSAEKKXXXXXXXXXXXXXXXXXVGKI 180

Query: 181 XXXXTAKIGTGTPYPRTTSVGRMSVPAMVSLAAAVVIAVAAYFIYLFLV 209
               T  I TGTP+P  TSVGR+S+PAMVSLAAA VIAV A FIYLFL+
Sbjct: 181 KNEETTMISTGTPFPGVTSVGRLSLPAMVSLAAATVIAVVANFIYLFLL 229

[Close]

BLAST of CsGy5G025440 vs. TrEMBL
Match: tr|A0A1S3BFR5|A0A1S3BFR5_CUCME (neurofilament heavy polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103489354 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 60/155 (38.71%), Postives = 83/155 (53.55%), Query Frame = 0


Query: 1   MATARPETSGLRV----------PFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGK 60
           MAT RP    L +          PFTP+VE+ DENEA+ILRLQLP+F  + V V VE   
Sbjct: 1   MATPRPRIGNLGIRRQSMRAYNEPFTPDVEEIDENEAHILRLQLPDF--EHVNVNVEREA 60

Query: 61  RMMKVTGERLAGDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPPR 120
           R + VTG+R   + R    ++TFPIP+ C  + +  +L+ GVL I ++KQ   PV APP 
Sbjct: 61  RTVVVTGDRHVSNTRLLILNKTFPIPQNCKSDGVEHKLQDGVLTITILKQITEPVTAPPL 120

Query: 121 PKQNE----QLTLEKGREEISALDQKISSPEKEIE 142
                    +   E    + +AL +  S P+K  E
Sbjct: 121 QAAESTAPPETKAENKEPDTAALTKSESVPDKAKE 153

[Close]

BLAST of CsGy5G025440 vs. TrEMBL
Match: tr|A0A0A0KTC3|A0A0A0KTC3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612830 PE=3 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.3e-14
Identity = 51/108 (47.22%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 2   ATARPETSGLRVPFTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLA 61
           A  R         FTPNVE+ DENEA+ILRLQLP F    V V VE+  R + VTG+R  
Sbjct: 12  AVRRQSVRAYNDTFTPNVEEIDENEAHILRLQLPGF--SHVNVNVEKEARTVVVTGDRNV 71

Query: 62  GDNRWFRFDETFPIPEICVINKISVQLKKGVLFIRMIKQTNGPVPAPP 110
              R    D+TFP+P+   I++I  +L+ GVL I + KQT  PV APP
Sbjct: 72  STTRLQILDKTFPVPQNSKIDEIKHELQDGVLTITIPKQTTEPVTAPP 117

[Close]

BLAST of CsGy5G025440 vs. TrEMBL
Match: tr|A0A2N9FUN8|A0A2N9FUN8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22259 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 15  FTPNVEKRDENEAYILRLQLPEFKRQQVTVRVEEGKRMMKVTGERLAGDNRWFRFDETFP 74
           F P  E+++E EA I+ + LP F ++++ +      R ++V GER  G+NRW  F+ETFP
Sbjct: 26  FQPMSERQEEEEATIILVHLPGFVKERIRITFVNSSRTVRVQGERPVGENRWSHFNETFP 85

Query: 75  IPEICVINKISVQLKKGVLFIRMIKQTNGPV----------PAPPRPKQNEQLTLEKGRE 127
           +PE CV +KI  +  +G+L I M KQ    V           AP  PK + Q   +K +E
Sbjct: 86  VPENCVSDKIQGKFHQGILTITMPKQVIARVGPRKKAITTQRAPSPPKSSAQTKPQKVQE 145

The following BLAST results are available for this feature:

BLAST of CsGy5G025440 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52153.1	1.5e-106	100.00	hypothetical protein Csa_5G612820 [Cucumis sativus]	[more]
XP_008447015.1	3.2e-69	70.31	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis melo]	[more]
XP_022945513.1	2.3e-22	50.00	proteoglycan 4 isoform X1 [Cucurbita moschata]	[more]
XP_022945514.1	2.3e-22	50.00	proteoglycan 4 isoform X2 [Cucurbita moschata]	[more]
XP_023541033.1	8.6e-22	48.91	proteoglycan 4 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy5G025440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04890.1	4.0e-13	36.63	HSP20-like chaperones superfamily protein	[more]
AT5G20970.1	3.1e-10	34.51	HSP20-like chaperones superfamily protein	[more]
AT2G27140.1	1.5e-07	31.19	HSP20-like chaperones superfamily protein	[more]
AT3G10680.1	4.7e-06	27.00	HSP20-like chaperones superfamily protein	[more]
AT1G53540.1	3.4e-04	27.17	HSP20-like chaperones superfamily protein	[more]

BLAST of CsGy5G025440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|D9UC01\|RTM2D_ARATH	2.5e-12	37.62	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX6\|RTM2B_ARATH	7.2e-12	36.63	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|D9UBX4\|RTM2C_ARATH	7.2e-12	36.63	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]
sp\|Q9M670\|RTM2_ARATH	7.2e-12	36.63	Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S...	[more]
sp\|D5K211\|RTM2A_ARATH	9.3e-12	36.63	Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT...	[more]

BLAST of CsGy5G025440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KRC2\|A0A0A0KRC2_CUCSA	9.7e-107	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612820 PE=3 SV=1	[more]
tr\|A0A1S3BH11\|A0A1S3BH11_CUCME	2.1e-69	70.31	inactive protein RESTRICTED TEV MOVEMENT 2 OS=Cucumis melo OX=3656 GN=LOC1034895...	[more]
tr\|A0A1S3BFR5\|A0A1S3BFR5_CUCME	2.3e-15	38.71	neurofilament heavy polypeptide-like OS=Cucumis melo OX=3656 GN=LOC103489354 PE=...	[more]
tr\|A0A0A0KTC3\|A0A0A0KTC3_CUCSA	4.3e-14	47.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G612830 PE=3 SV=1	[more]
tr\|A0A2N9FUN8\|A0A2N9FUN8_FAGSY	1.1e-12	37.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22259 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008978	HSP20-like_chaperone
IPR002068	A-crystallin/Hsp20_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G025440.1	CsGy5G025440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..132
None	No IPR available	PANTHER	PTHR43670	FAMILY NOT NAMED	coord: 15..163
None	No IPR available	PANTHER	PTHR43670:SF14	PROTEIN RESTRICTED TEV MOVEMENT 2	coord: 15..163
None	No IPR available	CDD	cd06464	ACD_sHsps-like	coord: 22..99 e-value: 7.46676E-9 score: 49.4749
IPR002068	Alpha crystallin/Hsp20 domain	PFAM	PF00011	HSP20	coord: 22..102 e-value: 2.8E-6 score: 27.3
IPR002068	Alpha crystallin/Hsp20 domain	PROSITE	PS01031	SHSP	coord: 10..120 score: 14.826
IPR008978	HSP20-like chaperone	GENE3D	G3DSA:2.60.40.790		coord: 11..101 e-value: 4.7E-12 score: 47.7
IPR008978	HSP20-like chaperone	SUPERFAMILY	SSF49764	HSP20-like chaperones	coord: 12..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G025440	Cla020460	Watermelon (97103) v1	cgybwmB377
CsGy5G025440	Csa5G612820	Cucumber (Chinese Long) v2	cgybcuB223
CsGy5G025440	MELO3C012318	Melon (DHL92) v3.5.1	cgybmeB319
CsGy5G025440	ClCG05G022090	Watermelon (Charleston Gray)	cgybwcgB359
CsGy5G025440	CSPI05G25960	Wild cucumber (PI 183967)	cgybcpiB225
CsGy5G025440	CmaCh18G009690	Cucurbita maxima (Rimu)	cgybcmaB626
CsGy5G025440	CmoCh04G015280	Cucurbita moschata (Rifu)	cgybcmoB650
CsGy5G025440	CmoCh18G009710	Cucurbita moschata (Rifu)	cgybcmoB603
CsGy5G025440	Lsi04G001850	Bottle gourd (USVL1VR-Ls)	cgyblsiB337
CsGy5G025440	Cp4.1LG01g14210	Cucurbita pepo (Zucchini)	cgybcpeB648
CsGy5G025440	Cp4.1LG09g03510	Cucurbita pepo (Zucchini)	cgybcpeB581
CsGy5G025440	MELO3C012318.2	Melon (DHL92) v3.6.1	cgybmedB318
CsGy5G025440	CsaV3_5G035050	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G025440	Cla97C05G103830	Watermelon (97103) v2	cgybwmbB365
CsGy5G025440	Bhi07G000571	Wax gourd	cgybwgoB493
CsGy5G025440	Carg01885	Silver-seed gourd	carcgybB0831
CsGy5G025440	Carg19013	Silver-seed gourd	carcgybB1035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G025440	Wax gourd	cgybwgoB477
CsGy5G025440	Cucurbita maxima (Rimu)	cgybcmaB672
CsGy5G025440	Watermelon (97103) v1	cgybwmB352