CmaCh04G014570 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G014570
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 7412686 .. 7414269 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACCACAAGGCCAAGAACCGCCGGACTCGGCGTCTACCGCCGTCAATCCCAGCGGGTTTACAACGAGCCCTTCACTCCCAACGTCGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCAAACTTCCTGGTCCTAATTTTGGCCTGTTCTTCGTTTTTTAAACAATTTAATCCTTTTTTTTTTAACAATTTTTCTTTTGTTTTTGGATTCGAGTAGGTTAAAAATGTTGAGATATGATTCAAAATATTCTAAAAGATATGATTCAAAAAGTAGTTGAGATATAATTAAAATATTCAAACTAAAGTAGAAGAGTGTTAGTAGATTTGAATTTTTCTAGATTTGGATGATTTACTATTTATGTACTATGTAACCCTATAACCATCACAGGTAAGTAACAATAATAAAGCACTATTCATCTATTTTATCTATTCTTATTTTTTTCATTATAGCCAAGTTCGTTCGACACGAGGGTGAGTGATTATTTTCTTTCACAAAACAAAAATATCAGTAGCTGGCTTTTCTTCCTCTGCATCGTTGTTACCGATCTTTAATGGTGAGAAATATGAGTGGTGGAGCATCAAAGATGAAAACCTTGCTCAAATCGCATGAGCTATGAGACTTGGTATGAAGACCTTGCTCATATCGCAGGAGCTATGGGACTTGGTGGAGCACGAGTTTGTTGATCTATTAGAACCCACAATAGAAGAAAAGGAGAGACTAAGAGAAACCAAGAAAAACGATGTCAAGGCTTTATTCATTATTAAGCAGGCAGTTCATGAGACTATCTTCTCACGAATTGCAGCAGCAACCCCATCAAAGCAGGCATGATCAATTCTACCGAAGGAGTTTCTAGGAGATTCAAAGGTTATGATAGTGAAATTGCAATCTCTAAGACGTGATTTTGAAACTATACTCATGACTCATGGCGAATCAATTGCTGATTTTTTGTCAAGAGGAATGACAAAAGTCAGTCAGATGCGTACTTATGAAGAGAAAATTTGTTGCAAGGTGTTGAGAAACTTGACTCCAAAGTTTGACCGATGTGGTGGCTGCCATAGAAGAAGCTAATGATTTATCCATGCTCTTCGTTAATGAATTGATGGGCTCACTTCAGGCCCATGAGACAAGAATCAGAGGCGGCGGCTCTTCCGAAAGACGATTCAAGTTCACCAAAAGTTAAGGGAAAATCTGCAGAACTCCAAAAGCAGGCCTCGGCGAAGGCTAATGAAGAAAATCCGACGCCGGCGGCGGCGGCGGCTGAAAGGGGTCCGGTGCAAGGGGATTCCGGCAAGGCGGAAACGACGCTGGATCGGAAAATTAGCAGCCCGTATCAGTAGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGCAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTGCCGGCGGCTTCACTGTCCGAAGGATGCAGTTACTGACGACGGTGAGTCTCTGGGCGGCGGTTGTGACAGCGGTGGCGGCATATTTCGCATAG

mRNA sequence

ATGGCAACCACAAGGCCAAGAACCGCCGGACTCGGCGTCTACCGCCGTCAATCCCAGCGGGTTTACAACGAGCCCTTCACTCCCAACGTCGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCAAACTTCCTGGTCCTAATTTTGGCCTGTTCTTCGCCTCGGCGAAGGCTAATGAAGAAAATCCGACGCCGGCGGCGGCGGCGGCTGAAAGGGGTCCGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGCAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTGCCGGCGGCTTCACTGTCCGAAGGATGCAGTTACTGACGACGGTGAGTCTCTGGGCGGCGGTTGTGACAGCGGTGGCGGCATATTTCGCATAG

Coding sequence (CDS)

ATGGCAACCACAAGGCCAAGAACCGCCGGACTCGGCGTCTACCGCCGTCAATCCCAGCGGGTTTACAACGAGCCCTTCACTCCCAACGTCGAAGAAAGAGATGAAAACGAAGCTCATATTCTACTGCTCAAACTTCCTGGTCCTAATTTTGGCCTGTTCTTCGCCTCGGCGAAGGCTAATGAAGAAAATCCGACGCCGGCGGCGGCGGCGGCTGAAAGGGGTCCGAAGCCAACAGAGAAGAAAGAAATTGAAAATCAAAATCCAGAAAAGGGGAGGGAATCTAAAACAGAGGAGGCAGATAAGAATGTGGGAACAGCCAAGATCGACGCCGTAACTCCATCTCCGAGAACGACCAGAGTAGGGAAACTTGCCGGCGGCTTCACTGTCCGAAGGATGCAGTTACTGACGACGGTGAGTCTCTGGGCGGCGGTTGTGACAGCGGTGGCGGCATATTTCGCATAG

Protein sequence

MATTRPRTAGLGVYRRQSQRVYNEPFTPNVEERDENEAHILLLKLPGPNFGLFFASAKANEENPTPAAAAAERGPKPTEKKEIENQNPEKGRESKTEEADKNVGTAKIDAVTPSPRTTRVGKLAGGFTVRRMQLLTTVSLWAAVVTAVAAYFA

Homology

[Close]

BLAST of CmaCh04G014570 vs. TrEMBL
Match: A0A0A0KTC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612830 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.0e-13
Identity = 60/116 (51.72%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 56  SAKAN-EENPTPAAAAAERGPKPTE-----------------KKEIENQNPEKGRESKTE 115
           SAKA  EE PTPA   A + P  T+                 KKEI N+NPE G+ESKTE
Sbjct: 226 SAKATKEEAPTPAPLVAPQPPVATDYVKEETTMDQNISSQEQKKEIGNENPENGKESKTE 285

Query: 116 EADKNVGTAKIDAVTPSPRTTRVGKLAGGFTVRRMQLLTTVSLWAAVVTAVAAYFA 154
           E  KN  T +    TPSPR T+VGKL G F +RR+ L TTVSL A V  AVAAYFA
Sbjct: 286 EVRKNEETTENGTGTPSPRATKVGKLVGCFKIRRLPLRTTVSLSATVAVAVAAYFA 341

[Close]

BLAST of CmaCh04G014570 vs. NCBI nr
Match: gi|659091755|ref|XP_008446715.1| (PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo])

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 63/115 (54.78%), Postives = 71/115 (61.74%), Query Frame = 1


Query: 56  SAKAN-EENPTPAAAAAERGP-----------------KPTEKKEIENQNPEKGRESKTE 115
           SAKA  EE PTPA   A + P                    + KEIENQNPEKG+ESKTE
Sbjct: 262 SAKATKEEAPTPAPLVASQPPADRNYGKEETTLDHNINSQEKSKEIENQNPEKGKESKTE 321

Query: 116 EADKNVGTAKIDAVTPSPRTTRVGKLAGGFTVRRMQLLTTVSLWAAVVTAVAAYF 153
           E  KN  TA+I   TPSPR T+VGKLAGGFT+R + L  TVS+ A VV AVAAYF
Sbjct: 322 EVRKNEETAEIGTGTPSPRGTKVGKLAGGFTIRSLPLRVTVSVSATVVIAVAAYF 376

[Close]

BLAST of CmaCh04G014570 vs. NCBI nr
Match: gi|449435182|ref|XP_004135374.1| (PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 5.7e-13
Identity = 60/116 (51.72%), Postives = 68/116 (58.62%), Query Frame = 1


Query: 56  SAKAN-EENPTPAAAAAERGPKPTE-----------------KKEIENQNPEKGRESKTE 115
           SAKA  EE PTPA   A + P  T+                 KKEI N+NPE G+ESKTE
Sbjct: 226 SAKATKEEAPTPAPLVAPQPPVATDYVKEETTMDQNISSQEQKKEIGNENPENGKESKTE 285

Query: 116 EADKNVGTAKIDAVTPSPRTTRVGKLAGGFTVRRMQLLTTVSLWAAVVTAVAAYFA 154
           E  KN  T +    TPSPR T+VGKL G F +RR+ L TTVSL A V  AVAAYFA
Sbjct: 286 EVRKNEETTENGTGTPSPRATKVGKLVGCFKIRRLPLRTTVSLSATVAVAVAAYFA 341

The following BLAST results are available for this feature:

BLAST of CmaCh04G014570 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTC3_CUCSA	4.0e-13	51.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G612830 PE=3 SV=1	[more]

BLAST of CmaCh04G014570 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091755\|ref\|XP_008446715.1\|	2.7e-15	54.78	PREDICTED: neurofilament heavy polypeptide-like [Cucumis melo]	[more]
gi\|449435182\|ref\|XP_004135374.1\|	5.7e-13	51.72	PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G014570.1	CmaCh04G014570.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G014570	Cucsa.282910	Cucumber (Gy14) v1	cgycmaB0801
CmaCh04G014570	Csa5G612830	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G014570	MELO3C012318	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G014570	CSPI05G25970	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G014570	CmoCh04G015280	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G014570	CmoCh18G009710	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G014570	Lsi04G001830	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G014570	Cp4.1LG09g03510	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G014570	Cp4.1LG01g14210	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G014570	MELO3C012318.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G014570	CsaV3_5G035060	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G014570	Bhi07G000571	Wax gourd	cmawgoB0897
CmaCh04G014570	CsGy5G025450	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G014570	Carg01885	Silver-seed gourd	carcmaB1170
CmaCh04G014570	Carg19013	Silver-seed gourd	carcmaB1457

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G014570	CmaCh18G009690	Cucurbita maxima (Rimu)	cmacmaB402

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G014570	Watermelon (97103) v2	cmawmbB758
CmaCh04G014570	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G014570	Watermelon (97103) v1	cmawmB667
CmaCh04G014570	Watermelon (97103) v1	cmawmB699