CmoCh04G011600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G011600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTRICHOME BIREFRINGENCE-LIKE 33
LocationCmo_Chr04 : 5916083 .. 5916835 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCGTGAGTTCAATTCCCATTACTTTTTTTATGATGACTTACGAGTTTAAAAGCTTTTAAATCTAGTCCTTTATAATGTCGTTTATACAAATTTCTTAACTTAGATATTTTTCATAATTTAACATGGTAATATCATTATTATTATTATTTGTTTAATTTAGTGGTGAAATTGGAATTTGTTTGATTTATTTATTTCTATATAATTATTTTTGGGGGTTAGAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGGTCTCTCTCTCTCTCTGTTTTCTTACATTTTTCAGTTTTTTTTTTTNTTTTTTTTTTTTTTTTTGTCACCTTTAATTTTGCACGAGCTTGGATGAAATAGTTCTTTAA

mRNA sequence

ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTGGATGAAATAGTTCTTTAA

Coding sequence (CDS)

ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTGGATGAAATAGTTCTTTAA
Homology
[Close]
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.7e-47
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKP SP S +SSS      + RK RFSPYLFTLL FI FV+VLYGED  CIF Q     +
Sbjct: 1   MKPSSPISLTSSS------IARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFV 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P   +P   KK EKL FAIGK  EE CDVFSG+WVRDEV+RPLY+E +CPYIQPQLTCQ
Sbjct: 61  LPPSRTPEKNKKSEKLAFAIGKT-EESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLD 146
           EHGRPD+ YQ+WRWQP+ CDLPS +
Sbjct: 121 EHGRPDKDYQFWRWQPNHCDLPSFN 138

[Close]
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 68/162 (41.98%), Postives = 81/162 (50.00%), Query Frame = 1 

Query: 17  SPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL---------------- 76
           SPS  RK R + + FT+L FI   A +YG D      + L                    
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 77  ----APARPSPATQKKWEKLP---------FAIGKLKEEGCDVFSGRWVRDEVTRPLYDE 136
               +P  PSP         P         FA+GK  E GCDVF G WV+D  TRPLY E
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPE-GCDVFKGNWVKDWSTRPLYRE 126

Query: 137 SDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           S+CPYIQPQLTC+ HGRPD  YQ WRW+P  C LPS +  V+
Sbjct: 127 SECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFNATVM 167

[Close]
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match: TBL31_ARATH (Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-18
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 85  EEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSL 144
           +E C+VF G+WV D V+ PLY E  CPY+  Q TCQ +GRPD  YQ WRW+P  CDLP  
Sbjct: 64  DESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRF 123

Query: 145 DEIVL 150
           + + L
Sbjct: 124 NALKL 128

[Close]
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match: TBL30_ARATH (Protein trichome birefringence-like 30 OS=Arabidopsis thaliana GN=TBL30 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.3e-17
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1 

Query: 53  SQQLQLNLAPARPSPATQ-KKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCP 112
           +  LQ ++ P + S   + KK + +P        E CDVF+G+WV D VT PLY E +C 
Sbjct: 48  THNLQEHITPLQQSKEDKDKKTDLVPL-------EFCDVFTGKWVLDNVTHPLYKEDECE 107

Query: 113 YIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           ++   + C  +GRPD  YQ WRWQP  C LP  D  +L
Sbjct: 108 FLSEWVACTRNGRPDSKYQKWRWQPQDCSLPRFDSKLL 138

[Close]
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match: TBL35_ARATH (Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 84  KEEGCDVFSGRWVRDEVTR-PLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDL 142
           +E+ CDVFSG+WV D  +  PL+ ES CPY+  QL CQ+HGR D  YQ+WRWQPH C+L
Sbjct: 106 EEQKCDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNL 164

[Close]
BLAST of CmoCh04G011600 vs. TrEMBL
Match: A0A0A0KM73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.4e-63
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSSS       L RKPRFSPYLFTLL FIFFVAVLY EDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSS-------LLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEE---GCDVFSGRWVRDEVTRPLYDESDCPYIQPQL 120
            P RPSPAT+KKWEKL FA GKLKEE   GCDV+SG+WVRDEVTRPLYDESDCPYIQPQL
Sbjct: 61  NPNRPSPATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQL 120

Query: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           TCQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSFN 141

[Close]
BLAST of CmoCh04G011600 vs. TrEMBL
Match: A0A061FKU9_THECC (Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-48
Identity = 99/149 (66.44%), Postives = 110/149 (73.83%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSS+        + RK R SPYLFTLL FI FVA+LYGED  CIF Q   L  
Sbjct: 20  MKPPLPSSSSA--------VLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQ---LEP 79

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP     KK EKLPFA+GK  EEGCD+FSGRWVRDE+TRP YDES+CPYIQPQLTCQ
Sbjct: 80  IPGRPISRPVKKREKLPFAVGKT-EEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQ 139

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPDR YQ WRWQPH CDLPS +  ++
Sbjct: 140 EHGRPDREYQKWRWQPHACDLPSFNATLM 156

[Close]
BLAST of CmoCh04G011600 vs. TrEMBL
Match: M5X002_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-47
Identity = 103/149 (69.13%), Postives = 112/149 (75.17%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P SS SSS      + RK R SPYLFTLL FI FVAVLYGEDL CIF QQLQL+ 
Sbjct: 1   MKPP-PFSSPSSS------VFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSP 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
                   T KK EKLPFAIGK  EEGCD+FSGRWV DE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 61  NSDPLVIRTGKKREKLPFAIGK-SEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 121 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 141

[Close]
BLAST of CmoCh04G011600 vs. TrEMBL
Match: B9S472_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687400 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-46
Identity = 94/140 (67.14%), Postives = 107/140 (76.43%), Query Frame = 1 

Query: 10  SSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNLAPARPSPAT 69
           S  SSSSS  L RK R SPYLFTLL FI FV++LYGED  C+  Q   L+    R    T
Sbjct: 3   SPLSSSSSSLLIRKARLSPYLFTLLAFIVFVSILYGEDFMCLLGQ---LDPDSDRLLTRT 62

Query: 70  QKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSY 129
           +KKWEKLPFAIGK  E GCD+FSGRWV+DE TRPLY+E +CPYIQPQLTCQEHGRPD+ Y
Sbjct: 63  EKKWEKLPFAIGKTPE-GCDLFSGRWVKDESTRPLYEEWECPYIQPQLTCQEHGRPDKDY 122

Query: 130 QYWRWQPHGCDLPSLDEIVL 150
           QYWRWQPHGCDLPS +  ++
Sbjct: 123 QYWRWQPHGCDLPSFNATLM 138

[Close]
BLAST of CmoCh04G011600 vs. TrEMBL
Match: A0A067FNA7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014836mg PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-46
Identity = 96/149 (64.43%), Postives = 111/149 (74.50%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSSS        + RK R SPYLFTLLVFI FV +LYGED+ CIF Q   ++ 
Sbjct: 1   MKPPFPSSSSSY-------VLRKARLSPYLFTLLVFIVFVTILYGEDIGCIFGQ---IDA 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP   T+K    LPFAIG+  E GCDVFSGRWVRDE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 61  LPPRPIRTTRK----LPFAIGRTPE-GCDVFSGRWVRDEANRPLYEESECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRP++ YQYWRWQPHGCDLPS +  ++
Sbjct: 121 EHGRPEKDYQYWRWQPHGCDLPSFNATLM 134

[Close]
BLAST of CmoCh04G011600 vs. TAIR10
Match: AT2G40320.1 (AT2G40320.1 TRICHOME BIREFRINGENCE-LIKE 33)

HSP 1 Score: 188.0 bits (476), Expect = 4.3e-48
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKP SP S +SSS      + RK RFSPYLFTLL FI FV+VLYGED  CIF Q     +
Sbjct: 1   MKPSSPISLTSSS------IARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFV 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P   +P   KK EKL FAIGK  EE CDVFSG+WVRDEV+RPLY+E +CPYIQPQLTCQ
Sbjct: 61  LPPSRTPEKNKKSEKLAFAIGKT-EESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLD 146
           EHGRPD+ YQ+WRWQP+ CDLPS +
Sbjct: 121 EHGRPDKDYQFWRWQPNHCDLPSFN 138

[Close]
BLAST of CmoCh04G011600 vs. TAIR10
Match: AT3G11030.1 (AT3G11030.1 TRICHOME BIREFRINGENCE-LIKE 32)

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-29
Identity = 68/162 (41.98%), Postives = 81/162 (50.00%), Query Frame = 1 

Query: 17  SPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL---------------- 76
           SPS  RK R + + FT+L FI   A +YG D      + L                    
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 77  ----APARPSPATQKKWEKLP---------FAIGKLKEEGCDVFSGRWVRDEVTRPLYDE 136
               +P  PSP         P         FA+GK  E GCDVF G WV+D  TRPLY E
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPE-GCDVFKGNWVKDWSTRPLYRE 126

Query: 137 SDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           S+CPYIQPQLTC+ HGRPD  YQ WRW+P  C LPS +  V+
Sbjct: 127 SECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFNATVM 167

[Close]
BLAST of CmoCh04G011600 vs. TAIR10
Match: AT1G73140.1 (AT1G73140.1 Plant protein of unknown function (DUF828))

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-19
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 

Query: 85  EEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSL 144
           +E C+VF G+WV D V+ PLY E  CPY+  Q TCQ +GRPD  YQ WRW+P  CDLP  
Sbjct: 64  DESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRF 123

Query: 145 DEIVL 150
           + + L
Sbjct: 124 NALKL 128

[Close]
BLAST of CmoCh04G011600 vs. TAIR10
Match: AT2G40160.2 (AT2G40160.2 Plant protein of unknown function (DUF828))

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-18
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1 

Query: 53  SQQLQLNLAPARPSPATQ-KKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCP 112
           +  LQ ++ P + S   + KK + +P        E CDVF+G+WV D VT PLY E +C 
Sbjct: 48  THNLQEHITPLQQSKEDKDKKTDLVPL-------EFCDVFTGKWVLDNVTHPLYKEDECE 107

Query: 113 YIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           ++   + C  +GRPD  YQ WRWQP  C LP  D  +L
Sbjct: 108 FLSEWVACTRNGRPDSKYQKWRWQPQDCSLPRFDSKLL 138

[Close]
BLAST of CmoCh04G011600 vs. TAIR10
Match: AT5G01620.3 (AT5G01620.3 TRICHOME BIREFRINGENCE-LIKE 35)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-18
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1 

Query: 84  KEEGCDVFSGRWVRDEVTR-PLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDL 142
           +E+ CDVFSG+WV D  +  PL+ ES CPY+  QL CQ+HGR D  YQ+WRWQPH C+L
Sbjct: 114 EEQKCDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNL 172

[Close]
BLAST of CmoCh04G011600 vs. NCBI nr
Match: gi|449460876|ref|XP_004148170.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSSS       L RKPRFSPYLFTLL FIFFVAVLY EDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSS-------LLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEE---GCDVFSGRWVRDEVTRPLYDESDCPYIQPQL 120
            P RPSPAT+KKWEKL FA GKLKEE   GCDV+SG+WVRDEVTRPLYDESDCPYIQPQL
Sbjct: 61  NPNRPSPATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQL 120

Query: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           TCQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSFN 141

[Close]
BLAST of CmoCh04G011600 vs. NCBI nr
Match: gi|659109721|ref|XP_008454841.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 4.5e-63
Identity = 121/147 (82.31%), Postives = 129/147 (87.76%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSS+       L RKPRFSPYLFTLL FIFFVA+LYGEDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSA-------LLRKPRFSPYLFTLLAFIFFVAILYGEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKE--EGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLT 120
            P RPSP T+KKWEKL FA GKLKE  EGCDV+SG+WVRDEVTRPLYDESDCPYIQPQLT
Sbjct: 61  NPDRPSPTTEKKWEKLAFAKGKLKEDGEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLT 120

Query: 121 CQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           CQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 CQEHGRPDRSYQYWRWQPHGCDLPSFN 140

[Close]
BLAST of CmoCh04G011600 vs. NCBI nr
Match: gi|658056044|ref|XP_008363773.1| (PREDICTED: protein trichome birefringence-like 33 [Malus domestica])

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP       SSSSS+ ++ RK R SPYLFTLLVFI FV VLYGEDL CIF QQLQL  
Sbjct: 24  MKPPP-----LSSSSSAAAVFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTS 83

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
           +       T KK EKLPFA+GK  +EGCD+FSGRWV DE TRPLY+ES+CPYIQPQLTCQ
Sbjct: 84  SSDPIVIRTGKKREKLPFAVGKT-DEGCDLFSGRWVFDESTRPLYEESECPYIQPQLTCQ 143

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 144 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 166

[Close]
BLAST of CmoCh04G011600 vs. NCBI nr
Match: gi|645256140|ref|XP_008233815.1| (PREDICTED: protein trichome birefringence-like 33 [Prunus mume])

HSP 1 Score: 198.4 bits (503), Expect = 9.1e-48
Identity = 104/149 (69.80%), Postives = 113/149 (75.84%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P SSSSSS      + RK R SPYLFTLL FI FVAVLYGEDL CIF QQLQL+ 
Sbjct: 35  MKPP-PFSSSSSS------VFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSP 94

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
                   T KK EKLPFAIGK  EEGCD+FSGRWV DE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 95  NSDPLVIRTGKKREKLPFAIGK-SEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQ 154

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 155 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 175

[Close]
BLAST of CmoCh04G011600 vs. NCBI nr
Match: gi|590561606|ref|XP_007008856.1| (Trichome birefringence-like 33 isoform 1 [Theobroma cacao])

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 99/149 (66.44%), Postives = 110/149 (73.83%), Query Frame = 1 

Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSS+        + RK R SPYLFTLL FI FVA+LYGED  CIF Q   L  
Sbjct: 20  MKPPLPSSSSA--------VLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQ---LEP 79

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP     KK EKLPFA+GK  EEGCD+FSGRWVRDE+TRP YDES+CPYIQPQLTCQ
Sbjct: 80  IPGRPISRPVKKREKLPFAVGKT-EEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQ 139

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPDR YQ WRWQPH CDLPS +  ++
Sbjct: 140 EHGRPDREYQKWRWQPHACDLPSFNATLM 156

The following BLAST results are available for this feature:
BLAST of CmoCh04G011600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TBL33_ARATH7.7e-4765.52Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=... [more]
TBL32_ARATH1.4e-2741.98Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=... [more]
TBL31_ARATH9.8e-1853.85Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=... [more]
TBL30_ARATH6.3e-1740.82Protein trichome birefringence-like 30 OS=Arabidopsis thaliana GN=TBL30 PE=2 SV=... [more]
TBL35_ARATH1.1e-1659.32Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=... [more]
BLAST of CmoCh04G011600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM73_CUCSA2.4e-6383.11Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1[more]
A0A061FKU9_THECC8.3e-4866.44Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 S... [more]
M5X002_PRUPE2.4e-4769.13Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1[more]
B9S472_RICCO1.6e-4667.14Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687400 PE=4 SV=1[more]
A0A067FNA7_CITSI3.5e-4664.43Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014836mg PE=4 SV=1[more]
BLAST of CmoCh04G011600 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40320.14.3e-4865.52 TRICHOME BIREFRINGENCE-LIKE 33[more]
AT3G11030.17.7e-2941.98 TRICHOME BIREFRINGENCE-LIKE 32[more]
AT1G73140.15.5e-1953.85 Plant protein of unknown function (DUF828)[more]
AT2G40160.23.6e-1840.82 Plant protein of unknown function (DUF828)[more]
AT5G01620.36.1e-1859.32 TRICHOME BIREFRINGENCE-LIKE 35[more]
BLAST of CmoCh04G011600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449460876|ref|XP_004148170.1|3.4e-6383.11PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus][more]
gi|659109721|ref|XP_008454841.1|4.5e-6382.31PREDICTED: protein trichome birefringence-like 33 [Cucumis melo][more]
gi|658056044|ref|XP_008363773.1|2.4e-4867.79PREDICTED: protein trichome birefringence-like 33 [Malus domestica][more]
gi|645256140|ref|XP_008233815.1|9.1e-4869.80PREDICTED: protein trichome birefringence-like 33 [Prunus mume][more]
gi|590561606|ref|XP_007008856.1|1.2e-4766.44Trichome birefringence-like 33 isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR025846PMR5_N_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G011600.1CmoCh04G011600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025846PMR5 N-terminal domainPFAMPF14416PMR5Ncoord: 87..140
score: 2.6
NoneNo IPR availablePANTHERPTHR32285:SF62PROTEIN TRICHOME BIREFRINGENCE-LIKE 33coord: 1..145
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G011600CmoCh04G001250Cucurbita moschata (Rifu)cmocmoB464
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G011600Cucumber (Gy14) v2cgybcmoB124
CmoCh04G011600Cucumber (Gy14) v2cgybcmoB390
CmoCh04G011600Cucumber (Gy14) v2cgybcmoB651
CmoCh04G011600Cucumber (Gy14) v2cgybcmoB820
CmoCh04G011600Melon (DHL92) v3.6.1cmomedB725
CmoCh04G011600Melon (DHL92) v3.6.1cmomedB748
CmoCh04G011600Melon (DHL92) v3.6.1cmomedB764
CmoCh04G011600Melon (DHL92) v3.6.1cmomedB769
CmoCh04G011600Silver-seed gourdcarcmoB0224
CmoCh04G011600Silver-seed gourdcarcmoB0923
CmoCh04G011600Silver-seed gourdcarcmoB1341
CmoCh04G011600Cucumber (Chinese Long) v3cmocucB0804
CmoCh04G011600Cucumber (Chinese Long) v3cmocucB0818
CmoCh04G011600Cucumber (Chinese Long) v3cmocucB0872
CmoCh04G011600Cucumber (Chinese Long) v3cmocucB0903
CmoCh04G011600Watermelon (97103) v2cmowmbB691
CmoCh04G011600Watermelon (97103) v2cmowmbB700
CmoCh04G011600Watermelon (97103) v2cmowmbB720
CmoCh04G011600Watermelon (97103) v2cmowmbB754
CmoCh04G011600Wax gourdcmowgoB0860
CmoCh04G011600Wax gourdcmowgoB0882
CmoCh04G011600Wax gourdcmowgoB0888
CmoCh04G011600Cucurbita moschata (Rifu)cmocmoB186
CmoCh04G011600Cucurbita moschata (Rifu)cmocmoB219
CmoCh04G011600Cucurbita moschata (Rifu)cmocmoB466
CmoCh04G011600Cucurbita moschata (Rifu)cmocmoB473
CmoCh04G011600Cucumber (Gy14) v1cgycmoB0372
CmoCh04G011600Cucumber (Gy14) v1cgycmoB0400
CmoCh04G011600Cucumber (Gy14) v1cgycmoB0505
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB238
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB264
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB730
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB735
CmoCh04G011600Cucurbita maxima (Rimu)cmacmoB828
CmoCh04G011600Wild cucumber (PI 183967)cmocpiB746
CmoCh04G011600Wild cucumber (PI 183967)cmocpiB691
CmoCh04G011600Wild cucumber (PI 183967)cmocpiB699
CmoCh04G011600Wild cucumber (PI 183967)cmocpiB773
CmoCh04G011600Cucumber (Chinese Long) v2cmocuB677
CmoCh04G011600Cucumber (Chinese Long) v2cmocuB688
CmoCh04G011600Cucumber (Chinese Long) v2cmocuB736
CmoCh04G011600Cucumber (Chinese Long) v2cmocuB764
CmoCh04G011600Melon (DHL92) v3.5.1cmomeB638
CmoCh04G011600Melon (DHL92) v3.5.1cmomeB658
CmoCh04G011600Melon (DHL92) v3.5.1cmomeB675
CmoCh04G011600Melon (DHL92) v3.5.1cmomeB678
CmoCh04G011600Watermelon (Charleston Gray)cmowcgB617
CmoCh04G011600Watermelon (Charleston Gray)cmowcgB625
CmoCh04G011600Watermelon (Charleston Gray)cmowcgB648
CmoCh04G011600Watermelon (Charleston Gray)cmowcgB675
CmoCh04G011600Watermelon (97103) v1cmowmB656
CmoCh04G011600Watermelon (97103) v1cmowmB668
CmoCh04G011600Watermelon (97103) v1cmowmB684
CmoCh04G011600Watermelon (97103) v1cmowmB734
CmoCh04G011600Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G011600Cucurbita pepo (Zucchini)cmocpeB675
CmoCh04G011600Cucurbita pepo (Zucchini)cmocpeB694
CmoCh04G011600Cucurbita pepo (Zucchini)cmocpeB699
CmoCh04G011600Cucurbita pepo (Zucchini)cmocpeB711
CmoCh04G011600Bottle gourd (USVL1VR-Ls)cmolsiB638
CmoCh04G011600Bottle gourd (USVL1VR-Ls)cmolsiB648
CmoCh04G011600Bottle gourd (USVL1VR-Ls)cmolsiB656
CmoCh04G011600Bottle gourd (USVL1VR-Ls)cmolsiB662