CmoCh04G011600.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011600.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TRICHOME BIREFRINGENCE-LIKE 33
Location	Cmo_Chr04 : 5916083 .. 5916835 (-)
Sequence length	450

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCGTGAGTTCAATTCCCATTACTTTTTTTATGATGACTTACGAGTTTAAAAGCTTTTAAATCTAGTCCTTTATAATGTCGTTTATACAAATTTCTTAACTTAGATATTTTTCATAATTTAACATGGTAATATCATTATTATTATTATTTGTTTAATTTAGTGGTGAAATTGGAATTTGTTTGATTTATTTATTTCTATATAATTATTTTTGGGGGTTAGAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGGTCTCTCTCTCTCTCTGTTTTCTTACATTTTTCAGTTTTTTTTTTTNTTTTTTTTTTTTTTTTTGTCACCTTTAATTTTGCACGAGCTTGGATGAAATAGTTCTTTAA

mRNA sequence

ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTGGATGAAATAGTTCTTTAA

Coding sequence (CDS)

ATGAAGCCTCCTTCTCCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCTCCCTCCCCAGAAAGCCTCGCTTCTCCCCTTACCTCTTCACTCTCTTGGTCTTCATCTTCTTCGTCGCCGTCCTCTACGGCGAAGACCTCGCCTGCATCTTCAGCCAGCAGCTCCAACTCAACCTCGCCCCCGCCCGCCCCTCCCCTGCCACCCAGAAGAAGTGGGAGAAATTGCCATTTGCAATAGGGAAACTGAAGGAGGAGGGGTGTGACGTGTTCAGTGGGAGGTGGGTTAGAGACGAGGTGACTCGGCCGCTATATGATGAGTCAGACTGTCCGTACATACAGCCGCAGCTGACGTGTCAGGAACACGGCCGGCCGGACCGGAGTTATCAGTATTGGCGGTGGCAGCCCCACGGCTGCGATCTTCCCAGCTTGGATGAAATAGTTCTTTAA

Homology

[Close]

BLAST of CmoCh04G011600.1 vs. Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.7e-47
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKP SP S +SSS      + RK RFSPYLFTLL FI FV+VLYGED  CIF Q     +
Sbjct: 1   MKPSSPISLTSSS------IARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFV 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P   +P   KK EKL FAIGK  EE CDVFSG+WVRDEV+RPLY+E +CPYIQPQLTCQ
Sbjct: 61  LPPSRTPEKNKKSEKLAFAIGKT-EESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLD 146
           EHGRPD+ YQ+WRWQP+ CDLPS +
Sbjct: 121 EHGRPDKDYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G011600.1 vs. Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.4e-27
Identity = 68/162 (41.98%), Postives = 81/162 (50.00%), Query Frame = 1


Query: 17  SPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL---------------- 76
           SPS  RK R + + FT+L FI   A +YG D      + L                    
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 77  ----APARPSPATQKKWEKLP---------FAIGKLKEEGCDVFSGRWVRDEVTRPLYDE 136
               +P  PSP         P         FA+GK  E GCDVF G WV+D  TRPLY E
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPE-GCDVFKGNWVKDWSTRPLYRE 126

Query: 137 SDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           S+CPYIQPQLTC+ HGRPD  YQ WRW+P  C LPS +  V+
Sbjct: 127 SECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFNATVM 167

[Close]

BLAST of CmoCh04G011600.1 vs. Swiss-Prot
Match: TBL31_ARATH (Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.8e-18
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 85  EEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSL 144
           +E C+VF G+WV D V+ PLY E  CPY+  Q TCQ +GRPD  YQ WRW+P  CDLP  
Sbjct: 64  DESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRF 123

Query: 145 DEIVL 150
           + + L
Sbjct: 124 NALKL 128

[Close]

BLAST of CmoCh04G011600.1 vs. Swiss-Prot
Match: TBL30_ARATH (Protein trichome birefringence-like 30 OS=Arabidopsis thaliana GN=TBL30 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.3e-17
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 53  SQQLQLNLAPARPSPATQ-KKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCP 112
           +  LQ ++ P + S   + KK + +P        E CDVF+G+WV D VT PLY E +C 
Sbjct: 48  THNLQEHITPLQQSKEDKDKKTDLVPL-------EFCDVFTGKWVLDNVTHPLYKEDECE 107

Query: 113 YIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           ++   + C  +GRPD  YQ WRWQP  C LP  D  +L
Sbjct: 108 FLSEWVACTRNGRPDSKYQKWRWQPQDCSLPRFDSKLL 138

[Close]

BLAST of CmoCh04G011600.1 vs. Swiss-Prot
Match: TBL35_ARATH (Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.1e-16
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 84  KEEGCDVFSGRWVRDEVTR-PLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDL 142
           +E+ CDVFSG+WV D  +  PL+ ES CPY+  QL CQ+HGR D  YQ+WRWQPH C+L
Sbjct: 106 EEQKCDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNL 164

[Close]

BLAST of CmoCh04G011600.1 vs. TrEMBL
Match: A0A0A0KM73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 2.4e-63
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSSS       L RKPRFSPYLFTLL FIFFVAVLY EDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSS-------LLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEE---GCDVFSGRWVRDEVTRPLYDESDCPYIQPQL 120
            P RPSPAT+KKWEKL FA GKLKEE   GCDV+SG+WVRDEVTRPLYDESDCPYIQPQL
Sbjct: 61  NPNRPSPATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQL 120

Query: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           TCQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G011600.1 vs. TrEMBL
Match: A0A061FKU9_THECC (Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 8.3e-48
Identity = 99/149 (66.44%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSS+        + RK R SPYLFTLL FI FVA+LYGED  CIF Q   L  
Sbjct: 20  MKPPLPSSSSA--------VLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQ---LEP 79

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP     KK EKLPFA+GK  EEGCD+FSGRWVRDE+TRP YDES+CPYIQPQLTCQ
Sbjct: 80  IPGRPISRPVKKREKLPFAVGKT-EEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQ 139

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPDR YQ WRWQPH CDLPS +  ++
Sbjct: 140 EHGRPDREYQKWRWQPHACDLPSFNATLM 156

[Close]

BLAST of CmoCh04G011600.1 vs. TrEMBL
Match: M5X002_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.4e-47
Identity = 103/149 (69.13%), Postives = 112/149 (75.17%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P SS SSS      + RK R SPYLFTLL FI FVAVLYGEDL CIF QQLQL+ 
Sbjct: 1   MKPP-PFSSPSSS------VFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSP 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
                   T KK EKLPFAIGK  EEGCD+FSGRWV DE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 61  NSDPLVIRTGKKREKLPFAIGK-SEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 121 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 141

[Close]

BLAST of CmoCh04G011600.1 vs. TrEMBL
Match: B9S472_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687400 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-46
Identity = 94/140 (67.14%), Postives = 107/140 (76.43%), Query Frame = 1


Query: 10  SSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNLAPARPSPAT 69
           S  SSSSS  L RK R SPYLFTLL FI FV++LYGED  C+  Q   L+    R    T
Sbjct: 3   SPLSSSSSSLLIRKARLSPYLFTLLAFIVFVSILYGEDFMCLLGQ---LDPDSDRLLTRT 62

Query: 70  QKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSY 129
           +KKWEKLPFAIGK  E GCD+FSGRWV+DE TRPLY+E +CPYIQPQLTCQEHGRPD+ Y
Sbjct: 63  EKKWEKLPFAIGKTPE-GCDLFSGRWVKDESTRPLYEEWECPYIQPQLTCQEHGRPDKDY 122

Query: 130 QYWRWQPHGCDLPSLDEIVL 150
           QYWRWQPHGCDLPS +  ++
Sbjct: 123 QYWRWQPHGCDLPSFNATLM 138

[Close]

BLAST of CmoCh04G011600.1 vs. TrEMBL
Match: A0A067FNA7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014836mg PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.5e-46
Identity = 96/149 (64.43%), Postives = 111/149 (74.50%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSSS        + RK R SPYLFTLLVFI FV +LYGED+ CIF Q   ++ 
Sbjct: 1   MKPPFPSSSSSY-------VLRKARLSPYLFTLLVFIVFVTILYGEDIGCIFGQ---IDA 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP   T+K    LPFAIG+  E GCDVFSGRWVRDE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 61  LPPRPIRTTRK----LPFAIGRTPE-GCDVFSGRWVRDEANRPLYEESECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRP++ YQYWRWQPHGCDLPS +  ++
Sbjct: 121 EHGRPEKDYQYWRWQPHGCDLPSFNATLM 134

[Close]

BLAST of CmoCh04G011600.1 vs. TAIR10
Match: AT2G40320.1 (AT2G40320.1 TRICHOME BIREFRINGENCE-LIKE 33)

HSP 1 Score: 188.0 bits (476), Expect = 4.3e-48
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKP SP S +SSS      + RK RFSPYLFTLL FI FV+VLYGED  CIF Q     +
Sbjct: 1   MKPSSPISLTSSS------IARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFV 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P   +P   KK EKL FAIGK  EE CDVFSG+WVRDEV+RPLY+E +CPYIQPQLTCQ
Sbjct: 61  LPPSRTPEKNKKSEKLAFAIGKT-EESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQ 120

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLD 146
           EHGRPD+ YQ+WRWQP+ CDLPS +
Sbjct: 121 EHGRPDKDYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G011600.1 vs. TAIR10
Match: AT3G11030.1 (AT3G11030.1 TRICHOME BIREFRINGENCE-LIKE 32)

HSP 1 Score: 124.0 bits (310), Expect = 7.7e-29
Identity = 68/162 (41.98%), Postives = 81/162 (50.00%), Query Frame = 1


Query: 17  SPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL---------------- 76
           SPS  RK R + + FT+L FI   A +YG D      + L                    
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 77  ----APARPSPATQKKWEKLP---------FAIGKLKEEGCDVFSGRWVRDEVTRPLYDE 136
               +P  PSP         P         FA+GK  E GCDVF G WV+D  TRPLY E
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPE-GCDVFKGNWVKDWSTRPLYRE 126

Query: 137 SDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           S+CPYIQPQLTC+ HGRPD  YQ WRW+P  C LPS +  V+
Sbjct: 127 SECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFNATVM 167

[Close]

BLAST of CmoCh04G011600.1 vs. TAIR10
Match: AT1G73140.1 (AT1G73140.1 Plant protein of unknown function (DUF828))

HSP 1 Score: 91.3 bits (225), Expect = 5.5e-19
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1


Query: 85  EEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSL 144
           +E C+VF G+WV D V+ PLY E  CPY+  Q TCQ +GRPD  YQ WRW+P  CDLP  
Sbjct: 64  DESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRF 123

Query: 145 DEIVL 150
           + + L
Sbjct: 124 NALKL 128

[Close]

BLAST of CmoCh04G011600.1 vs. TAIR10
Match: AT2G40160.2 (AT2G40160.2 Plant protein of unknown function (DUF828))

HSP 1 Score: 88.6 bits (218), Expect = 3.6e-18
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 1


Query: 53  SQQLQLNLAPARPSPATQ-KKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCP 112
           +  LQ ++ P + S   + KK + +P        E CDVF+G+WV D VT PLY E +C 
Sbjct: 48  THNLQEHITPLQQSKEDKDKKTDLVPL-------EFCDVFTGKWVLDNVTHPLYKEDECE 107

Query: 113 YIQPQLTCQEHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           ++   + C  +GRPD  YQ WRWQP  C LP  D  +L
Sbjct: 108 FLSEWVACTRNGRPDSKYQKWRWQPQDCSLPRFDSKLL 138

[Close]

BLAST of CmoCh04G011600.1 vs. TAIR10
Match: AT5G01620.3 (AT5G01620.3 TRICHOME BIREFRINGENCE-LIKE 35)

HSP 1 Score: 87.8 bits (216), Expect = 6.1e-18
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1


Query: 84  KEEGCDVFSGRWVRDEVTR-PLYDESDCPYIQPQLTCQEHGRPDRSYQYWRWQPHGCDL 142
           +E+ CDVFSG+WV D  +  PL+ ES CPY+  QL CQ+HGR D  YQ+WRWQPH C+L
Sbjct: 114 EEQKCDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNL 172

[Close]

BLAST of CmoCh04G011600.1 vs. NCBI nr
Match: gi|449460876|ref|XP_004148170.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 123/148 (83.11%), Postives = 129/148 (87.16%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSSS       L RKPRFSPYLFTLL FIFFVAVLY EDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSS-------LLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKEE---GCDVFSGRWVRDEVTRPLYDESDCPYIQPQL 120
            P RPSPAT+KKWEKL FA GKLKEE   GCDV+SG+WVRDEVTRPLYDESDCPYIQPQL
Sbjct: 61  NPNRPSPATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQL 120

Query: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           TCQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 TCQEHGRPDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G011600.1 vs. NCBI nr
Match: gi|659109721|ref|XP_008454841.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 4.5e-63
Identity = 121/147 (82.31%), Postives = 129/147 (87.76%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPPSP SSSS+       L RKPRFSPYLFTLL FIFFVA+LYGEDLACIFSQQL+L+L
Sbjct: 1   MKPPSPISSSSA-------LLRKPRFSPYLFTLLAFIFFVAILYGEDLACIFSQQLELDL 60

Query: 61  APARPSPATQKKWEKLPFAIGKLKE--EGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLT 120
            P RPSP T+KKWEKL FA GKLKE  EGCDV+SG+WVRDEVTRPLYDESDCPYIQPQLT
Sbjct: 61  NPDRPSPTTEKKWEKLAFAKGKLKEDGEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLT 120

Query: 121 CQEHGRPDRSYQYWRWQPHGCDLPSLD 146
           CQEHGRPDRSYQYWRWQPHGCDLPS +
Sbjct: 121 CQEHGRPDRSYQYWRWQPHGCDLPSFN 140

[Close]

BLAST of CmoCh04G011600.1 vs. NCBI nr
Match: gi|658056044|ref|XP_008363773.1| (PREDICTED: protein trichome birefringence-like 33 [Malus domestica])

HSP 1 Score: 200.3 bits (508), Expect = 2.4e-48
Identity = 101/149 (67.79%), Postives = 114/149 (76.51%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP       SSSSS+ ++ RK R SPYLFTLLVFI FV VLYGEDL CIF QQLQL  
Sbjct: 24  MKPPP-----LSSSSSAAAVFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTS 83

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
           +       T KK EKLPFA+GK  +EGCD+FSGRWV DE TRPLY+ES+CPYIQPQLTCQ
Sbjct: 84  SSDPIVIRTGKKREKLPFAVGKT-DEGCDLFSGRWVFDESTRPLYEESECPYIQPQLTCQ 143

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 144 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 166

[Close]

BLAST of CmoCh04G011600.1 vs. NCBI nr
Match: gi|645256140|ref|XP_008233815.1| (PREDICTED: protein trichome birefringence-like 33 [Prunus mume])

HSP 1 Score: 198.4 bits (503), Expect = 9.1e-48
Identity = 104/149 (69.80%), Postives = 113/149 (75.84%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P SSSSSS      + RK R SPYLFTLL FI FVAVLYGEDL CIF QQLQL+ 
Sbjct: 35  MKPP-PFSSSSSS------VFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSP 94

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
                   T KK EKLPFAIGK  EEGCD+FSGRWV DE  RPLY+ES+CPYIQPQLTCQ
Sbjct: 95  NSDPLVIRTGKKREKLPFAIGK-SEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQ 154

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPD+ YQ WRWQPHGCDLPS +  ++
Sbjct: 155 EHGRPDKDYQKWRWQPHGCDLPSFNATLM 175

[Close]

BLAST of CmoCh04G011600.1 vs. NCBI nr
Match: gi|590561606|ref|XP_007008856.1| (Trichome birefringence-like 33 isoform 1 [Theobroma cacao])

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-47
Identity = 99/149 (66.44%), Postives = 110/149 (73.83%), Query Frame = 1


Query: 1   MKPPSPNSSSSSSSSSSPSLPRKPRFSPYLFTLLVFIFFVAVLYGEDLACIFSQQLQLNL 60
           MKPP P+SSS+        + RK R SPYLFTLL FI FVA+LYGED  CIF Q   L  
Sbjct: 20  MKPPLPSSSSA--------VLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQ---LEP 79

Query: 61  APARPSPATQKKWEKLPFAIGKLKEEGCDVFSGRWVRDEVTRPLYDESDCPYIQPQLTCQ 120
            P RP     KK EKLPFA+GK  EEGCD+FSGRWVRDE+TRP YDES+CPYIQPQLTCQ
Sbjct: 80  IPGRPISRPVKKREKLPFAVGKT-EEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQ 139

Query: 121 EHGRPDRSYQYWRWQPHGCDLPSLDEIVL 150
           EHGRPDR YQ WRWQPH CDLPS +  ++
Sbjct: 140 EHGRPDREYQKWRWQPHACDLPSFNATLM 156

The following BLAST results are available for this feature:

BLAST of CmoCh04G011600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBL33_ARATH	7.7e-47	65.52	Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=...	[more]
TBL32_ARATH	1.4e-27	41.98	Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=...	[more]
TBL31_ARATH	9.8e-18	53.85	Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=...	[more]
TBL30_ARATH	6.3e-17	40.82	Protein trichome birefringence-like 30 OS=Arabidopsis thaliana GN=TBL30 PE=2 SV=...	[more]
TBL35_ARATH	1.1e-16	59.32	Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=...	[more]

BLAST of CmoCh04G011600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM73_CUCSA	2.4e-63	83.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1	[more]
A0A061FKU9_THECC	8.3e-48	66.44	Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 S...	[more]
M5X002_PRUPE	2.4e-47	69.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1	[more]
B9S472_RICCO	1.6e-46	67.14	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0687400 PE=4 SV=1	[more]
A0A067FNA7_CITSI	3.5e-46	64.43	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g014836mg PE=4 SV=1	[more]

BLAST of CmoCh04G011600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40320.1	4.3e-48	65.52	TRICHOME BIREFRINGENCE-LIKE 33	[more]
AT3G11030.1	7.7e-29	41.98	TRICHOME BIREFRINGENCE-LIKE 32	[more]
AT1G73140.1	5.5e-19	53.85	Plant protein of unknown function (DUF828)	[more]
AT2G40160.2	3.6e-18	40.82	Plant protein of unknown function (DUF828)	[more]
AT5G01620.3	6.1e-18	59.32	TRICHOME BIREFRINGENCE-LIKE 35	[more]

BLAST of CmoCh04G011600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460876\|ref\|XP_004148170.1\|	3.4e-63	83.11	PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus]	[more]
gi\|659109721\|ref\|XP_008454841.1\|	4.5e-63	82.31	PREDICTED: protein trichome birefringence-like 33 [Cucumis melo]	[more]
gi\|658056044\|ref\|XP_008363773.1\|	2.4e-48	67.79	PREDICTED: protein trichome birefringence-like 33 [Malus domestica]	[more]
gi\|645256140\|ref\|XP_008233815.1\|	9.1e-48	69.80	PREDICTED: protein trichome birefringence-like 33 [Prunus mume]	[more]
gi\|590561606\|ref\|XP_007008856.1\|	1.2e-47	66.44	Trichome birefringence-like 33 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025846	PMR5_N_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G011600	CmoCh04G011600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011600.1	CmoCh04G011600.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011600.1.CDS.3	CmoCh04G011600.1.CDS.3	CDS
CmoCh04G011600.1.CDS.2	CmoCh04G011600.1.CDS.2	CDS
CmoCh04G011600.1.CDS.1	CmoCh04G011600.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G011600.1.exon.3	CmoCh04G011600.1.exon.3	exon
CmoCh04G011600.1.exon.2	CmoCh04G011600.1.exon.2	exon
CmoCh04G011600.1.exon.1	CmoCh04G011600.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025846	PMR5 N-terminal domain	PFAM	PF14416	PMR5N	coord: 87..140 score: 2.6
None	No IPR available	PANTHER	PTHR32285:SF62	PROTEIN TRICHOME BIREFRINGENCE-LIKE 33	coord: 1..145 score: 2.0