CmoCh04G001250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TRICHOME BIREFRINGENCE-LIKE 33
Location	Cmo_Chr04 : 641972 .. 642924 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGGTGAGTTCTTATCCCTTTTACTTTCCATTGAGAATTAATATACCGTAACTTAAAAGCTTCAAAGCCTTCGGATTTAGTTGCAATGACTTTAGAGTTGGAGGTCTTCTTATTAATATTGGATAGTCGCATTTGTTTTATGGTTCTATGGTAGTTTCCATGTACTTAAGCTTCAACGTGATATTAAACCCATAATGATTGAAATCCATAAATTTTAAGTAATTTGATCCTGGTTTGATTTGTGGGTGTGGAGTGGTTAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGGTATCCCTTTTCTCTCTCTGCTTTTTCTTTTTTGTTTGATTTTATTTTCTACCTTTCATTTTCCATCTATGTAGATAAAACGGTTGTTGAAATTTAACTTAATCCCCAAAAAGAAAGGAAATATATATATATATAATATTATTTCTAATGCTTTAAAAATTTTAATTTTAATCCCTTTTAATTTTGGGCATTTAATTTTTTTAATAGGAAGGTCATTTTCCATGCATACATCTTACCTAAGTTAGCATCAAAATTGTTTGTTTTTTTTTAAGCTAGAAAGAATGAAATAGAAAATAAATAA

mRNA sequence

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGAAAGAATGAAATAGAAAATAAATAA

Coding sequence (CDS)

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGAAAGAATGAAATAGAAAATAAATAA

Homology

[Close]

BLAST of CmoCh04G001250 vs. Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-42
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1


Query: 1   MKPPPPNS--SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKP  P S  SSSI RK+RFSPYLFTL+ FI FVS+L  +D  C+F Q     + P +  
Sbjct: 1   MKPSSPISLTSSSIARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFVLPPSRT 60

Query: 61  PATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
           P   KK EKLAF IGK E  CDVFSG WVRDEV+RPLY+E +CPYI PQLTCQ+HGRPD+
Sbjct: 61  PEKNKKSEKLAFAIGKTEESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQEHGRPDK 120

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQP+ C+LP  N
Sbjct: 121 DYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G001250 vs. Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-22
Identity = 63/157 (40.13%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 9   SSSILRKSRFSPYLFTLVVFIF---------FVSILRKDL--ACVFSQQLQLDLA----- 68
           S S  RK R + + FT++ FI          F+S  R+ L    +  Q   + +      
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 69  -PATAPPATEKKREKL-------------AFEIGKL-EGCDVFSGSWVRDEVTRPLYDES 128
            P T+PP                      AF +GK  EGCDVF G+WV+D  TRPLY ES
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPEGCDVFKGNWVKDWSTRPLYRES 126

Query: 129 DCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           +CPYI PQLTC+ HGRPD  YQ WRW+P  C+LP  N
Sbjct: 127 ECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFN 163

[Close]

BLAST of CmoCh04G001250 vs. Swiss-Prot
Match: TBL35_ARATH (Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTR-PLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKNE 136
           CDVFSG WV D  +  PL+ ES CPY+  QL CQKHGR D  YQ+WRWQPH CNL R N 
Sbjct: 110 CDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNLKRWNA 169

Query: 137 IE 138
           IE
Sbjct: 170 IE 171

[Close]

BLAST of CmoCh04G001250 vs. Swiss-Prot
Match: TBL31_ARATH (Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-17
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 75  EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 134
           E C+VF G WV D V+ PLY E  CPY+  Q TCQ++GRPD  YQ WRW+P  C+LPR N
Sbjct: 65  ESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRFN 124

Query: 135 EIE 138
            ++
Sbjct: 125 ALK 127

[Close]

BLAST of CmoCh04G001250 vs. Swiss-Prot
Match: TBL34_ARATH (Protein trichome birefringence-like 34 OS=Arabidopsis thaliana GN=TBL34 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-16
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           C++F G WV D V+ PLY E DC ++  QL C+K GR D SY++WRWQPH C+LPR N
Sbjct: 59  CNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPRFN 116

[Close]

BLAST of CmoCh04G001250 vs. TrEMBL
Match: A0A0A0KM73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-53
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSIL-RKDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSSS+LRK RFSPYLFTL+ FIFFV++L  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSSLLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDLNPNRPSP 60

Query: 61  ATEKKREKLAFEIGKL-----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGR 120
           ATEKK EKLAF  GKL     EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGR
Sbjct: 61  ATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGR 120

Query: 121 PDRSYQYWRWQPHGCNLPRKN 135
           PDRSYQYWRWQPHGC+LP  N
Sbjct: 121 PDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G001250 vs. TrEMBL
Match: A0A0B0MR54_GOSAR (Putative C7orf58 OS=Gossypium arboreum GN=F383_22042 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 88/136 (64.71%), Postives = 104/136 (76.47%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPPA 60
           MKPP  +SSS++LRK+R SPYLFTL+ FI FVSIL  +D  C+  Q   L+  P  A   
Sbjct: 1   MKPPLSSSSSAVLRKARLSPYLFTLLAFIVFVSILYGEDFMCILGQ---LEPIPGRAMSK 60

Query: 61  TEKKREKLAFEIGK-LEGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSY 120
             K+R KLAF IGK  EGCD+FSG WVRDE+TRPLY+ES+CPYI PQLTCQ+HGRPD+ Y
Sbjct: 61  PVKRRGKLAFAIGKGEEGCDIFSGRWVRDELTRPLYEESECPYIQPQLTCQEHGRPDKDY 120

Query: 121 QYWRWQPHGCNLPRKN 135
           Q WRWQPHGC+LPR N
Sbjct: 121 QKWRWQPHGCDLPRMN 133

[Close]

BLAST of CmoCh04G001250 vs. TrEMBL
Match: M5X002_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 1   MKPPPPNS-SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPPP +S SSS+ RK+R SPYLFTL+ FI FV++L  +DL C+F QQLQL         
Sbjct: 1   MKPPPFSSPSSSVFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSPNSDPLVI 60

Query: 61  ATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRS 120
            T KKREKL F IGK E GCD+FSG WV DE  RPLY+ES+CPYI PQLTCQ+HGRPD+ 
Sbjct: 61  RTGKKREKLPFAIGKSEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQEHGRPDKD 120

Query: 121 YQYWRWQPHGCNLPRKN 135
           YQ WRWQPHGC+LP  N
Sbjct: 121 YQKWRWQPHGCDLPSFN 137

[Close]

BLAST of CmoCh04G001250 vs. TrEMBL
Match: A0A061FKU9_THECC (Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPPA 60
           MKPP P+SSS++LRK+R SPYLFTL+ FI FV+IL  +D  C+F Q   +   P + P  
Sbjct: 20  MKPPLPSSSSAVLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQLEPIPGRPISRPV- 79

Query: 61  TEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSY 120
             KKREKL F +GK E GCD+FSG WVRDE+TRP YDES+CPYI PQLTCQ+HGRPDR Y
Sbjct: 80  --KKREKLPFAVGKTEEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQEHGRPDREY 139

Query: 121 QYWRWQPHGCNLPRKN 135
           Q WRWQPH C+LP  N
Sbjct: 140 QKWRWQPHACDLPSFN 152

[Close]

BLAST of CmoCh04G001250 vs. TrEMBL
Match: A0A0R0LBD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G262100 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 88/138 (63.77%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQ-LDLAPATAPP 60
           MKPP   SSS +  K+R SPYLFTL+VFI FV+IL  +D  C+F QQ Q     P     
Sbjct: 3   MKPPFSPSSSLLRGKARLSPYLFTLIVFILFVAILYGEDFMCIFGQQFQNYSNYPHKLSS 62

Query: 61  ATEK-KREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
            TE+ KR+KL F +GK E GCDVFSGSWVRDE+TRPLY+ES+CPYI PQLTCQ+HGRPD+
Sbjct: 63  TTERVKRQKLPFAVGKAEEGCDVFSGSWVRDELTRPLYEESECPYIQPQLTCQEHGRPDK 122

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQPHGC+LP+ N
Sbjct: 123 DYQHWRWQPHGCDLPKFN 140

[Close]

BLAST of CmoCh04G001250 vs. TAIR10
Match: AT2G40320.1 (AT2G40320.1 TRICHOME BIREFRINGENCE-LIKE 33)

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-43
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1


Query: 1   MKPPPPNS--SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKP  P S  SSSI RK+RFSPYLFTL+ FI FVS+L  +D  C+F Q     + P +  
Sbjct: 1   MKPSSPISLTSSSIARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFVLPPSRT 60

Query: 61  PATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
           P   KK EKLAF IGK E  CDVFSG WVRDEV+RPLY+E +CPYI PQLTCQ+HGRPD+
Sbjct: 61  PEKNKKSEKLAFAIGKTEESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQEHGRPDK 120

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQP+ C+LP  N
Sbjct: 121 DYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G001250 vs. TAIR10
Match: AT3G11030.1 (AT3G11030.1 TRICHOME BIREFRINGENCE-LIKE 32)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-23
Identity = 63/157 (40.13%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 9   SSSILRKSRFSPYLFTLVVFIF---------FVSILRKDL--ACVFSQQLQLDLA----- 68
           S S  RK R + + FT++ FI          F+S  R+ L    +  Q   + +      
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 69  -PATAPPATEKKREKL-------------AFEIGKL-EGCDVFSGSWVRDEVTRPLYDES 128
            P T+PP                      AF +GK  EGCDVF G+WV+D  TRPLY ES
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPEGCDVFKGNWVKDWSTRPLYRES 126

Query: 129 DCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           +CPYI PQLTC+ HGRPD  YQ WRW+P  C+LP  N
Sbjct: 127 ECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFN 163

[Close]

BLAST of CmoCh04G001250 vs. TAIR10
Match: AT5G01620.3 (AT5G01620.3 TRICHOME BIREFRINGENCE-LIKE 35)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTR-PLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKNE 136
           CDVFSG WV D  +  PL+ ES CPY+  QL CQKHGR D  YQ+WRWQPH CNL R N 
Sbjct: 118 CDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNLKRWNA 177

Query: 137 IE 138
           IE
Sbjct: 178 IE 179

[Close]

BLAST of CmoCh04G001250 vs. TAIR10
Match: AT1G73140.1 (AT1G73140.1 Plant protein of unknown function (DUF828))

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 75  EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 134
           E C+VF G WV D V+ PLY E  CPY+  Q TCQ++GRPD  YQ WRW+P  C+LPR N
Sbjct: 65  ESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRFN 124

Query: 135 EIE 138
            ++
Sbjct: 125 ALK 127

[Close]

BLAST of CmoCh04G001250 vs. TAIR10
Match: AT2G38320.1 (AT2G38320.1 TRICHOME BIREFRINGENCE-LIKE 34)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           C++F G WV D V+ PLY E DC ++  QL C+K GR D SY++WRWQPH C+LPR N
Sbjct: 59  CNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPRFN 116

[Close]

BLAST of CmoCh04G001250 vs. NCBI nr
Match: gi|449460876|ref|XP_004148170.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSIL-RKDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSSS+LRK RFSPYLFTL+ FIFFV++L  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSSLLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDLNPNRPSP 60

Query: 61  ATEKKREKLAFEIGKL-----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGR 120
           ATEKK EKLAF  GKL     EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGR
Sbjct: 61  ATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGR 120

Query: 121 PDRSYQYWRWQPHGCNLPRKN 135
           PDRSYQYWRWQPHGC+LP  N
Sbjct: 121 PDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G001250 vs. NCBI nr
Match: gi|659109721|ref|XP_008454841.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 8.7e-53
Identity = 106/140 (75.71%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSS++LRK RFSPYLFTL+ FIFFV+IL  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSALLRKPRFSPYLFTLLAFIFFVAILYGEDLACIFSQQLELDLNPDRPSP 60

Query: 61  ATEKKREKLAFEIGKL----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRP 120
            TEKK EKLAF  GKL    EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGRP
Sbjct: 61  TTEKKWEKLAFAKGKLKEDGEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGRP 120

Query: 121 DRSYQYWRWQPHGCNLPRKN 135
           DRSYQYWRWQPHGC+LP  N
Sbjct: 121 DRSYQYWRWQPHGCDLPSFN 140

[Close]

BLAST of CmoCh04G001250 vs. NCBI nr
Match: gi|658056044|ref|XP_008363773.1| (PREDICTED: protein trichome birefringence-like 33 [Malus domestica])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 1   MKPPPPNSSSS---ILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATA 60
           MKPPP +SSSS   + RK+R SPYLFTL+VFI FV +L  +DL C+F QQLQL  +    
Sbjct: 24  MKPPPLSSSSSAAAVFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTSSSDPI 83

Query: 61  PPATEKKREKLAFEIGKL-EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPD 120
              T KKREKL F +GK  EGCD+FSG WV DE TRPLY+ES+CPYI PQLTCQ+HGRPD
Sbjct: 84  VIRTGKKREKLPFAVGKTDEGCDLFSGRWVFDESTRPLYEESECPYIQPQLTCQEHGRPD 143

Query: 121 RSYQYWRWQPHGCNLPRKN 135
           + YQ WRWQPHGC+LP  N
Sbjct: 144 KDYQKWRWQPHGCDLPSFN 162

[Close]

BLAST of CmoCh04G001250 vs. NCBI nr
Match: gi|694386893|ref|XP_009369217.1| (PREDICTED: protein trichome birefringence-like 33 [Pyrus x bretschneideri])

HSP 1 Score: 179.9 bits (455), Expect = 3.1e-42
Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MKPPPPNSSSS--ILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKPPP +SSS+  I RK+R SPYLFTL+VFI FV +L  +DL C+F QQLQL  +     
Sbjct: 24  MKPPPLSSSSTAAIFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTSSSDPIV 83

Query: 61  PATEKKREKLAFEIGKL-EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
             T KKREKL F +GK  EGCD+FSG WV D+ TRPLY+ES+CPYI PQLTCQ+HGRPD+
Sbjct: 84  IKTGKKREKLPFTVGKTDEGCDLFSGRWVFDQSTRPLYEESECPYIQPQLTCQEHGRPDK 143

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ WRWQPHGC+LP  N
Sbjct: 144 DYQKWRWQPHGCDLPSFN 161

[Close]

BLAST of CmoCh04G001250 vs. NCBI nr
Match: gi|645256140|ref|XP_008233815.1| (PREDICTED: protein trichome birefringence-like 33 [Prunus mume])

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-42
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 1   MKPPP-PNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPPP  +SSSS+ RK+R SPYLFTL+ FI FV++L  +DL C+F QQLQL         
Sbjct: 35  MKPPPFSSSSSSVFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSPNSDPLVI 94

Query: 61  ATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRS 120
            T KKREKL F IGK E GCD+FSG WV DE  RPLY+ES+CPYI PQLTCQ+HGRPD+ 
Sbjct: 95  RTGKKREKLPFAIGKSEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQEHGRPDKD 154

Query: 121 YQYWRWQPHGCNLPRKN 135
           YQ WRWQPHGC+LP  N
Sbjct: 155 YQKWRWQPHGCDLPSFN 171

The following BLAST results are available for this feature:

BLAST of CmoCh04G001250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBL33_ARATH	6.9e-42	62.32	Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=...	[more]
TBL32_ARATH	4.7e-22	40.13	Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=...	[more]
TBL35_ARATH	2.4e-18	64.52	Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=...	[more]
TBL31_ARATH	2.7e-17	55.56	Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=...	[more]
TBL34_ARATH	3.8e-16	56.90	Protein trichome birefringence-like 34 OS=Arabidopsis thaliana GN=TBL34 PE=2 SV=...	[more]

BLAST of CmoCh04G001250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM73_CUCSA	1.2e-53	75.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1	[more]
A0A0B0MR54_GOSAR	2.8e-42	64.71	Putative C7orf58 OS=Gossypium arboreum GN=F383_22042 PE=4 SV=1	[more]
M5X002_PRUPE	6.3e-42	64.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1	[more]
A0A061FKU9_THECC	6.3e-42	63.97	Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 S...	[more]
A0A0R0LBD8_SOYBN	1.4e-41	63.77	Uncharacterized protein OS=Glycine max GN=GLYMA_02G262100 PE=4 SV=1	[more]

BLAST of CmoCh04G001250 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40320.1	3.9e-43	62.32	TRICHOME BIREFRINGENCE-LIKE 33	[more]
AT3G11030.1	2.6e-23	40.13	TRICHOME BIREFRINGENCE-LIKE 32	[more]
AT5G01620.3	1.4e-19	64.52	TRICHOME BIREFRINGENCE-LIKE 35	[more]
AT1G73140.1	1.5e-18	55.56	Plant protein of unknown function (DUF828)	[more]
AT2G38320.1	2.2e-17	56.90	TRICHOME BIREFRINGENCE-LIKE 34	[more]

BLAST of CmoCh04G001250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460876\|ref\|XP_004148170.1\|	1.8e-53	75.89	PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus]	[more]
gi\|659109721\|ref\|XP_008454841.1\|	8.7e-53	75.71	PREDICTED: protein trichome birefringence-like 33 [Cucumis melo]	[more]
gi\|658056044\|ref\|XP_008363773.1\|	1.1e-42	64.75	PREDICTED: protein trichome birefringence-like 33 [Malus domestica]	[more]
gi\|694386893\|ref\|XP_009369217.1\|	3.1e-42	64.49	PREDICTED: protein trichome birefringence-like 33 [Pyrus x bretschneideri]	[more]
gi\|645256140\|ref\|XP_008233815.1\|	4.1e-42	64.96	PREDICTED: protein trichome birefringence-like 33 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025846	PMR5_N_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001250.1	CmoCh04G001250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025846	PMR5 N-terminal domain	PFAM	PF14416	PMR5N	coord: 76..129 score: 4.2
None	No IPR available	PANTHER	PTHR32285:SF62	PROTEIN TRICHOME BIREFRINGENCE-LIKE 33	coord: 8..132 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G001250	CmoCh04G011600	Cucurbita moschata (Rifu)	cmocmoB464

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G001250	Bottle gourd (USVL1VR-Ls)	cmolsiB639
CmoCh04G001250	Bottle gourd (USVL1VR-Ls)	cmolsiB663
CmoCh04G001250	Cucumber (Gy14) v2	cgybcmoB125
CmoCh04G001250	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G001250	Melon (DHL92) v3.6.1	cmomedB722
CmoCh04G001250	Silver-seed gourd	carcmoB0924
CmoCh04G001250	Silver-seed gourd	carcmoB1219
CmoCh04G001250	Cucumber (Chinese Long) v3	cmocucB0806
CmoCh04G001250	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G001250	Watermelon (97103) v2	cmowmbB721
CmoCh04G001250	Watermelon (97103) v2	cmowmbB755
CmoCh04G001250	Wax gourd	cmowgoB0884
CmoCh04G001250	Wax gourd	cmowgoB0889
CmoCh04G001250	Cucurbita moschata (Rifu)	cmocmoB187
CmoCh04G001250	Cucumber (Gy14) v1	cgycmoB0401
CmoCh04G001250	Cucurbita maxima (Rimu)	cmacmoB239
CmoCh04G001250	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G001250	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G001250	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G001250	Wild cucumber (PI 183967)	cmocpiB692
CmoCh04G001250	Cucumber (Chinese Long) v2	cmocuB678
CmoCh04G001250	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G001250	Melon (DHL92) v3.5.1	cmomeB635
CmoCh04G001250	Melon (DHL92) v3.5.1	cmomeB661
CmoCh04G001250	Watermelon (Charleston Gray)	cmowcgB649
CmoCh04G001250	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G001250	Watermelon (97103) v1	cmowmB669
CmoCh04G001250	Watermelon (97103) v1	cmowmB685
CmoCh04G001250	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G001250	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G001250	Cucurbita pepo (Zucchini)	cmocpeB695