CmoCh04G001250.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001250.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	TRICHOME BIREFRINGENCE-LIKE 33
Location	Cmo_Chr04 : 641972 .. 642924 (-)
Sequence length	420

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGGTGAGTTCTTATCCCTTTTACTTTCCATTGAGAATTAATATACCGTAACTTAAAAGCTTCAAAGCCTTCGGATTTAGTTGCAATGACTTTAGAGTTGGAGGTCTTCTTATTAATATTGGATAGTCGCATTTGTTTTATGGTTCTATGGTAGTTTCCATGTACTTAAGCTTCAACGTGATATTAAACCCATAATGATTGAAATCCATAAATTTTAAGTAATTTGATCCTGGTTTGATTTGTGGGTGTGGAGTGGTTAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGGTATCCCTTTTCTCTCTCTGCTTTTTCTTTTTTGTTTGATTTTATTTTCTACCTTTCATTTTCCATCTATGTAGATAAAACGGTTGTTGAAATTTAACTTAATCCCCAAAAAGAAAGGAAATATATATATATATAATATTATTTCTAATGCTTTAAAAATTTTAATTTTAATCCCTTTTAATTTTGGGCATTTAATTTTTTTAATAGGAAGGTCATTTTCCATGCATACATCTTACCTAAGTTAGCATCAAAATTGTTTGTTTTTTTTTAAGCTAGAAAGAATGAAATAGAAAATAAATAA

mRNA sequence

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGAAAGAATGAAATAGAAAATAAATAA

Coding sequence (CDS)

ATGAAGCCTCCTCCTCCCAACTCTTCCTCCTCCATCCTCAGGAAATCTCGCTTCTCCCCATACCTCTTCACTCTCGTGGTCTTCATCTTCTTCGTCTCCATCCTTCGTAAAGACCTTGCCTGTGTCTTCAGCCAGCAACTCCAGCTCGACCTCGCCCCTGCCACTGCTCCGCCCGCCACAGAGAAGAAAAGGGAGAAATTGGCATTTGAGATAGGAAAATTGGAGGGGTGTGACGTGTTCAGTGGGAGCTGGGTTAGGGACGAGGTGACTCGGCCGCTATATGATGAGTCGGATTGTCCGTACATTCCGCCGCAGCTGACGTGTCAGAAGCACGGCCGGCCGGACCGGAGTTATCAGTACTGGCGGTGGCAGCCCCACGGCTGCAATCTTCCCAGAAAGAATGAAATAGAAAATAAATAA

Homology

[Close]

BLAST of CmoCh04G001250.1 vs. Swiss-Prot
Match: TBL33_ARATH (Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.9e-42
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1


Query: 1   MKPPPPNS--SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKP  P S  SSSI RK+RFSPYLFTL+ FI FVS+L  +D  C+F Q     + P +  
Sbjct: 1   MKPSSPISLTSSSIARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFVLPPSRT 60

Query: 61  PATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
           P   KK EKLAF IGK E  CDVFSG WVRDEV+RPLY+E +CPYI PQLTCQ+HGRPD+
Sbjct: 61  PEKNKKSEKLAFAIGKTEESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQEHGRPDK 120

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQP+ C+LP  N
Sbjct: 121 DYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G001250.1 vs. Swiss-Prot
Match: TBL32_ARATH (Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-22
Identity = 63/157 (40.13%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 9   SSSILRKSRFSPYLFTLVVFIF---------FVSILRKDL--ACVFSQQLQLDLA----- 68
           S S  RK R + + FT++ FI          F+S  R+ L    +  Q   + +      
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 69  -PATAPPATEKKREKL-------------AFEIGKL-EGCDVFSGSWVRDEVTRPLYDES 128
            P T+PP                      AF +GK  EGCDVF G+WV+D  TRPLY ES
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPEGCDVFKGNWVKDWSTRPLYRES 126

Query: 129 DCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           +CPYI PQLTC+ HGRPD  YQ WRW+P  C+LP  N
Sbjct: 127 ECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFN 163

[Close]

BLAST of CmoCh04G001250.1 vs. Swiss-Prot
Match: TBL35_ARATH (Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.4e-18
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTR-PLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKNE 136
           CDVFSG WV D  +  PL+ ES CPY+  QL CQKHGR D  YQ+WRWQPH CNL R N 
Sbjct: 110 CDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNLKRWNA 169

Query: 137 IE 138
           IE
Sbjct: 170 IE 171

[Close]

BLAST of CmoCh04G001250.1 vs. Swiss-Prot
Match: TBL31_ARATH (Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-17
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 75  EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 134
           E C+VF G WV D V+ PLY E  CPY+  Q TCQ++GRPD  YQ WRW+P  C+LPR N
Sbjct: 65  ESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRFN 124

Query: 135 EIE 138
            ++
Sbjct: 125 ALK 127

[Close]

BLAST of CmoCh04G001250.1 vs. Swiss-Prot
Match: TBL34_ARATH (Protein trichome birefringence-like 34 OS=Arabidopsis thaliana GN=TBL34 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.8e-16
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           C++F G WV D V+ PLY E DC ++  QL C+K GR D SY++WRWQPH C+LPR N
Sbjct: 59  CNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPRFN 116

[Close]

BLAST of CmoCh04G001250.1 vs. TrEMBL
Match: A0A0A0KM73_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.2e-53
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSIL-RKDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSSS+LRK RFSPYLFTL+ FIFFV++L  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSSLLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDLNPNRPSP 60

Query: 61  ATEKKREKLAFEIGKL-----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGR 120
           ATEKK EKLAF  GKL     EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGR
Sbjct: 61  ATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGR 120

Query: 121 PDRSYQYWRWQPHGCNLPRKN 135
           PDRSYQYWRWQPHGC+LP  N
Sbjct: 121 PDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G001250.1 vs. TrEMBL
Match: A0A0B0MR54_GOSAR (Putative C7orf58 OS=Gossypium arboreum GN=F383_22042 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 2.8e-42
Identity = 88/136 (64.71%), Postives = 104/136 (76.47%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPPA 60
           MKPP  +SSS++LRK+R SPYLFTL+ FI FVSIL  +D  C+  Q   L+  P  A   
Sbjct: 1   MKPPLSSSSSAVLRKARLSPYLFTLLAFIVFVSILYGEDFMCILGQ---LEPIPGRAMSK 60

Query: 61  TEKKREKLAFEIGK-LEGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSY 120
             K+R KLAF IGK  EGCD+FSG WVRDE+TRPLY+ES+CPYI PQLTCQ+HGRPD+ Y
Sbjct: 61  PVKRRGKLAFAIGKGEEGCDIFSGRWVRDELTRPLYEESECPYIQPQLTCQEHGRPDKDY 120

Query: 121 QYWRWQPHGCNLPRKN 135
           Q WRWQPHGC+LPR N
Sbjct: 121 QKWRWQPHGCDLPRMN 133

[Close]

BLAST of CmoCh04G001250.1 vs. TrEMBL
Match: M5X002_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 1   MKPPPPNS-SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPPP +S SSS+ RK+R SPYLFTL+ FI FV++L  +DL C+F QQLQL         
Sbjct: 1   MKPPPFSSPSSSVFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSPNSDPLVI 60

Query: 61  ATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRS 120
            T KKREKL F IGK E GCD+FSG WV DE  RPLY+ES+CPYI PQLTCQ+HGRPD+ 
Sbjct: 61  RTGKKREKLPFAIGKSEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQEHGRPDKD 120

Query: 121 YQYWRWQPHGCNLPRKN 135
           YQ WRWQPHGC+LP  N
Sbjct: 121 YQKWRWQPHGCDLPSFN 137

[Close]

BLAST of CmoCh04G001250.1 vs. TrEMBL
Match: A0A061FKU9_THECC (Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 6.3e-42
Identity = 87/136 (63.97%), Postives = 103/136 (75.74%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPPA 60
           MKPP P+SSS++LRK+R SPYLFTL+ FI FV+IL  +D  C+F Q   +   P + P  
Sbjct: 20  MKPPLPSSSSAVLRKARLSPYLFTLLAFIVFVAILYGEDFMCIFGQLEPIPGRPISRPV- 79

Query: 61  TEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSY 120
             KKREKL F +GK E GCD+FSG WVRDE+TRP YDES+CPYI PQLTCQ+HGRPDR Y
Sbjct: 80  --KKREKLPFAVGKTEEGCDMFSGRWVRDELTRPHYDESECPYIQPQLTCQEHGRPDREY 139

Query: 121 QYWRWQPHGCNLPRKN 135
           Q WRWQPH C+LP  N
Sbjct: 140 QKWRWQPHACDLPSFN 152

[Close]

BLAST of CmoCh04G001250.1 vs. TrEMBL
Match: A0A0R0LBD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G262100 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.4e-41
Identity = 88/138 (63.77%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MKPPPPNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQ-LDLAPATAPP 60
           MKPP   SSS +  K+R SPYLFTL+VFI FV+IL  +D  C+F QQ Q     P     
Sbjct: 3   MKPPFSPSSSLLRGKARLSPYLFTLIVFILFVAILYGEDFMCIFGQQFQNYSNYPHKLSS 62

Query: 61  ATEK-KREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
            TE+ KR+KL F +GK E GCDVFSGSWVRDE+TRPLY+ES+CPYI PQLTCQ+HGRPD+
Sbjct: 63  TTERVKRQKLPFAVGKAEEGCDVFSGSWVRDELTRPLYEESECPYIQPQLTCQEHGRPDK 122

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQPHGC+LP+ N
Sbjct: 123 DYQHWRWQPHGCDLPKFN 140

[Close]

BLAST of CmoCh04G001250.1 vs. TAIR10
Match: AT2G40320.1 (AT2G40320.1 TRICHOME BIREFRINGENCE-LIKE 33)

HSP 1 Score: 171.4 bits (433), Expect = 3.9e-43
Identity = 86/138 (62.32%), Postives = 101/138 (73.19%), Query Frame = 1


Query: 1   MKPPPPNS--SSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKP  P S  SSSI RK+RFSPYLFTL+ FI FVS+L  +D  C+F Q     + P +  
Sbjct: 1   MKPSSPISLTSSSIARKARFSPYLFTLLAFILFVSVLYGEDFMCIFGQLEPNFVLPPSRT 60

Query: 61  PATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
           P   KK EKLAF IGK E  CDVFSG WVRDEV+RPLY+E +CPYI PQLTCQ+HGRPD+
Sbjct: 61  PEKNKKSEKLAFAIGKTEESCDVFSGKWVRDEVSRPLYEEWECPYIQPQLTCQEHGRPDK 120

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ+WRWQP+ C+LP  N
Sbjct: 121 DYQFWRWQPNHCDLPSFN 138

[Close]

BLAST of CmoCh04G001250.1 vs. TAIR10
Match: AT3G11030.1 (AT3G11030.1 TRICHOME BIREFRINGENCE-LIKE 32)

HSP 1 Score: 105.5 bits (262), Expect = 2.6e-23
Identity = 63/157 (40.13%), Postives = 80/157 (50.96%), Query Frame = 1


Query: 9   SSSILRKSRFSPYLFTLVVFIF---------FVSILRKDL--ACVFSQQLQLDLA----- 68
           S S  RK R + + FT++ FI          F+S  R+ L    +  Q   + +      
Sbjct: 7   SPSNRRKRRLTHFFFTVLAFILLAAFIYGHDFISFSRRSLHSPTIVHQSAIVVVVDEPPP 66

Query: 69  -PATAPPATEKKREKL-------------AFEIGKL-EGCDVFSGSWVRDEVTRPLYDES 128
            P T+PP                      AF +GK  EGCDVF G+WV+D  TRPLY ES
Sbjct: 67  PPPTSPPPPSPPPPSPPPPSPPPPSPPPPAFAVGKTPEGCDVFKGNWVKDWSTRPLYRES 126

Query: 129 DCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           +CPYI PQLTC+ HGRPD  YQ WRW+P  C+LP  N
Sbjct: 127 ECPYIQPQLTCRTHGRPDSDYQSWRWRPDSCSLPSFN 163

[Close]

BLAST of CmoCh04G001250.1 vs. TAIR10
Match: AT5G01620.3 (AT5G01620.3 TRICHOME BIREFRINGENCE-LIKE 35)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 40/62 (64.52%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTR-PLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKNE 136
           CDVFSG WV D  +  PL+ ES CPY+  QL CQKHGR D  YQ+WRWQPH CNL R N 
Sbjct: 118 CDVFSGKWVFDNSSSYPLHKESQCPYMSDQLACQKHGRKDLEYQHWRWQPHACNLKRWNA 177

Query: 137 IE 138
           IE
Sbjct: 178 IE 179

[Close]

BLAST of CmoCh04G001250.1 vs. TAIR10
Match: AT1G73140.1 (AT1G73140.1 Plant protein of unknown function (DUF828))

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1


Query: 75  EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 134
           E C+VF G WV D V+ PLY E  CPY+  Q TCQ++GRPD  YQ WRW+P  C+LPR N
Sbjct: 65  ESCNVFEGQWVWDNVSYPLYTEKSCPYLVKQTTCQRNGRPDSYYQNWRWKPSSCDLPRFN 124

Query: 135 EIE 138
            ++
Sbjct: 125 ALK 127

[Close]

BLAST of CmoCh04G001250.1 vs. TAIR10
Match: AT2G38320.1 (AT2G38320.1 TRICHOME BIREFRINGENCE-LIKE 34)

HSP 1 Score: 85.9 bits (211), Expect = 2.2e-17
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 1


Query: 77  CDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRSYQYWRWQPHGCNLPRKN 135
           C++F G WV D V+ PLY E DC ++  QL C+K GR D SY++WRWQPH C+LPR N
Sbjct: 59  CNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLPRFN 116

[Close]

BLAST of CmoCh04G001250.1 vs. NCBI nr
Match: gi|449460876|ref|XP_004148170.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 107/141 (75.89%), Postives = 118/141 (83.69%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSIL-RKDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSSS+LRK RFSPYLFTL+ FIFFV++L  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSSLLRKPRFSPYLFTLLAFIFFVAVLYSEDLACIFSQQLELDLNPNRPSP 60

Query: 61  ATEKKREKLAFEIGKL-----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGR 120
           ATEKK EKLAF  GKL     EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGR
Sbjct: 61  ATEKKWEKLAFAKGKLKEEEEEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGR 120

Query: 121 PDRSYQYWRWQPHGCNLPRKN 135
           PDRSYQYWRWQPHGC+LP  N
Sbjct: 121 PDRSYQYWRWQPHGCDLPSFN 141

[Close]

BLAST of CmoCh04G001250.1 vs. NCBI nr
Match: gi|659109721|ref|XP_008454841.1| (PREDICTED: protein trichome birefringence-like 33 [Cucumis melo])

HSP 1 Score: 214.9 bits (546), Expect = 8.7e-53
Identity = 106/140 (75.71%), Postives = 117/140 (83.57%), Query Frame = 1


Query: 1   MKPPPP-NSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPP P +SSS++LRK RFSPYLFTL+ FIFFV+IL  +DLAC+FSQQL+LDL P    P
Sbjct: 1   MKPPSPISSSSALLRKPRFSPYLFTLLAFIFFVAILYGEDLACIFSQQLELDLNPDRPSP 60

Query: 61  ATEKKREKLAFEIGKL----EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRP 120
            TEKK EKLAF  GKL    EGCDV+SG WVRDEVTRPLYDESDCPYI PQLTCQ+HGRP
Sbjct: 61  TTEKKWEKLAFAKGKLKEDGEGCDVYSGKWVRDEVTRPLYDESDCPYIQPQLTCQEHGRP 120

Query: 121 DRSYQYWRWQPHGCNLPRKN 135
           DRSYQYWRWQPHGC+LP  N
Sbjct: 121 DRSYQYWRWQPHGCDLPSFN 140

[Close]

BLAST of CmoCh04G001250.1 vs. NCBI nr
Match: gi|658056044|ref|XP_008363773.1| (PREDICTED: protein trichome birefringence-like 33 [Malus domestica])

HSP 1 Score: 181.4 bits (459), Expect = 1.1e-42
Identity = 90/139 (64.75%), Postives = 105/139 (75.54%), Query Frame = 1


Query: 1   MKPPPPNSSSS---ILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATA 60
           MKPPP +SSSS   + RK+R SPYLFTL+VFI FV +L  +DL C+F QQLQL  +    
Sbjct: 24  MKPPPLSSSSSAAAVFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTSSSDPI 83

Query: 61  PPATEKKREKLAFEIGKL-EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPD 120
              T KKREKL F +GK  EGCD+FSG WV DE TRPLY+ES+CPYI PQLTCQ+HGRPD
Sbjct: 84  VIRTGKKREKLPFAVGKTDEGCDLFSGRWVFDESTRPLYEESECPYIQPQLTCQEHGRPD 143

Query: 121 RSYQYWRWQPHGCNLPRKN 135
           + YQ WRWQPHGC+LP  N
Sbjct: 144 KDYQKWRWQPHGCDLPSFN 162

[Close]

BLAST of CmoCh04G001250.1 vs. NCBI nr
Match: gi|694386893|ref|XP_009369217.1| (PREDICTED: protein trichome birefringence-like 33 [Pyrus x bretschneideri])

HSP 1 Score: 179.9 bits (455), Expect = 3.1e-42
Identity = 89/138 (64.49%), Postives = 105/138 (76.09%), Query Frame = 1


Query: 1   MKPPPPNSSSS--ILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAP 60
           MKPPP +SSS+  I RK+R SPYLFTL+VFI FV +L  +DL C+F QQLQL  +     
Sbjct: 24  MKPPPLSSSSTAAIFRKARLSPYLFTLLVFILFVCVLYGEDLTCIFGQQLQLTSSSDPIV 83

Query: 61  PATEKKREKLAFEIGKL-EGCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDR 120
             T KKREKL F +GK  EGCD+FSG WV D+ TRPLY+ES+CPYI PQLTCQ+HGRPD+
Sbjct: 84  IKTGKKREKLPFTVGKTDEGCDLFSGRWVFDQSTRPLYEESECPYIQPQLTCQEHGRPDK 143

Query: 121 SYQYWRWQPHGCNLPRKN 135
            YQ WRWQPHGC+LP  N
Sbjct: 144 DYQKWRWQPHGCDLPSFN 161

[Close]

BLAST of CmoCh04G001250.1 vs. NCBI nr
Match: gi|645256140|ref|XP_008233815.1| (PREDICTED: protein trichome birefringence-like 33 [Prunus mume])

HSP 1 Score: 179.5 bits (454), Expect = 4.1e-42
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 1


Query: 1   MKPPP-PNSSSSILRKSRFSPYLFTLVVFIFFVSILR-KDLACVFSQQLQLDLAPATAPP 60
           MKPPP  +SSSS+ RK+R SPYLFTL+ FI FV++L  +DL C+F QQLQL         
Sbjct: 35  MKPPPFSSSSSSVFRKARLSPYLFTLLAFILFVAVLYGEDLMCIFGQQLQLSPNSDPLVI 94

Query: 61  ATEKKREKLAFEIGKLE-GCDVFSGSWVRDEVTRPLYDESDCPYIPPQLTCQKHGRPDRS 120
            T KKREKL F IGK E GCD+FSG WV DE  RPLY+ES+CPYI PQLTCQ+HGRPD+ 
Sbjct: 95  RTGKKREKLPFAIGKSEEGCDIFSGRWVWDESNRPLYEESECPYIQPQLTCQEHGRPDKD 154

Query: 121 YQYWRWQPHGCNLPRKN 135
           YQ WRWQPHGC+LP  N
Sbjct: 155 YQKWRWQPHGCDLPSFN 171

The following BLAST results are available for this feature:

BLAST of CmoCh04G001250.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TBL33_ARATH	6.9e-42	62.32	Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=...	[more]
TBL32_ARATH	4.7e-22	40.13	Protein trichome birefringence-like 32 OS=Arabidopsis thaliana GN=TBL32 PE=2 SV=...	[more]
TBL35_ARATH	2.4e-18	64.52	Protein trichome birefringence-like 35 OS=Arabidopsis thaliana GN=TBL35 PE=2 SV=...	[more]
TBL31_ARATH	2.7e-17	55.56	Protein trichome birefringence-like 31 OS=Arabidopsis thaliana GN=TBL31 PE=2 SV=...	[more]
TBL34_ARATH	3.8e-16	56.90	Protein trichome birefringence-like 34 OS=Arabidopsis thaliana GN=TBL34 PE=2 SV=...	[more]

BLAST of CmoCh04G001250.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM73_CUCSA	1.2e-53	75.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G217170 PE=4 SV=1	[more]
A0A0B0MR54_GOSAR	2.8e-42	64.71	Putative C7orf58 OS=Gossypium arboreum GN=F383_22042 PE=4 SV=1	[more]
M5X002_PRUPE	6.3e-42	64.96	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006124mg PE=4 SV=1	[more]
A0A061FKU9_THECC	6.3e-42	63.97	Trichome birefringence-like 33 isoform 1 OS=Theobroma cacao GN=TCM_042434 PE=4 S...	[more]
A0A0R0LBD8_SOYBN	1.4e-41	63.77	Uncharacterized protein OS=Glycine max GN=GLYMA_02G262100 PE=4 SV=1	[more]

BLAST of CmoCh04G001250.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40320.1	3.9e-43	62.32	TRICHOME BIREFRINGENCE-LIKE 33	[more]
AT3G11030.1	2.6e-23	40.13	TRICHOME BIREFRINGENCE-LIKE 32	[more]
AT5G01620.3	1.4e-19	64.52	TRICHOME BIREFRINGENCE-LIKE 35	[more]
AT1G73140.1	1.5e-18	55.56	Plant protein of unknown function (DUF828)	[more]
AT2G38320.1	2.2e-17	56.90	TRICHOME BIREFRINGENCE-LIKE 34	[more]

BLAST of CmoCh04G001250.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460876\|ref\|XP_004148170.1\|	1.8e-53	75.89	PREDICTED: protein trichome birefringence-like 33 [Cucumis sativus]	[more]
gi\|659109721\|ref\|XP_008454841.1\|	8.7e-53	75.71	PREDICTED: protein trichome birefringence-like 33 [Cucumis melo]	[more]
gi\|658056044\|ref\|XP_008363773.1\|	1.1e-42	64.75	PREDICTED: protein trichome birefringence-like 33 [Malus domestica]	[more]
gi\|694386893\|ref\|XP_009369217.1\|	3.1e-42	64.49	PREDICTED: protein trichome birefringence-like 33 [Pyrus x bretschneideri]	[more]
gi\|645256140\|ref\|XP_008233815.1\|	4.1e-42	64.96	PREDICTED: protein trichome birefringence-like 33 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025846	PMR5_N_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G001250	CmoCh04G001250	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001250.1	CmoCh04G001250.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001250.1.CDS.3	CmoCh04G001250.1.CDS.3	CDS
CmoCh04G001250.1.CDS.2	CmoCh04G001250.1.CDS.2	CDS
CmoCh04G001250.1.CDS.1	CmoCh04G001250.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G001250.1.exon.3	CmoCh04G001250.1.exon.3	exon
CmoCh04G001250.1.exon.2	CmoCh04G001250.1.exon.2	exon
CmoCh04G001250.1.exon.1	CmoCh04G001250.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025846	PMR5 N-terminal domain	PFAM	PF14416	PMR5N	coord: 76..129 score: 4.2
None	No IPR available	PANTHER	PTHR32285:SF62	PROTEIN TRICHOME BIREFRINGENCE-LIKE 33	coord: 8..132 score: 3.9