CmoCh04G009820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	U3 small nucleolar RNA-associated protein 14 B isoform 1
Location	Cmo_Chr04 : 4974744 .. 4975422 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGCGGGAGCCACCGGATAATGGCGGCGGCGGCGGAGACGATGGGGCAACCACGAGGCTTCTGGGTAATATTGCTTTGGCTGTTGGGTTAACTTACCTTTCGGTTACAGGGCAGCTTGGCTGGGTTTTGGACACCGTTGTTTCCACTTGGGTATGTATTCTTTACGTATCGCACCACTTCTTTCTATTTGGAAAATGGGTGGAACCTGGTTCATTTGGTGCTCCTCGCTTCTAGTTTTACTGATTATTGGGACTAACCTGCTTGCATTCCAGAACTGATTGAAGATGATTTCCTTTGTCACCTGCTTGAAATTTGGTTTCATCTGTTAACATCTATGCCTGTTCATGTTCAACCCACTGTAAGCCTTTATATCTTCTTCCTGTTCAATCTTAAATCTTCAGCTCTGTTTTTATTTGCAGTGCCCTAACTGTGAAATGAATTTCAAATCTACAACTAAGTTGTTGTCTTGAAAGAACTGGTAAACCCCATCTTGATTACCCAAGCGTATTATGAGTCGATAAAGAAATGATTGAATACATATTAGGAGACGAAACCAAATGAGTATCCAAACATCATTAGAGACTAAAACACATATTTAGCCTCATTATTATTATGAAATAGAATTCAACAATCACTTCAAATGAATGAAAAATATATACAAGTAGATGTGTAG

mRNA sequence

ATGGACCAGCGGGAGCCACCGGATAATGGCGGCGGCGGCGGAGACGATGGGGCAACCACGAGGCTTCTGGGTAATATTGCTTTGGCTGTTGGGTTAACTTACCTTTCGGTTACAGGGCAGCTTGGCTGGGTTTTGGACACCGTTGTTTCCACTTGGGTATAACTGATTGAAGATGATTTCCTTTGTCACCTGCTTGAAATTTGGTTTCATCTGTTAACATCTATGCCTGTTCATGTTCAACCCACTTGCCCTAACTGTGAAATGAATTTCAAATCTACAACTAAAATTCAACAATCACTTCAAATGAATGAAAAATATATACAAGTAGATGTGTAG

Coding sequence (CDS)

ATGGACCAGCGGGAGCCACCGGATAATGGCGGCGGCGGCGGAGACGATGGGGCAACCACGAGGCTTCTGGGTAATATTGCTTTGGCTGTTGGGTTAACTTACCTTTCGGTTACAGGGCAGCTTGGCTGGGTTTTGGACACCGTTGTTTCCACTTGGGTATAA

Homology

[Close]

BLAST of CmoCh04G009820 vs. TrEMBL
Match: V7BUK8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G086500g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.6e-12
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 8   DNGGGGGDDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           D GGGG DDGAT RLLGNIALA+GLTYLSVTGQLGW+LD +VS W+
Sbjct: 99  DGGGGGRDDGATARLLGNIALAIGLTYLSVTGQLGWILDAIVSIWL 144

[Close]

BLAST of CmoCh04G009820 vs. TrEMBL
Match: A0A0S3SI87_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G124000 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.8e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 92  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 137

[Close]

BLAST of CmoCh04G009820 vs. TrEMBL
Match: A0A0L9ULL6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g125300 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 5.8e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 92  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 137

[Close]

BLAST of CmoCh04G009820 vs. TrEMBL
Match: A0A0A0L5A4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099750 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-11
Identity = 36/45 (80.00%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 9   NGGGGGDDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           +GG GGDDGAT RL+GNIALA GLTYLSVTGQLGWVLD +VS W+
Sbjct: 95  DGGDGGDDGATARLVGNIALAAGLTYLSVTGQLGWVLDAIVSIWL 139

[Close]

BLAST of CmoCh04G009820 vs. TrEMBL
Match: A0A151RBB6_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038719 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.9e-11
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT R+LGN+ALA+GLTYLS+TGQLGW+LD +VS W+
Sbjct: 92  NGGGGGRDDGATARMLGNLALAIGLTYLSMTGQLGWILDAIVSIWI 137

[Close]

BLAST of CmoCh04G009820 vs. TAIR10
Match: AT4G27390.1 (AT4G27390.1 unknown protein)

HSP 1 Score: 63.5 bits (153), Expect = 4.4e-11
Identity = 27/41 (65.85%), Postives = 35/41 (85.37%), Query Frame = 1


Query: 13  GGDDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           GGD+    R+LGN+ALA+GLTYLS+TGQLGW+LD +VS W+
Sbjct: 88  GGDNNGNGRILGNLALAIGLTYLSMTGQLGWILDAIVSVWL 128

[Close]

BLAST of CmoCh04G009820 vs. NCBI nr
Match: gi|593698334|ref|XP_007149640.1| (hypothetical protein PHAVU_005G086500g [Phaseolus vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 3.7e-12
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1


Query: 8   DNGGGGGDDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           D GGGG DDGAT RLLGNIALA+GLTYLSVTGQLGW+LD +VS W+
Sbjct: 99  DGGGGGRDDGATARLLGNIALAIGLTYLSVTGQLGWILDAIVSIWL 144

[Close]

BLAST of CmoCh04G009820 vs. NCBI nr
Match: gi|951072947|ref|XP_014491961.1| (PREDICTED: uncharacterized protein LOC106754462 isoform X1 [Vigna radiata var. radiata])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 95  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 140

[Close]

BLAST of CmoCh04G009820 vs. NCBI nr
Match: gi|920700423|gb|KOM43648.1| (hypothetical protein LR48_Vigan05g125300 [Vigna angularis])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 92  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 137

[Close]

BLAST of CmoCh04G009820 vs. NCBI nr
Match: gi|951072949|ref|XP_014491964.1| (PREDICTED: uncharacterized protein LOC106754462 isoform X2 [Vigna radiata var. radiata])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 95  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 140

[Close]

BLAST of CmoCh04G009820 vs. NCBI nr
Match: gi|965605331|dbj|BAT92507.1| (hypothetical protein VIGAN_07124000 [Vigna angularis var. angularis])

HSP 1 Score: 77.4 bits (189), Expect = 8.3e-12
Identity = 39/46 (84.78%), Postives = 42/46 (91.30%), Query Frame = 1


Query: 9   NGGGGG-DDGATTRLLGNIALAVGLTYLSVTGQLGWVLDTVVSTWV 54
           NGGGGG DDGAT RLLGNIALAVGLTYLSVTGQLGW+LD +VS W+
Sbjct: 92  NGGGGGRDDGATARLLGNIALAVGLTYLSVTGQLGWILDAIVSIWL 137

The following BLAST results are available for this feature:

BLAST of CmoCh04G009820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009820 vs. TrEMBL


Match Name	E-value	Identity	Description
V7BUK8_PHAVU	2.6e-12	80.43	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_005G086500g PE=4 SV=1	[more]
A0A0S3SI87_PHAAN	5.8e-12	84.78	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.07G124000 PE=...	[more]
A0A0L9ULL6_PHAAN	5.8e-12	84.78	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan05g125300 PE=4 SV=1	[more]
A0A0A0L5A4_CUCSA	2.9e-11	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G099750 PE=4 SV=1	[more]
A0A151RBB6_CAJCA	2.9e-11	76.09	Uncharacterized protein OS=Cajanus cajan GN=KK1_038719 PE=4 SV=1	[more]

BLAST of CmoCh04G009820 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27390.1	4.4e-11	65.85	unknown protein	[more]

BLAST of CmoCh04G009820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|593698334\|ref\|XP_007149640.1\|	3.7e-12	80.43	hypothetical protein PHAVU_005G086500g [Phaseolus vulgaris]	[more]
gi\|951072947\|ref\|XP_014491961.1\|	8.3e-12	84.78	PREDICTED: uncharacterized protein LOC106754462 isoform X1 [Vigna radiata var. r...	[more]
gi\|920700423\|gb\|KOM43648.1\|	8.3e-12	84.78	hypothetical protein LR48_Vigan05g125300 [Vigna angularis]	[more]
gi\|951072949\|ref\|XP_014491964.1\|	8.3e-12	84.78	PREDICTED: uncharacterized protein LOC106754462 isoform X2 [Vigna radiata var. r...	[more]
gi\|965605331\|dbj\|BAT92507.1\|	8.3e-12	84.78	hypothetical protein VIGAN_07124000 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009820.1	CmoCh04G009820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36785	FAMILY NOT NAMED	coord: 10..52 score: 4.7
None	No IPR available	PANTHER	PTHR36785:SF1	SUBFAMILY NOT NAMED	coord: 10..52 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009820	Cucsa.074530	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009820	CmaCh16G008020	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009820	CmaCh04G009140	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009820	Cla011754	Watermelon (97103) v1	cmowmB674
CmoCh04G009820	Csa3G099750	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009820	MELO3C016549	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009820	ClCG10G006570	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009820	CSPI03G05920	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009820	Lsi05G006930	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009820	Cp4.1LG14g00200	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009820	MELO3C016549.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009820	CsaV3_3G006020	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009820	Cla97C10G190510	Watermelon (97103) v2	cmowmbB689
CmoCh04G009820	CsGy3G006030	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009820	Carg24070	Silver-seed gourd	carcmoB0305

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G009820	CmoCh16G008590	Cucurbita moschata (Rifu)	cmocmoB285

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009820	Bottle gourd (USVL1VR-Ls)	cmolsiB678
CmoCh04G009820	Silver-seed gourd	carcmoB0923