Carg24070 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24070
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	U3 small nucleolar RNA-associated protein 14 B isoform 3
Location	Cucurbita_argyrosperma_scaffold_217 : 81252 .. 83365 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCACTCTCACACCAGATAATCCATCATGAATTTCTTCTTCTCTGCTTCCTCATATTCCCTTTAATCCCAAATGACAAGTTTCATCAGATTCTCTTCCTTCAACCTACTACACGACAATTTCTACACAAAACCCACCCGATTTAATCCTCTTCCGCCCCCGAAGGTTGCCTCCTGCCACCGAAATGGGTTCCGGTTGAGGCTTTGTCGAGGGAAGTTGCCGTTTCTTAGCGGGGGTTGGGGTAACAATGGGGTTTCGGGAAAATACGGAGTGTTTAAGGGAAAGAGAGGGCTAATTGTAGCAAGGTTTAATCAGGGTTTTGGGTTTAACGGCGGCGGAAGCGGCGGCGGCGGCGGAGACGATGGTGCAACCGCGAGGCTTCTGGGTAATATCGCTTTGGCTGCTGGGTTAACTTACCTTTCAGTAACAGGGCAGCTTGGCTGGATTTTAGATGCGATCGTTTCCATTTGGGTCTGTATTCATCTTCTCCCTTCTCTTGTTTTGATTCTCAAATATCGAATGAGTTTTGATTCTCAAGGATTTGGGAATTTCTTAACCTTCTCATAGAAACATTGGTTATTTCCTTTAGTGTTCGTCTGTTCGGCTCTTATTAGGACTTGTCCGTGTGATGAAAGGGCAGCTCTTCGTTCACTATTATCTTAATACTTCACTGAAGAGTAGTAATAGGAGCATGTTTATGGCTGGCTTTTGCTATCTCTGCCTTTGAAAACTGATTTCTAATGGGAAAAACATTAAGTTTGTATTGAATTCTCATTTGTTTGCATTCCAGAACTTATTGAAGATGAATTCTTCTTCTTTTGCATTCTTGTGCTTTGCTTTGATCTGTTAACATATATGCATATTCAGCTTGTTGCAGTTCTTGTACCAATTGTTGGAGTGGCCGCTTTTATATGGTGGGCAGGACGAGATATTGTTCAAAGCACTGTAAGTCTGTTATAACTTTTGTATTTTCAATCTCAAAGCTTGAGCTTATGCAACTTCATACGCACCTTCATATGCAACACCTTATTGCAATTGCAGTGTCCTAACTGTGGAAATGAATTCCAAATATTCAAGTAAGTGTTCTTTAACACTTAAAGAACTTAATATAAGTTCGGCCTCGTTCGAGATCCCTCGATTCGTTTCGTGCAATTTTCAGCTGTATTAACTAACACACTTCTTTTACTTCCATATTGCAGATCAACTCTGAATGAAGAACTGCAACTATGCCCTTTCTGTAGCCAACCTTTCTCTGGTAAACCCTGAGTTCTTATAGATCATCTTTCGAGTTCATATCGTTAGCAGTTTGAGCGATTTACTTCTTCTGGGAACGTTGTTGTTGTTGGATCATGAACTGATTTTACCATTTCCTGATCTATTCATCATGGTTCATTTAGCTTCTTTCTTTTCCTTTTCAAATTCAGTGGTGGATGACAAGTTTGTGAGGGATTCTGTGATGTTCTCCAACAAAACTTCTTCCACCTTTGGACAGGCTTTCAGTGACTTCACTTCTCCCAGAAAAGGTAATTCGTGATGGAGTATATCCCATCCAACATCAAATATTTAATGTTATTGAAACTGAACTGCCTCTTGTGATTGATTGTAGGGAAGGAAACCTCTGGTGCTGTGGTTGACATAGAAGCTGAAGTAAAAGATGTGGACTGAAGTAGTCTTACTGGCCGTCTTCATTCTGGTATGAAAGTTTGTCGTCGACTGAGTCGATACATTGCTTTGCTTTCTGGTGAACGTTTTCTGATTCAGCCTTTGCACCATCTGTCATTTCTCTATCCTTTAGCGTCGTCTCGCCTTTGCAACTTCAACAAAACAAAAGCTCGTTTTCGCTCTCGTTTTTTTGCTTATTCATCTGAATACCACATAGCAACTTGTAGAGCATAAAACAGCTTACTCCATTTCAAAAACTCCTAAAACGATTGAACCCAGATATCAAAACTTCTAAAACGACTGATCCCAGATCCAAAATCCCAGTTCCTGCAGATATCAAAATTCCTGGCATTGGTGTTCACTCAGATCTCTAGGGTTGTGTACTTGTTAGTTTGTTTTTTTCATTCTTATTTCATTTCGATTTTACAGGTATTTGAATAACAATGAGATT

mRNA sequence

ATCTCACTCTCACACCAGATAATCCATCATGAATTTCTTCTTCTCTGCTTCCTCATATTCCCTTTAATCCCAAATGACAAGTTTCATCAGATTCTCTTCCTTCAACCTACTACACGACAATTTCTACACAAAACCCACCCGATTTAATCCTCTTCCGCCCCCGAAGGTTGCCTCCTGCCACCGAAATGGGTTCCGGTTGAGGCTTTGTCGAGGGAAGTTGCCGTTTCTTAGCGGGGGTTGGGGTAACAATGGGGTTTCGGGAAAATACGGAGTGTTTAAGGGAAAGAGAGGGCTAATTGTAGCAAGGTTTAATCAGGGTTTTGGGTTTAACGGCGGCGGAAGCGGCGGCGGCGGCGGAGACGATGGTGCAACCGCGAGGCTTCTGGGTAATATCGCTTTGGCTGCTGGGTTAACTTACCTTTCAGTAACAGGGCAGCTTGGCTGGATTTTAGATGCGATCGTTTCCATTTGGCTTGTTGCAGTTCTTGTACCAATTGTTGGAGTGGCCGCTTTTATATGGTGGGCAGGACGAGATATTGTTCAAAGCACTTGTCCTAACTGTGGAAATGAATTCCAAATATTCAAATCAACTCTGAATGAAGAACTGCAACTATGCCCTTTCTGTAGCCAACCTTTCTCTGTGGTGGATGACAAGTTTGTGAGGGATTCTGTGATGTTCTCCAACAAAACTTCTTCCACCTTTGGACAGGCTTTCAGTGACTTCACTTCTCCCAGAAAAGGGAAGGAAACCTCTGGTGCTGTGGTTGACATAGAAGCTGAAGTAAAAGATGTGGACTGAAGTAGTCTTACTGGCCGTCTTCATTCTGGTATGAAAGTTTGTCGTCGACTGAGTCGATACATTGCTTTGCTTTCTGGTGAACGTTTTCTGATTCAGCCTTTGCACCATCTGTCATTTCTCTATCCTTTAGCGTCGTCTCGCCTTTGCAACTTCAACAAAACAAAAGCTCGTTTTCGCTCTCGTTTTTTTGCTTATTCATCTGAATACCACATAGCAACTTGTAGAGCATAAAACAGCTTACTCCATTTCAAAAACTCCTAAAACGATTGAACCCAGATATCAAAACTTCTAAAACGACTGATCCCAGATCCAAAATCCCAGTTCCTGCAGATATCAAAATTCCTGGCATTGGTGTTCACTCAGATCTCTAGGGTTGTGTACTTGTTAGTTTGTTTTTTTCATTCTTATTTCATTTCGATTTTACAGGTATTTGAATAACAATGAGATT

Coding sequence (CDS)

ATGACAAGTTTCATCAGATTCTCTTCCTTCAACCTACTACACGACAATTTCTACACAAAACCCACCCGATTTAATCCTCTTCCGCCCCCGAAGGTTGCCTCCTGCCACCGAAATGGGTTCCGGTTGAGGCTTTGTCGAGGGAAGTTGCCGTTTCTTAGCGGGGGTTGGGGTAACAATGGGGTTTCGGGAAAATACGGAGTGTTTAAGGGAAAGAGAGGGCTAATTGTAGCAAGGTTTAATCAGGGTTTTGGGTTTAACGGCGGCGGAAGCGGCGGCGGCGGCGGAGACGATGGTGCAACCGCGAGGCTTCTGGGTAATATCGCTTTGGCTGCTGGGTTAACTTACCTTTCAGTAACAGGGCAGCTTGGCTGGATTTTAGATGCGATCGTTTCCATTTGGCTTGTTGCAGTTCTTGTACCAATTGTTGGAGTGGCCGCTTTTATATGGTGGGCAGGACGAGATATTGTTCAAAGCACTTGTCCTAACTGTGGAAATGAATTCCAAATATTCAAATCAACTCTGAATGAAGAACTGCAACTATGCCCTTTCTGTAGCCAACCTTTCTCTGTGGTGGATGACAAGTTTGTGAGGGATTCTGTGATGTTCTCCAACAAAACTTCTTCCACCTTTGGACAGGCTTTCAGTGACTTCACTTCTCCCAGAAAAGGGAAGGAAACCTCTGGTGCTGTGGTTGACATAGAAGCTGAAGTAAAAGATGTGGACTGA

Protein sequence

MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNGVSGKYGVFKGKRGLIVARFNQGFGFNGGGSGGGGGDDGATARLLGNIALAAGLTYLSVTGQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQLCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDVD

Homology

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BLAST of Carg24070 vs. NCBI nr
Match: XP_022929397.1 (uncharacterized protein LOC111435981 [Cucurbita moschata])

HSP 1 Score: 456.1 bits (1172), Expect = 7.6e-125
Identity = 240/241 (99.59%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLR CRGKLPFLSGGWGNNG
Sbjct: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRPCRGKLPFLSGGWGNNG 60

Query: 61  VSGKYGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG 120
           VSGKYGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG
Sbjct: 61  VSGKYGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG 120

Query: 121 QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL 180
           QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL
Sbjct: 121 QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL 180

Query: 181 CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV 240
           CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV
Sbjct: 181 CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV 240

Query: 241 D 242
           D
Sbjct: 241 D 241

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BLAST of Carg24070 vs. NCBI nr
Match: XP_023552443.1 (uncharacterized protein LOC111810103 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.0 bits (1164), Expect = 6.4e-124
Identity = 238/241 (98.76%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLC GKLPFLSGGWGNNG
Sbjct: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCGGKLPFLSGGWGNNG 60

Query: 61  VSGKYGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG 120
           VSGKYGVFKG+RGLIVARF+QGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG
Sbjct: 61  VSGKYGVFKGRRGLIVARFDQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTG 120

Query: 121 QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL 180
           QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL
Sbjct: 121 QLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQL 180

Query: 181 CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV 240
           CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV
Sbjct: 181 CPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDV 240

Query: 241 D 242
           D
Sbjct: 241 D 241

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BLAST of Carg24070 vs. NCBI nr
Match: XP_022985259.1 (uncharacterized protein LOC111483302 [Cucurbita maxima])

HSP 1 Score: 434.5 bits (1116), Expect = 2.4e-118
Identity = 234/242 (96.69%), Postives = 234/242 (96.69%), Query Frame = 0


Query: 1   MTSFIRFSSFN-LLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNN 60
           MTSFIRFSSFN LLHDNFY KPTRFNPLPPPKVASC RNGFRLRLC GKLPFLSGGW N 
Sbjct: 1   MTSFIRFSSFNLLLHDNFYKKPTRFNPLPPPKVASCDRNGFRLRLCGGKLPFLSGGWSNK 60

Query: 61  GVSGKYGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVT 120
           GV GKYGVFKGKRGLIVARFNQGFGFN XXXXXXXXXXXXTARLLGNIALAAGLTYLSVT
Sbjct: 61  GVLGKYGVFKGKRGLIVARFNQGFGFN-XXXXXXXXXXXXTARLLGNIALAAGLTYLSVT 120

Query: 121 GQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQ 180
           GQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQ
Sbjct: 121 GQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQ 180

Query: 181 LCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240
           LCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD
Sbjct: 181 LCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240

Query: 241 VD 242
           VD
Sbjct: 241 VD 241

[Close]

BLAST of Carg24070 vs. NCBI nr
Match: XP_004149291.1 (PREDICTED: uncharacterized protein LOC101205846 [Cucumis sativus] >KGN56214.1 hypothetical protein Csa_3G099750 [Cucumis sativus])

HSP 1 Score: 377.1 bits (967), Expect = 4.5e-101
Identity = 209/246 (84.96%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFS+FN+LH+NF  KPT+FNPLPPPKV  C  +G RLR    +L F  GGW +  
Sbjct: 1   MTSFIRFSTFNILHNNFCNKPTKFNPLPPPKVVFCKPSGLRLRFYGWRLLFPGGGWVDQR 60

Query: 61  VSGKYGVFKGKRG-LIVARFNQGFGFN----XXXXXXXXXXXXXTARLLGNIALAAGLTY 120
           V GK+G FKGKRG LIVARFNQGFGFN    XXXXXXXXXXXXX ARL+GNIALAAGLTY
Sbjct: 61  VFGKHGGFKGKRGRLIVARFNQGFGFNXXXXXXXXXXXXXXXXXXARLVGNIALAAGLTY 120

Query: 121 LSVTGQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLN 180
           LSVTGQLGW+LDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQS CPNCGNEFQIFKSTLN
Sbjct: 121 LSVTGQLGWVLDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSNCPNCGNEFQIFKSTLN 180

Query: 181 EELQLCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA 240
           EELQLCPFCSQPFSVVDDKFVRDSV FSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA
Sbjct: 181 EELQLCPFCSQPFSVVDDKFVRDSVKFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA 240

Query: 241 EVKDVD 242
           EVKDVD
Sbjct: 241 EVKDVD 246

[Close]

BLAST of Carg24070 vs. NCBI nr
Match: XP_008452285.1 (PREDICTED: uncharacterized protein LOC103493356 [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 5.9e-101
Identity = 203/242 (83.88%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFS+FN+LH+NF  KPT+FNPLPPPKV  C+ +G RLR    +L F  GGW    
Sbjct: 1   MTSFIRFSTFNILHNNFCNKPTKFNPLPPPKVVICNPSGLRLRFYGRRLFFPGGGWVEQR 60

Query: 61  VSGKYGVFKGKRG-LIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVT 120
           V GK+  FKGKRG LIVARFNQGFGFN    XXXXXXX  TARLLGNIALAAGLTYLSVT
Sbjct: 61  VFGKHRGFKGKRGRLIVARFNQGFGFN--GGXXXXXXXGATARLLGNIALAAGLTYLSVT 120

Query: 121 GQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQ 180
           GQLGW+LDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQS CPNCGNEFQIFKSTLNEELQ
Sbjct: 121 GQLGWVLDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSNCPNCGNEFQIFKSTLNEELQ 180

Query: 181 LCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240
           LCPFCSQPFSVVDDKFVRDSV FS KTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD
Sbjct: 181 LCPFCSQPFSVVDDKFVRDSVTFSKKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240

Query: 241 VD 242
           VD
Sbjct: 241 VD 240

[Close]

BLAST of Carg24070 vs. TAIR10
Match: AT4G27390.1 (unknown protein)

HSP 1 Score: 207.6 bits (527), Expect = 8.5e-54
Identity = 101/141 (71.63%), Postives = 123/141 (87.23%), Query Frame = 0


Query: 102 RLLGNIALAAGLTYLSVTGQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCP 161
           R+LGN+ALA GLTYLS+TGQLGWILDAIVS+WL+ V+VPI+G+ AF WWA RDIVQS CP
Sbjct: 96  RILGNLALAIGLTYLSMTGQLGWILDAIVSVWLIVVIVPILGLGAFFWWAQRDIVQSNCP 155

Query: 162 NCGNEFQIFKSTLNEELQLCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTS-P 221
           NCGNEFQIFKS +++E+QLCPFC+QPFSVVDDKFV++ V FSN+T++ FGQ  + F+S P
Sbjct: 156 NCGNEFQIFKSAMDDEVQLCPFCTQPFSVVDDKFVKEPVKFSNQTTA-FGQDLNGFSSKP 215

Query: 222 RKGKETSGAVVDIEAEVKDVD 242
           +KGK +S AVVDIEAEV D D
Sbjct: 216 KKGKGSSTAVVDIEAEVTDAD 235

[Close]

BLAST of Carg24070 vs. TrEMBL
Match: tr|A0A0A0L5A4|A0A0A0L5A4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099750 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 3.0e-101
Identity = 209/246 (84.96%), Postives = 219/246 (89.02%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFS+FN+LH+NF  KPT+FNPLPPPKV  C  +G RLR    +L F  GGW +  
Sbjct: 1   MTSFIRFSTFNILHNNFCNKPTKFNPLPPPKVVFCKPSGLRLRFYGWRLLFPGGGWVDQR 60

Query: 61  VSGKYGVFKGKRG-LIVARFNQGFGFN----XXXXXXXXXXXXXTARLLGNIALAAGLTY 120
           V GK+G FKGKRG LIVARFNQGFGFN    XXXXXXXXXXXXX ARL+GNIALAAGLTY
Sbjct: 61  VFGKHGGFKGKRGRLIVARFNQGFGFNXXXXXXXXXXXXXXXXXXARLVGNIALAAGLTY 120

Query: 121 LSVTGQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLN 180
           LSVTGQLGW+LDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQS CPNCGNEFQIFKSTLN
Sbjct: 121 LSVTGQLGWVLDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSNCPNCGNEFQIFKSTLN 180

Query: 181 EELQLCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA 240
           EELQLCPFCSQPFSVVDDKFVRDSV FSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA
Sbjct: 181 EELQLCPFCSQPFSVVDDKFVRDSVKFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEA 240

Query: 241 EVKDVD 242
           EVKDVD
Sbjct: 241 EVKDVD 246

[Close]

BLAST of Carg24070 vs. TrEMBL
Match: tr|A0A1S3BUA7|A0A1S3BUA7_CUCME (uncharacterized protein LOC103493356 OS=Cucumis melo OX=3656 GN=LOC103493356 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 3.9e-101
Identity = 203/242 (83.88%), Postives = 212/242 (87.60%), Query Frame = 0


Query: 1   MTSFIRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNG 60
           MTSFIRFS+FN+LH+NF  KPT+FNPLPPPKV  C+ +G RLR    +L F  GGW    
Sbjct: 1   MTSFIRFSTFNILHNNFCNKPTKFNPLPPPKVVICNPSGLRLRFYGRRLFFPGGGWVEQR 60

Query: 61  VSGKYGVFKGKRG-LIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVT 120
           V GK+  FKGKRG LIVARFNQGFGFN    XXXXXXX  TARLLGNIALAAGLTYLSVT
Sbjct: 61  VFGKHRGFKGKRGRLIVARFNQGFGFN--GGXXXXXXXGATARLLGNIALAAGLTYLSVT 120

Query: 121 GQLGWILDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQ 180
           GQLGW+LDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQS CPNCGNEFQIFKSTLNEELQ
Sbjct: 121 GQLGWVLDAIVSIWLVAVLVPIVGVAAFIWWAGRDIVQSNCPNCGNEFQIFKSTLNEELQ 180

Query: 181 LCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240
           LCPFCSQPFSVVDDKFVRDSV FS KTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD
Sbjct: 181 LCPFCSQPFSVVDDKFVRDSVTFSKKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKD 240

Query: 241 VD 242
           VD
Sbjct: 241 VD 240

[Close]

BLAST of Carg24070 vs. TrEMBL
Match: tr|A0A2I4H603|A0A2I4H603_9ROSI (uncharacterized protein LOC109013815 OS=Juglans regia OX=51240 GN=LOC109013815 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.1e-69
Identity = 144/224 (64.29%), Postives = 176/224 (78.57%), Query Frame = 0


Query: 18  YTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNGVSGKYGVFKGKRGLIVA 77
           Y KP     L   K+AS H N F+LR  R +  FL+G  G +G+  +   +K K+ +++ 
Sbjct: 25  YKKPANCCSLSRAKIASLHHNRFKLRPYRERWSFLAGSRGQDGILVREAGWKMKKRVVLV 84

Query: 78  RFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTGQLGWILDAIVSIWLVAV 137
           RFNQGFGFN  XXXXXXX    TAR+LGN+ALA GLTYLS+TGQLGW+LDAIVS+WL AV
Sbjct: 85  RFNQGFGFN--XXXXXXXDDGATARILGNLALAIGLTYLSMTGQLGWVLDAIVSVWLFAV 144

Query: 138 LVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQLCPFCSQPFSVVDDKFVR 197
           L+PIVG+ AF+WWAGRD+VQ TCPNCGN+FQ+FKS+LN++LQLCPFCSQPFSVV D+FVR
Sbjct: 145 LLPIVGLGAFLWWAGRDMVQGTCPNCGNDFQVFKSSLNDDLQLCPFCSQPFSVVGDEFVR 204

Query: 198 DSVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDVD 242
           DSV FSN+ S+TFGQAF DF+   KGK +S AVVD+EAEVKD D
Sbjct: 205 DSVKFSNQ-STTFGQAFKDFSRSMKGKGSSMAVVDVEAEVKDAD 245

[Close]

BLAST of Carg24070 vs. TrEMBL
Match: tr|A0A2P4L4F7|A0A2P4L4F7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_19113 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 1.6e-67
Identity = 147/223 (65.92%), Postives = 178/223 (79.82%), Query Frame = 0


Query: 20  KPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNGVSGKYGVFKGKRGLIVARF 79
           KP+    L   K+ S H N F+L+    +   L G    +G+  +   +KGK+  +V RF
Sbjct: 28  KPSNCYSLSRAKLGSLHDNRFKLKAYGERWSLLGGSKCGDGILVREEGWKGKKRGVVVRF 87

Query: 80  NQGFGFN-XXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTGQLGWILDAIVSIWLVAVL 139
           NQGFGFN XXXXXXXXXXXX TARLLGN+ALA GLTYLS TGQLGW+LDAIVS+WL AVL
Sbjct: 88  NQGFGFNXXXXXXXXXXXXXATARLLGNLALAIGLTYLSFTGQLGWVLDAIVSVWLFAVL 147

Query: 140 VPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEELQLCPFCSQPFSVVDDKFVRD 199
           VPIVG+ AF+WWAGRDIVQ TCPNCGN+FQ+FKS+LN++LQ CPFC+QPFSVVDDKFVRD
Sbjct: 148 VPIVGLGAFLWWAGRDIVQGTCPNCGNDFQVFKSSLNDDLQFCPFCTQPFSVVDDKFVRD 207

Query: 200 SVMFSNKTSSTFGQAFSDFTSPRKGKETSGAVVDIEAEVKDVD 242
           SV FSN+ S+TFGQAF+DF+  +KGK++S AVVD+EAE+KD D
Sbjct: 208 SVQFSNE-STTFGQAFNDFSRSKKGKDSSKAVVDVEAEIKDAD 249

[Close]

BLAST of Carg24070 vs. TrEMBL
Match: tr|A0A2P2K3A1|A0A2P2K3A1_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.4e-66
Identity = 150/245 (61.22%), Postives = 180/245 (73.47%), Query Frame = 0


Query: 5   IRFSSFNLLHDNFYTKPTRFNPLPPPKVASCHRNGFRLRLCRGKLPFLSGGWGNNGVSGK 64
           + F   N      + +P  +N LP  KVAS  RNGF+ R    +   +      +G+ GK
Sbjct: 10  VNFLPLNTPDILIHKRPINYNSLPSSKVASFTRNGFKWRAFGERWSSMEVVKRKDGILGK 69

Query: 65  YGVFKGKRGLIVARFNQGFGFNXXXXXXXXXXXXXTARLLGNIALAAGLTYLSVTGQLGW 124
              +KGKR +++ RFNQGFGFN  XXXXXXXXXX T RLLGNIALA GLTYLS+TGQLGW
Sbjct: 70  EDGWKGKRSVVLVRFNQGFGFN--XXXXXXXXXXGTVRLLGNIALAVGLTYLSLTGQLGW 129

Query: 125 ILDA-------IVSIWLVAVLVPIVGVAAFIWWAGRDIVQSTCPNCGNEFQIFKSTLNEE 184
           +LDA        +SIWL+AVL+PI+G+ AF+WWAGRDI+Q TCPNCGNEFQIFKSTLN+E
Sbjct: 130 VLDAXXXXXXXXISIWLLAVLIPILGLGAFLWWAGRDILQGTCPNCGNEFQIFKSTLNDE 189

Query: 185 LQLCPFCSQPFSVVDDKFVRDSVMFSNKTSSTFGQAFSDF-TSPRKGKETSGAVVDIEAE 242
           LQLCPFCSQPFSVV+D+FVRDS+ FS K S  FGQAFSDF  S  KGK++  AVVD+EAE
Sbjct: 190 LQLCPFCSQPFSVVNDEFVRDSIKFS-KQSRPFGQAFSDFYPSSNKGKDSPSAVVDVEAE 249

The following BLAST results are available for this feature:

BLAST of Carg24070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929397.1	7.6e-125	99.59	uncharacterized protein LOC111435981 [Cucurbita moschata]	[more]
XP_023552443.1	6.4e-124	98.76	uncharacterized protein LOC111810103 [Cucurbita pepo subsp. pepo]	[more]
XP_022985259.1	2.4e-118	96.69	uncharacterized protein LOC111483302 [Cucurbita maxima]	[more]
XP_004149291.1	4.5e-101	84.96	PREDICTED: uncharacterized protein LOC101205846 [Cucumis sativus] >KGN56214.1 hy...	[more]
XP_008452285.1	5.9e-101	83.88	PREDICTED: uncharacterized protein LOC103493356 [Cucumis melo]	[more]

BLAST of Carg24070 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27390.1	8.5e-54	71.63	unknown protein	[more]

BLAST of Carg24070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24070 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L5A4\|A0A0A0L5A4_CUCSA	3.0e-101	84.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G099750 PE=4 SV=1	[more]
tr\|A0A1S3BUA7\|A0A1S3BUA7_CUCME	3.9e-101	83.88	uncharacterized protein LOC103493356 OS=Cucumis melo OX=3656 GN=LOC103493356 PE=...	[more]
tr\|A0A2I4H603\|A0A2I4H603_9ROSI	5.1e-69	64.29	uncharacterized protein LOC109013815 OS=Juglans regia OX=51240 GN=LOC109013815 P...	[more]
tr\|A0A2P4L4F7\|A0A2P4L4F7_QUESU	1.6e-67	65.92	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_19113 PE=4 SV=1	[more]
tr\|A0A2P2K3A1\|A0A2P2K3A1_RHIMU	2.4e-66	61.22	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24070-RA	Carg24070-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36785	FAMILY NOT NAMED	coord: 6..241

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24070	Cla011754	Watermelon (97103) v1	carwmB0206
Carg24070	Csa3G099750	Cucumber (Chinese Long) v2	carcuB0244
Carg24070	MELO3C016549	Melon (DHL92) v3.5.1	carmeB0223
Carg24070	ClCG10G006570	Watermelon (Charleston Gray)	carwcgB0212
Carg24070	CSPI03G05920	Wild cucumber (PI 183967)	carcpiB0249
Carg24070	Cucsa.074530	Cucumber (Gy14) v1	carcgyB0262
Carg24070	CmaCh04G009140	Cucurbita maxima (Rimu)	carcmaB0301
Carg24070	CmaCh16G008020	Cucurbita maxima (Rimu)	carcmaB0299
Carg24070	CmoCh16G008590	Cucurbita moschata (Rifu)	carcmoB0303
Carg24070	CmoCh04G009820	Cucurbita moschata (Rifu)	carcmoB0305
Carg24070	Lsi05G006930	Bottle gourd (USVL1VR-Ls)	carlsiB195
Carg24070	Cp4.1LG14g00200	Cucurbita pepo (Zucchini)	carcpeB0308
Carg24070	CsGy3G006030	Cucumber (Gy14) v2	carcgybB0233
Carg24070	MELO3C016549.2	Melon (DHL92) v3.6.1	carmedB0229
Carg24070	CsaV3_3G006020	Cucumber (Chinese Long) v3	carcucB0248
Carg24070	Cla97C10G190510	Watermelon (97103) v2	carwmbB0220
Carg24070	Bhi11G000594	Wax gourd	carwgoB0270

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24070	Silver-seed gourd	carcarB255
Carg24070	Cucurbita pepo (Zucchini)	carcpeB0309