CmoCh04G009770 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009770
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	HrpN-interacting protein from Malus
Location	Cmo_Chr04 : 4959384 .. 4959668 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGGGTCTGTGCCCTCGGGAGTGCGATCGGTAATTACTTGTAATCTTACATCAATACATGCTAAGTAAAATTCTTTATCTTCATATAAGCTATACCAAATCTTCCCAACTTGCTAATATTTGTGAGTTGTCTAGGTTTGTATATGGTTTCTCAAGAAAGACAATTGCAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCAGTGGGGAAAATGTTTAG

mRNA sequence

ATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGGGTCTGTGCCCTCGGGAGTGCGATCGGTTTGTATATGGTTTCTCAAGAAAGACAATTGCAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCAGTGGGGAAAATGTTTAG

Coding sequence (CDS)

ATGGGAGGCAGAGGAGTTATTGGTGATAAATGGTCCATGAGGGTTCTTTGGGTCTGTGCCCTCGGGAGTGCGATCGGTTTGTATATGGTTTCTCAAGAAAGACAATTGCAGAACAGGCGAAGAATGTTGGCTGAGAGTCTGAAAGATGTGGAATCAGGAGGCAGTGGGGAAAATGTTTAG

Homology

[Close]

BLAST of CmoCh04G009770 vs. TrEMBL
Match: A0A0A0L386_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104860 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-20
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
           MGGRGVIGDKWS RVLWVCALGS IG+YMV+QERQLQNR+RML ESLKDVESGG+ ENV
Sbjct: 132 MGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLTESLKDVESGGNVENV 190

[Close]

BLAST of CmoCh04G009770 vs. TrEMBL
Match: A0A061FEK1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031418 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.8e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MG RGVIGDKWSMR+LWVCA+GSAIGLYMV+ ERQ QNR +M+AESLK +ES GSGE V
Sbjct: 1  MGTRGVIGDKWSMRILWVCAIGSAIGLYMVAVERQKQNRDKMMAESLKAIESEGSGEQV 59

[Close]

BLAST of CmoCh04G009770 vs. TrEMBL
Match: A0A0B0Q1F2_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_11506 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.4e-16
Identity = 44/59 (74.58%), Postives = 50/59 (84.75%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MG RGVIGDKWSMR+LW CA+GSA+ LYMV+ ERQ QNR +M+AESLK VES GSGE V
Sbjct: 4  MGTRGVIGDKWSMRILWGCAIGSAVALYMVAVERQKQNRDQMMAESLKAVESEGSGERV 62

[Close]

BLAST of CmoCh04G009770 vs. TrEMBL
Match: A0A0L9U7A6_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g202300 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.4e-16
Identity = 42/55 (76.36%), Postives = 47/55 (85.45%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGS 56
          MG RGVIGDKWSMR+LW CA+GSA+GLYMV+ ERQ QNR RMLAE L+  ESGGS
Sbjct: 1  MGTRGVIGDKWSMRILWACAIGSAVGLYMVAVERQTQNRARMLAEELRATESGGS 55

[Close]

BLAST of CmoCh04G009770 vs. TrEMBL
Match: W9R8T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025653 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.3e-15
Identity = 44/60 (73.33%), Postives = 50/60 (83.33%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGS-GENV 60
          M GRGVIGDKWSMR+LW CA+GSAIGLYMV+ ERQ+QNR RMLAES K ++S  S GE V
Sbjct: 1  MSGRGVIGDKWSMRILWACAIGSAIGLYMVAAERQMQNRNRMLAESFKAMDSDSSNGEEV 60

[Close]

BLAST of CmoCh04G009770 vs. TAIR10
Match: AT3G15395.1 (AT3G15395.1 unknown protein)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-18
Identity = 41/59 (69.49%), Postives = 48/59 (81.36%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MG RG+I DKWSMR+LW CA+GSAIGLYMV+ ERQ QNR R +AESL+  ES G G+NV
Sbjct: 1  MGSRGIINDKWSMRILWGCAIGSAIGLYMVAVERQTQNRARAMAESLRAAESQGDGDNV 59

[Close]

BLAST of CmoCh04G009770 vs. NCBI nr
Match: gi|449431830|ref|XP_004133703.1| (PREDICTED: uncharacterized protein LOC101203530 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-20
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MGGRGVIGDKWS RVLWVCALGS IG+YMV+QERQLQNR+RML ESLKDVESGG+ ENV
Sbjct: 1  MGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLTESLKDVESGGNVENV 59

[Close]

BLAST of CmoCh04G009770 vs. NCBI nr
Match: gi|700201100|gb|KGN56233.1| (hypothetical protein Csa_3G104860 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.9e-20
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 1   MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
           MGGRGVIGDKWS RVLWVCALGS IG+YMV+QERQLQNR+RML ESLKDVESGG+ ENV
Sbjct: 132 MGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLTESLKDVESGGNVENV 190

[Close]

BLAST of CmoCh04G009770 vs. NCBI nr
Match: gi|659102695|ref|XP_008452266.1| (PREDICTED: uncharacterized protein LOC103493339 [Cucumis melo])

HSP 1 Score: 105.1 bits (261), Expect = 4.1e-20
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MGGRGVIGDKWS RVLW+CALGSAIG+YMV+QER+LQNR+RML ESLKDVESGG+ ENV
Sbjct: 1  MGGRGVIGDKWSSRVLWLCALGSAIGMYMVAQERRLQNRQRMLTESLKDVESGGNVENV 59

[Close]

BLAST of CmoCh04G009770 vs. NCBI nr
Match: gi|590608886|ref|XP_007021389.1| (Uncharacterized protein TCM_031418 [Theobroma cacao])

HSP 1 Score: 95.9 bits (237), Expect = 2.5e-17
Identity = 46/59 (77.97%), Postives = 52/59 (88.14%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGSGENV 60
          MG RGVIGDKWSMR+LWVCA+GSAIGLYMV+ ERQ QNR +M+AESLK +ES GSGE V
Sbjct: 1  MGTRGVIGDKWSMRILWVCAIGSAIGLYMVAVERQKQNRDKMMAESLKAIESEGSGEQV 59

[Close]

BLAST of CmoCh04G009770 vs. NCBI nr
Match: gi|951071234|ref|XP_014491123.1| (PREDICTED: uncharacterized protein LOC106753782 [Vigna radiata var. radiata])

HSP 1 Score: 92.0 bits (227), Expect = 3.6e-16
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 1  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVSQERQLQNRRRMLAESLKDVESGGS 56
          MG RGVIGDKWSMR+LWVCA+GSA+GLYMV+ ERQ QNR RMLAE L+  ESGGS
Sbjct: 1  MGTRGVIGDKWSMRILWVCAIGSAVGLYMVAVERQAQNRARMLAEELRATESGGS 55

The following BLAST results are available for this feature:

BLAST of CmoCh04G009770 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009770 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L386_CUCSA	1.3e-20	86.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104860 PE=4 SV=1	[more]
A0A061FEK1_THECC	1.8e-17	77.97	Uncharacterized protein OS=Theobroma cacao GN=TCM_031418 PE=4 SV=1	[more]
A0A0B0Q1F2_GOSAR	7.4e-16	74.58	Uncharacterized protein OS=Gossypium arboreum GN=F383_11506 PE=4 SV=1	[more]
A0A0L9U7A6_PHAAN	7.4e-16	76.36	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g202300 PE=4 SV=1	[more]
W9R8T7_9ROSA	1.3e-15	73.33	Uncharacterized protein OS=Morus notabilis GN=L484_025653 PE=4 SV=1	[more]

BLAST of CmoCh04G009770 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G15395.1	1.8e-18	69.49	unknown protein	[more]

BLAST of CmoCh04G009770 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431830\|ref\|XP_004133703.1\|	1.9e-20	86.44	PREDICTED: uncharacterized protein LOC101203530 [Cucumis sativus]	[more]
gi\|700201100\|gb\|KGN56233.1\|	1.9e-20	86.44	hypothetical protein Csa_3G104860 [Cucumis sativus]	[more]
gi\|659102695\|ref\|XP_008452266.1\|	4.1e-20	84.75	PREDICTED: uncharacterized protein LOC103493339 [Cucumis melo]	[more]
gi\|590608886\|ref\|XP_007021389.1\|	2.5e-17	77.97	Uncharacterized protein TCM_031418 [Theobroma cacao]	[more]
gi\|951071234\|ref\|XP_014491123.1\|	3.6e-16	78.18	PREDICTED: uncharacterized protein LOC106753782 [Vigna radiata var. radiata]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009770.1	CmoCh04G009770.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009770	Cla011780	Watermelon (97103) v1	cmowmB674
CmoCh04G009770	Csa3G104860	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009770	MELO3C016521	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009770	ClCG10G006860	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009770	CSPI03G06110	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009770	MELO3C016521.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009770	CsaV3_3G006210	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009770	Carg21081	Silver-seed gourd	carcmoB0645
CmoCh04G009770	Carg00028	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009770	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G009770	Cucumber (Gy14) v1	cgycmoB0118
CmoCh04G009770	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009770	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009770	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009770	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009770	Bottle gourd (USVL1VR-Ls)	cmolsiB684
CmoCh04G009770	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009770	Watermelon (97103) v2	cmowmbB689
CmoCh04G009770	Wax gourd	cmowgoB0814