Cla011780 (gene) Watermelon (97103) v1

Overview
NameCla011780
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionHrpN-interacting protein from Malus (AHRD V1 *-*- A8HJR4_MALDO)
LocationChr7 : 10222290 .. 10223761 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAAAGAGAAAGGATAGTAATATGTGAGAGGAAAGGGAGCGAGAGTGAGAATAAGAGAGTGAAAAAACTCATTCAATGTGTTAGTAATTTCACTCCAATTTAATATTATTGGAGAATCCTTACTTTCATAAGAATAAGAATAAGAATGAAACAAATCTCAATTTCTTCCCCCACAAATTGTCACCCATCGGACCAACCCTGCCCTATTTCATTTCTAGAATCATAGACTTCTTATCCAAGATTCCCCCAAACGACTCCTTTTTAAATTTTTAACCATCATAGCATGAGGATCCTTCTTTTCTATACCTATTTCTAGGTCAGCGTCCCTCCCCACCCATCACCAGCTACTGCATCCGCCAACGCACACAGCAGTCCGCTGCCGCTCCTACCTGAAGCAGTCTCAGCGTCTGCCCCCATCCTCCCAACGAACTCGCCTCTGCTCTTCCCTCTCACGCTCTCTCGCCTCTCTGTGCAATCCGAGTTACTTAACTCTGTCAGTCCCTAACCCGCGCTGTTGGTGAGATCTCGCCACCGCTCATTTTTCAGATCCAGCCCAATGTTTTGCTTCTGTTTTATCTTTAAGCTGTTTCATTGATTTATTCTGTTCACTCATGAAGTATAAAATCACAATTAGCATTATTTCTCTATTATTTGTTGTTGATTTCTTCTTCCACCAATGTTTAATCAATCCAAATGATAATATAAAACTAAAATACATCAGAGTTCGCTTGAATGACATTGAATTTGCTTGAATATAGAAGAAACCATCGAAGCATAACTGGTGTGAGTTGGCGTAAATTTATTTCTTGAATATAGTAATGGTCCAAATAGTAGAACATGAACCTATCATGCCATGTTCTTCGGCCCTTTTGGAGGCTTGATTCTCTGATTGCTTTAATTACTAAAATAGGCTATTTGCTCAATATTTGCAGAAGGATATGGGAGGCAGAGGAGTCATTGGTGACAAATGGTCCATGAGGGTTCTCTGGGTCTGTGCTCTAGGAAGTGCAATCGGTAATCGCTTTTAACGCATGTTTGAAAGTGGTTTTGAAATGCTTAAAATCACGTTTTGTAGTATGTTTTTAATCATTCAAAATCAATTTCGATTGCATGTAATTTCAGTTTATAAGTGTGAGACCAAACTTTGGATTGATTTGAATGATTAAACGAATGGTTAGGACGGACGGGTTATGAGTGATTTTGAGTATGACAAAAGTATATGCTCTTAATCTTCTTGCACATGAATGCTTTCTATGTAAATCTTTTGCACGAAGGTTCATCTAATTTATCAAGAGTAACATTCTTTATCTTCATTATGGTATAACGAAGCTTCCTAACTTGATAATTATTGTCATTTGTCTAGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAAAACAGGCAAAGAATGTTGGCTGAGAGTCTCAAAGATGCAGAATCAGGAAGCAGTGGTGAAAATGTGTAG

mRNA sequence

ATGAGAGAAAGAGAAAGGATAGTAATATGTGAGAGGAAAGGGAGCGAGAGTGAGAATAAGAGAGTGAAAAAACTCATTCAATGTGTCAGCGTCCCTCCCCACCCATCACCAGCTACTGCATCCGCCAACGCACACAGCAGTCCGCTGCCGCTCCTACCTGAAGCAGTCTCAGCGTCTGCCCCCATCCTCCCAACGAACTCGCCTCTGCTCTTCCCTCTCACGCTCTCTCGCCTCTCTGTGCAATCCGAGTTACTTAACTCTAAGGATATGGGAGGCAGAGGAGTCATTGGTGACAAATGGTCCATGAGGGTTCTCTGGGTCTGTGCTCTAGGAAGTGCAATCGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAAAACAGGCAAAGAATGTTGGCTGAGAGTCTCAAAGATGCAGAATCAGGAAGCAGTGGTGAAAATGTGTAG

Coding sequence (CDS)

ATGAGAGAAAGAGAAAGGATAGTAATATGTGAGAGGAAAGGGAGCGAGAGTGAGAATAAGAGAGTGAAAAAACTCATTCAATGTGTCAGCGTCCCTCCCCACCCATCACCAGCTACTGCATCCGCCAACGCACACAGCAGTCCGCTGCCGCTCCTACCTGAAGCAGTCTCAGCGTCTGCCCCCATCCTCCCAACGAACTCGCCTCTGCTCTTCCCTCTCACGCTCTCTCGCCTCTCTGTGCAATCCGAGTTACTTAACTCTAAGGATATGGGAGGCAGAGGAGTCATTGGTGACAAATGGTCCATGAGGGTTCTCTGGGTCTGTGCTCTAGGAAGTGCAATCGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAAAACAGGCAAAGAATGTTGGCTGAGAGTCTCAAAGATGCAGAATCAGGAAGCAGTGGTGAAAATGTGTAG

Protein sequence

MRERERIVICERKGSESENKRVKKLIQCVSVPPHPSPATASANAHSSPLPLLPEAVSASAPILPTNSPLLFPLTLSRLSVQSELLNSKDMGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV
Homology
[Close]
BLAST of Cla011780 vs. TrEMBL
Match: A0A0A0L386_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104860 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.7e-22
Identity = 73/135 (54.07%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 35  PSPATASANAHSSPLPLLPEAVSASAPILPTNSPL-LFPLT-----LSR----------- 94
           PSPATAS   H++ +   P  +  S  +   + PL L PL      LSR           
Sbjct: 57  PSPATASPPPHAA-VRRRPSYLKQSHRLHRISLPLTLSPLPEIANKLSRDNWCEEAYSSF 116

Query: 95  LSVQSELL----NSKDMGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLA 149
           LS++        + KDMGGRGVIGDKWS RVLWVCALGS IG+YMVAQERQLQNRQRML 
Sbjct: 117 LSIEESFEIVPNSGKDMGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLT 176

[Close]
BLAST of Cla011780 vs. TrEMBL
Match: A0A061FEK1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_031418 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MG RGVIGDKWSMR+LWVCA+GSAIGLYMVA ERQ QNR +M+AESLK  ES  SGE V
Sbjct: 1   MGTRGVIGDKWSMRILWVCAIGSAIGLYMVAVERQKQNRDKMMAESLKAIESEGSGEQV 59

[Close]
BLAST of Cla011780 vs. TrEMBL
Match: W9R8T7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025653 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-16
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSS-GENV 149
           M GRGVIGDKWSMR+LW CA+GSAIGLYMVA ERQ+QNR RMLAES K  +S SS GE V
Sbjct: 1   MSGRGVIGDKWSMRILWACAIGSAIGLYMVAAERQMQNRNRMLAESFKAMDSDSSNGEEV 60

[Close]
BLAST of Cla011780 vs. TrEMBL
Match: A0A067G379_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035441mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-16
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MG RGVIGDKWSMRVLW CA+GSAIGLYMVA +RQ++NR+RMLAESLK AES   G+ V
Sbjct: 1   MGSRGVIGDKWSMRVLWACAIGSAIGLYMVAVDRQMKNRERMLAESLK-AESDGVGDQV 58

[Close]
BLAST of Cla011780 vs. TrEMBL
Match: V4ULP6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010140mg PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-16
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MG RGVIGDKWSMRVLW CA+GSAIGLYMVA +RQ++NR+RMLAESLK AES   G+ V
Sbjct: 1   MGSRGVIGDKWSMRVLWACAIGSAIGLYMVAVDRQMKNRERMLAESLK-AESDGVGDQV 58

[Close]
BLAST of Cla011780 vs. NCBI nr
Match: gi|700201100|gb|KGN56233.1| (hypothetical protein Csa_3G104860 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 3.8e-22
Identity = 73/135 (54.07%), Postives = 84/135 (62.22%), Query Frame = 1 

Query: 35  PSPATASANAHSSPLPLLPEAVSASAPILPTNSPL-LFPLT-----LSR----------- 94
           PSPATAS   H++ +   P  +  S  +   + PL L PL      LSR           
Sbjct: 57  PSPATASPPPHAA-VRRRPSYLKQSHRLHRISLPLTLSPLPEIANKLSRDNWCEEAYSSF 116

Query: 95  LSVQSELL----NSKDMGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLA 149
           LS++        + KDMGGRGVIGDKWS RVLWVCALGS IG+YMVAQERQLQNRQRML 
Sbjct: 117 LSIEESFEIVPNSGKDMGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLT 176

[Close]
BLAST of Cla011780 vs. NCBI nr
Match: gi|449431830|ref|XP_004133703.1| (PREDICTED: uncharacterized protein LOC101203530 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-20
Identity = 51/59 (86.44%), Postives = 53/59 (89.83%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MGGRGVIGDKWS RVLWVCALGS IG+YMVAQERQLQNRQRML ESLKD ESG + ENV
Sbjct: 1   MGGRGVIGDKWSTRVLWVCALGSVIGMYMVAQERQLQNRQRMLTESLKDVESGGNVENV 59

[Close]
BLAST of Cla011780 vs. NCBI nr
Match: gi|659102695|ref|XP_008452266.1| (PREDICTED: uncharacterized protein LOC103493339 [Cucumis melo])

HSP 1 Score: 105.5 bits (262), Expect = 8.0e-20
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MGGRGVIGDKWS RVLW+CALGSAIG+YMVAQER+LQNRQRML ESLKD ESG + ENV
Sbjct: 1   MGGRGVIGDKWSSRVLWLCALGSAIGMYMVAQERRLQNRQRMLTESLKDVESGGNVENV 59

[Close]
BLAST of Cla011780 vs. NCBI nr
Match: gi|590608886|ref|XP_007021389.1| (Uncharacterized protein TCM_031418 [Theobroma cacao])

HSP 1 Score: 95.5 bits (236), Expect = 8.2e-17
Identity = 46/59 (77.97%), Postives = 50/59 (84.75%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 149
           MG RGVIGDKWSMR+LWVCA+GSAIGLYMVA ERQ QNR +M+AESLK  ES  SGE V
Sbjct: 1   MGTRGVIGDKWSMRILWVCAIGSAIGLYMVAVERQKQNRDKMMAESLKAIESEGSGEQV 59

[Close]
BLAST of Cla011780 vs. NCBI nr
Match: gi|703108322|ref|XP_010098993.1| (hypothetical protein L484_025653 [Morus notabilis])

HSP 1 Score: 93.2 bits (230), Expect = 4.1e-16
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 1 

Query: 90  MGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSS-GENV 149
           M GRGVIGDKWSMR+LW CA+GSAIGLYMVA ERQ+QNR RMLAES K  +S SS GE V
Sbjct: 1   MSGRGVIGDKWSMRILWACAIGSAIGLYMVAAERQMQNRNRMLAESFKAMDSDSSNGEEV 60

The following BLAST results are available for this feature:
BLAST of Cla011780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L386_CUCSA2.7e-2254.07Uncharacterized protein OS=Cucumis sativus GN=Csa_3G104860 PE=4 SV=1[more]
A0A061FEK1_THECC5.7e-1777.97Uncharacterized protein OS=Theobroma cacao GN=TCM_031418 PE=4 SV=1[more]
W9R8T7_9ROSA2.8e-1676.67Uncharacterized protein OS=Morus notabilis GN=L484_025653 PE=4 SV=1[more]
A0A067G379_CITSI8.3e-1676.27Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035441mg PE=4 SV=1[more]
V4ULP6_9ROSI8.3e-1676.27Uncharacterized protein OS=Citrus clementina GN=CICLE_v10010140mg PE=4 SV=1[more]
BLAST of Cla011780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201100|gb|KGN56233.1|3.8e-2254.07hypothetical protein Csa_3G104860 [Cucumis sativus][more]
gi|449431830|ref|XP_004133703.1|3.6e-2086.44PREDICTED: uncharacterized protein LOC101203530 [Cucumis sativus][more]
gi|659102695|ref|XP_008452266.1|8.0e-2084.75PREDICTED: uncharacterized protein LOC103493339 [Cucumis melo][more]
gi|590608886|ref|XP_007021389.1|8.2e-1777.97Uncharacterized protein TCM_031418 [Theobroma cacao][more]
gi|703108322|ref|XP_010098993.1|4.1e-1676.67hypothetical protein L484_025653 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU47214watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla011780Cla011780.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU47214WMU47214transcribed_cluster