CmoCh04G009520 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G009520
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	COX assembly mitochondrial protein 2
Location	Cmo_Chr04 : 4856599 .. 4857951 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAGACATAGAACGAAAGCTGGCCGTTCTCGATTCGGGATCAGATTTTTCATGCTTTTCACAGGTTGGGTTTCTTGATTTGAATCTTCTTCTTCATCGATTTGATTCATATGCGTTTTTGTAGATCGTCAGTTCTAAAATAGCACTGATTCTATGGCCAAAAATAATCGTAGTGATTCTCCGGAAGTGGATATGAAAACCCTATATTTCGATTGAAATTGTATAACCGCTAATGGATTTGTTTAGATAATAGTTTGAATCGGAATCTTAAACATCCGCATCCATTCTCTTCTCTCTGAAACGAAATCGATGCAATGATTGTGTGGTTTCTGAAAACGATTTTGGGATTTTTGTGAACTACTTTGTTGCAGGTTGCTGTGGATCTCGTAAGTGAATATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCCGAAGTAAGTTCGAAACTATGCTTTCTTAATATATATATATATATATTATATAGCTGAATTCCTCGAGATGGTTGGACTTGACCTTCATTTCACTTTCGAATTTTTTGATTATGAATTGATTATGCTGTATGCTTTTAAGAAAGAAAAGAAAATCTTAGCTTGAACTCCGGGTTTCCCCTCTTGCATTTGCACACCCATTTTAATGATGAATTCAAGTCACCTCCATTCAATGAAGGGTTGAATAATTTACTATCTCATTTAGTTTTATACCGATGGAATTGAAATGATGATCCTCGAGCTATAATTAGTTGAACCGTGTTAAGTAGGTGGTTCGGTGCAGTGAGCTTACTTCTGTGAAATTGCTGTAGGAACTCAAATTTATCAACAAACTAGCAAGAGACTCTATAGATTTTTCCTTGGTGATTATTGGTAAAATAAGTTCAAATTACATGATGATCACCTATTAAGTTATTAAAAGTCTTTTGGGATTCTTAACAACCAAATGTCGTAGAGTTAGAGGTAGAGTTAAAGGTTGAAAGCTGGCCTAAACATTTGCGAGTTAGAAGGGAAAAAGGTAAGAGACTTCTCCAGTAGCTTACTAAAGCCCAAAGTTCCTTACTTGTACAGATTATTGAGGAGTTTCAAAAGTGTCATCTAGACCATCCCATTGGAAAATTTTTGGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAGTGAGTTTTCTGTTCTATATTCTAGTTTTCCTTCGTTTCTTTTGTAGGCCTGCTCCTTTTTCCATCTCAAATGACACTTTCTATTTCTGTTCACAGAAAGCTCTGAAACGAAAGGCAAACTTTGAGCAGAGTAAAAAAATGAAGGAAAGGCTAGATGCTTTAAGAAAGGAAAACGCTTTATGA

mRNA sequence

TATAGACATAGAACGAAAGCTGGCCGTTCTCGATTCGGGATCAGATTTTTCATGCTTTTCACAGGTTGCTGTGGATCTCGTAAGTGAATATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCCGAAATTATTGAGGAGTTTCAAAAGTGTCATCTAGACCATCCCATTGGAAAATTTTTGGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAAAAGCTCTGAAACGAAAGGCAAACTTTGAGCAGAGTAAAAAAATGAAGGAAAGGCTAGATGCTTTAAGAAAGGAAAACGCTTTATGA

Coding sequence (CDS)

ATGCATCCTCCTCTAACTTTGCATAAGCACCCGATGTGTGCCGAAATTATTGAGGAGTTTCAAAAGTGTCATCTAGACCATCCCATTGGAAAATTTTTGGGTGAATGCACAGATCTCAAAATTAAGCTTGATCGATGTTTCAGGCAGGAAAAAGCTCTGAAACGAAAGGCAAACTTTGAGCAGAGTAAAAAAATGAAGGAAAGGCTAGATGCTTTAAGAAAGGAAAACGCTTTATGA

Homology

[Close]

BLAST of CmoCh04G009520 vs. TrEMBL
Match: A0A067DR89_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034791mg PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.1e-33
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHLDHPIGKF G+CT+LKIKLDRCFRQEKA+KRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL++LRKE A
Sbjct: 61 QSKKLKERLESLRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. TrEMBL
Match: A0A0B0MZA9_GOSAR (Putative C16orf61 OS=Gossypium arboreum GN=F383_34011 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHL+HPI KF GECT+LKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL ALRKE A
Sbjct: 61 QSKKLKERLQALRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. TrEMBL
Match: V4T064_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002996mg PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-32
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHLDHPIGKF G+CT+LKIKLDRCFRQEKA+KRKANF+
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFQ 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL++LRKE A
Sbjct: 61 QSKKLKERLESLRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. TrEMBL
Match: A0A0D2NG26_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G000700 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.5e-32
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHL+HPI KF GECT+LKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLEHPITKFFGECTELKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL ALRKE A
Sbjct: 61 QSKKLKERLHALRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. TrEMBL
Match: A0A0B2PM56_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_032174 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.3e-32
Identity = 67/77 (87.01%), Postives = 74/77 (96.10%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH++HPI KF GECTDLKIKLDRCFR+EKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIEHPIAKFFGECTDLKIKLDRCFREEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          +SKK+KE+L ALRKENA
Sbjct: 61 ESKKLKEQLRALRKENA 77

[Close]

BLAST of CmoCh04G009520 vs. TAIR10
Match: AT4G21192.1 (AT4G21192.1 Cytochrome c oxidase biogenesis protein Cmc1-like)

HSP 1 Score: 137.9 bits (346), Expect = 2.7e-33
Identity = 62/75 (82.67%), Postives = 70/75 (93.33%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLT H+HPMC EIIEEFQKCH+DHPIGKF GECT+LK+KLDRCFRQEKA+KRK NFE
Sbjct: 1  MHPPLTPHRHPMCLEIIEEFQKCHIDHPIGKFFGECTELKVKLDRCFRQEKAVKRKVNFE 60

Query: 61 QSKKMKERLDALRKE 76
          QSKK++ERL A+RKE
Sbjct: 61 QSKKLQERLKAIRKE 75

[Close]

BLAST of CmoCh04G009520 vs. NCBI nr
Match: gi|449431882|ref|XP_004133729.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 5.4e-36
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHP+GKF GECTDLKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

[Close]

BLAST of CmoCh04G009520 vs. NCBI nr
Match: gi|659102624|ref|XP_008452227.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 73/78 (93.59%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLHKHPMCAEIIE+FQKCH+DHP+GKF GECTDLKIKLD+CFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHKHPMCAEIIEQFQKCHIDHPVGKFFGECTDLKIKLDQCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENAL 79
          QSKKMKERLDALRKENAL
Sbjct: 61 QSKKMKERLDALRKENAL 78

[Close]

BLAST of CmoCh04G009520 vs. NCBI nr
Match: gi|568833626|ref|XP_006470986.1| (PREDICTED: COX assembly mitochondrial protein 2 homolog [Citrus sinensis])

HSP 1 Score: 147.9 bits (372), Expect = 7.4e-33
Identity = 68/77 (88.31%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHLDHPIGKF G+CT+LKIKLDRCFRQEKA+KRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL++LRKE A
Sbjct: 61 QSKKLKERLESLRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. NCBI nr
Match: gi|728827994|gb|KHG07448.1| (putative C16orf61 [Gossypium arboreum])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHL+HPI KF GECT+LKIKLDRCFRQEKALKRKANFE
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLEHPIAKFFGECTELKIKLDRCFRQEKALKRKANFE 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL ALRKE A
Sbjct: 61 QSKKLKERLQALRKETA 77

[Close]

BLAST of CmoCh04G009520 vs. NCBI nr
Match: gi|567877883|ref|XP_006431500.1| (hypothetical protein CICLE_v10002996mg [Citrus clementina])

HSP 1 Score: 146.7 bits (369), Expect = 1.6e-32
Identity = 67/77 (87.01%), Postives = 75/77 (97.40%), Query Frame = 1


Query: 1  MHPPLTLHKHPMCAEIIEEFQKCHLDHPIGKFLGECTDLKIKLDRCFRQEKALKRKANFE 60
          MHPPLTLH+HPMCAEIIEEFQKCHLDHPIGKF G+CT+LKIKLDRCFRQEKA+KRKANF+
Sbjct: 1  MHPPLTLHRHPMCAEIIEEFQKCHLDHPIGKFFGDCTELKIKLDRCFRQEKAVKRKANFQ 60

Query: 61 QSKKMKERLDALRKENA 78
          QSKK+KERL++LRKE A
Sbjct: 61 QSKKLKERLESLRKETA 77

The following BLAST results are available for this feature:

BLAST of CmoCh04G009520 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G009520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067DR89_CITSI	5.1e-33	88.31	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034791mg PE=4 SV=1	[more]
A0A0B0MZA9_GOSAR	1.1e-32	89.61	Putative C16orf61 OS=Gossypium arboreum GN=F383_34011 PE=4 SV=1	[more]
V4T064_9ROSI	1.1e-32	87.01	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002996mg PE=4 SV=1	[more]
A0A0D2NG26_GOSRA	2.5e-32	89.61	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G000700 PE=4 SV=1	[more]
A0A0B2PM56_GLYSO	3.3e-32	87.01	Uncharacterized protein OS=Glycine soja GN=glysoja_032174 PE=4 SV=1	[more]

BLAST of CmoCh04G009520 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21192.1	2.7e-33	82.67	Cytochrome c oxidase biogenesis protein Cmc1-like	[more]

BLAST of CmoCh04G009520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449431882\|ref\|XP_004133729.1\|	5.4e-36	94.87	PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis sativus]	[more]
gi\|659102624\|ref\|XP_008452227.1\|	1.6e-35	93.59	PREDICTED: COX assembly mitochondrial protein 2 homolog [Cucumis melo]	[more]
gi\|568833626\|ref\|XP_006470986.1\|	7.4e-33	88.31	PREDICTED: COX assembly mitochondrial protein 2 homolog [Citrus sinensis]	[more]
gi\|728827994\|gb\|KHG07448.1\|	1.6e-32	89.61	putative C16orf61 [Gossypium arboreum]	[more]
gi\|567877883\|ref\|XP_006431500.1\|	1.6e-32	87.01	hypothetical protein CICLE_v10002996mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013892	Cyt_c_biogenesis_Cmc1-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G009520.1	CmoCh04G009520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013892	Cytochrome c oxidase biogenesis protein Cmc1-like	PFAM	PF08583	Cmc1	coord: 1..69 score: 6.6
None	No IPR available	PANTHER	PTHR22977	UPF0287 FAMILY	coord: 1..75 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G009520	Cucsa.114320	Cucumber (Gy14) v1	cgycmoB0273
CmoCh04G009520	CmaCh04G008890	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G009520	Cla011826	Watermelon (97103) v1	cmowmB674
CmoCh04G009520	Csa3G110700	Cucumber (Chinese Long) v2	cmocuB693
CmoCh04G009520	ClCG10G007340	Watermelon (Charleston Gray)	cmowcgB615
CmoCh04G009520	Lsi05G007220	Bottle gourd (USVL1VR-Ls)	cmolsiB680
CmoCh04G009520	Cp4.1LG01g08730	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G009520	MELO3C032219.2	Melon (DHL92) v3.6.1	cmomedB775
CmoCh04G009520	CsaV3_3G006580	Cucumber (Chinese Long) v3	cmocucB0822
CmoCh04G009520	Cla97C10G191030	Watermelon (97103) v2	cmowmbB689
CmoCh04G009520	Bhi11G000672	Wax gourd	cmowgoB0819
CmoCh04G009520	Carg00003	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G009520	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G009520	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G009520	Wild cucumber (PI 183967)	cmocpiB703
CmoCh04G009520	Melon (DHL92) v3.5.1	cmomeB680
CmoCh04G009520	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G009520	Cucumber (Gy14) v2	cgybcmoB393
CmoCh04G009520	Silver-seed gourd	carcmoB0763