CmoCh04G009040 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G009040
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(BHLH transcription factor) (DNA binding protein)
LocationCmo_Chr04 : 4555301 .. 4556534 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAAAAAAAAAATGGTGTTAGGTTTAGAATCGGCGGTGTTCCAAGAAGATAAGTTGATTGGTTGTGGATGGAAGAATGTGGAAGCAATGGAAGCAGGCAAAGTTGGTGGCGGAGGATTGAGGGCCACCGTTGCTCCAGTGGGGAAGCGATGGGGGCGTAGGGGGAAGATGGTGAAGAAGAGGGAGGAGATTGAGAAGCAAAGAATGGTACACATAGCGGTTGAACGCAATAGGAGAAAGCAAATGAATGAGTATCTGTGTGTGCTGAGATCCATGATGCCTTCTTCTTACACCCAAAGGGTAATCCCATCATATCCCATCATGCCTTCTTCTTCCATTGCATCATAATGATAAGAAAAGGTTTTAATTTGCAGGGAGATCAGGCGTCAATCGTGGGAGGGACCATCAAGTTCGTGAAGGAGTTAGAACAGCTTGTGCAGTGGTTAGAGGGAAAGAAGCAAAGGCATGAACATATTTGTTATTCCGGCCAGGATTATTCAGGGGAATCGAAGGTGGAGGTGAGGGTGATAGAGAGGTACGCCAATATAAAAATGAGGGCGGAGAATCGGCCGAAACAGCTTCTAAAAGTGGCGCTGGAATTGCACTCTCTTCAACTTTTGATTCTTCACGTCAACGTCACTACCATTCGCCAAATGGTTTTTTATTGTTTCAGCGTGAAGGTAAAGAGATGAGAGTATTAAGTTTTTAAATATGAGATGGGAATCTTACTTTGGCCTCAATCATTACTTTTTTTTTTTTCTTTTTTTTTTTTAATTTAAAATAATTTTGGTAATAGTTGATTGAATTATTTGAATATGGCAGATTGAAGATGAATGTGAACTGAACACTGTGGGTGAGATTACTGCAGCTGTCAATCAAATGTTCCAACGGATCCTTGTGGAAAAGGGTGACTAGTTTCGATGCCAATATATAATTTCAATGTTATAGCCTTTTCTTTAAGTTTTAATCTCATTAATGCCCGTTTTGCAACGCTCTAATGATGATTTCCAATATTAAGACACTAGCTCTTTTCCATTATTTTTTTTTAAAATTTTACTACATTGTTCTTCTTGATTTTATCTTACCATTTGATATTGAATAATATTTATTTTTAGTTTAAATTTGTCGTGATAAATTTAAACTTTTGATAATGAATATATAAACTCTAATCGAAAATAACGTCTATTTAACTTATTATTATAAAAAAAAAAACTACCATCTCC

mRNA sequence

AAAAAAAAAAAAAAAAAAAAAAAATGGTGTTAGGTTTAGAATCGGCGGTGTTCCAAGAAGATAAGTTGATTGGTTGTGGATGGAAGAATGTGGAAGCAATGGAAGCAGGCAAAGTTGGTGGCGGAGGATTGAGGGCCACCGTTGCTCCAGTGGGGAAGCGATGGGGGCGTAGGGGGAAGATGGTGAAGAAGAGGGAGGAGATTGAGAAGCAAAGAATGGTACACATAGCGGTTGAACGCAATAGGAGAAAGCAAATGAATGAGTATCTGTGTGTGCTGAGATCCATGATGCCTTCTTCTTACACCCAAAGGGGAGATCAGGCGTCAATCGTGGGAGGGACCATCAAGTTCGTGAAGGAGTTAGAACAGCTTGTGCAGTGGTTAGAGGGAAAGAAGCAAAGGCATGAACATATTTGTTATTCCGGCCAGGATTATTCAGGGGAATCGAAGGTGGAGGTGAGGGTGATAGAGAGGTACGCCAATATAAAAATGAGGGCGGAGAATCGGCCGAAACAGCTTCTAAAAGTGGCGCTGGAATTGCACTCTCTTCAACTTTTGATTCTTCACGTCAACGTCACTACCATTCGCCAAATGGTTTTTTATTGTTTCAGCGTGAAGATTGAAGATGAATGTGAACTGAACACTGTGGGTGAGATTACTGCAGCTGTCAATCAAATGTTCCAACGGATCCTTGTGGAAAAGGGTGACTAGTTTCGATGCCAATATATAATTTCAATGTTATAGCCTTTTCTTTAAGTTTTAATCTCATTAATGCCCGTTTTGCAACGCTCTAATGATGATTTCCAATATTAAGACACTAGCTCTTTTCCATTATTTTTTTTTAAAATTTTACTACATTGTTCTTCTTGATTTTATCTTACCATTTGATATTGAATAATATTTATTTTTAGTTTAAATTTGTCGTGATAAATTTAAACTTTTGATAATGAATATATAAACTCTAATCGAAAATAACGTCTATTTAACTTATTATTATAAAAAAAAAAACTACCATCTCC

Coding sequence (CDS)

ATGGTGTTAGGTTTAGAATCGGCGGTGTTCCAAGAAGATAAGTTGATTGGTTGTGGATGGAAGAATGTGGAAGCAATGGAAGCAGGCAAAGTTGGTGGCGGAGGATTGAGGGCCACCGTTGCTCCAGTGGGGAAGCGATGGGGGCGTAGGGGGAAGATGGTGAAGAAGAGGGAGGAGATTGAGAAGCAAAGAATGGTACACATAGCGGTTGAACGCAATAGGAGAAAGCAAATGAATGAGTATCTGTGTGTGCTGAGATCCATGATGCCTTCTTCTTACACCCAAAGGGGAGATCAGGCGTCAATCGTGGGAGGGACCATCAAGTTCGTGAAGGAGTTAGAACAGCTTGTGCAGTGGTTAGAGGGAAAGAAGCAAAGGCATGAACATATTTGTTATTCCGGCCAGGATTATTCAGGGGAATCGAAGGTGGAGGTGAGGGTGATAGAGAGGTACGCCAATATAAAAATGAGGGCGGAGAATCGGCCGAAACAGCTTCTAAAAGTGGCGCTGGAATTGCACTCTCTTCAACTTTTGATTCTTCACGTCAACGTCACTACCATTCGCCAAATGGTTTTTTATTGTTTCAGCGTGAAGATTGAAGATGAATGTGAACTGAACACTGTGGGTGAGATTACTGCAGCTGTCAATCAAATGTTCCAACGGATCCTTGTGGAAAAGGGTGACTAG
BLAST of CmoCh04G009040 vs. Swiss-Prot
Match: BH096_ARATH (Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.5e-38
Identity = 97/210 (46.19%), Postives = 129/210 (61.43%), Query Frame = 1

Query: 44  GKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIV 103
           G+R  RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MP  Y QRGDQASIV
Sbjct: 104 GRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIV 163

Query: 104 GGTIKFVKELEQLVQWLEGKKQRHEHICYSGQD---------------------YS---- 163
           GG I ++KELE  +Q +E   +       +G D                     YS    
Sbjct: 164 GGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRPT 223

Query: 164 ------GESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVF 223
                 G +++EV ++E +A++K+ A+ RP+QLLK+   + SL+L +LH+NVTT    V 
Sbjct: 224 SAAAAEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVL 283

BLAST of CmoCh04G009040 vs. Swiss-Prot
Match: BH094_ARATH (Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 98/212 (46.23%), Postives = 127/212 (59.91%), Query Frame = 1

Query: 42  PVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQAS 101
           P  +R  RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MPSSY QRGDQAS
Sbjct: 92  PQHRRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQAS 151

Query: 102 IVGGTIKFVKELEQ----------LVQWLEGKKQRHEHIC------YSGQDYSGES---- 161
           IVGG I +VKELE                +G K     +       +S   YS +S    
Sbjct: 152 IVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDV 211

Query: 162 --------KVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFY 221
                   ++EV V E +ANIK+  + +P+QLLK+   L SL+L +LH+NVTT+   + Y
Sbjct: 212 PESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILY 271

Query: 222 CFSVKIEDECELNTVGEITAAVNQMFQRILVE 226
             SV++E+  +LNTV +I  A+NQ  +RI  E
Sbjct: 272 SISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303

BLAST of CmoCh04G009040 vs. Swiss-Prot
Match: BH067_ARATH (Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 8.7e-34
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  R+ K  K  EEIE QR+ HIAVERNRR+QMNE++  LR+++P SY QRGDQASIVG
Sbjct: 158 KRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVG 217

Query: 105 GTIKFVKELEQLVQWLEGKKQRHEH--------------------ICYSGQDYSGESKVE 164
           G I +VK LEQ++Q LE +K+  +                     +  + +D +   K+E
Sbjct: 218 GAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHLSGISSNDLWTTLEDQTCIPKIE 277

Query: 165 VRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT-IRQMVFYCFSVKIEDEC 220
             VI+ + ++K++ E +  QLLK  + L  L+L +LH+N+TT     V Y F++K+EDEC
Sbjct: 278 ATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDEC 337

BLAST of CmoCh04G009040 vs. Swiss-Prot
Match: BH070_ARATH (Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.3e-33
Identity = 88/197 (44.67%), Postives = 119/197 (60.41%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  RR K  K  EEIE QRM HIAVERNRR+QMN +L  LRS++PSSY QRGDQASIVG
Sbjct: 173 KRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVG 232

Query: 105 GTIKFVKELEQLVQWLEGKKQRHEH---------------------ICYSGQDYSGESKV 164
           G I FVK LEQ +Q LE +K+  +                         + ++ S + K+
Sbjct: 233 GAIDFVKILEQQLQSLEAQKRSQQSDDNKEQIPEDNSLRNISSNKLRASNKEEQSSKLKI 292

Query: 165 EVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT-IRQMVFYCFSVKIEDE 220
           E  VIE + N+K++   +  QLL+  + L  L+  +LH+N+T+     V Y F++K+EDE
Sbjct: 293 EATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDE 352

BLAST of CmoCh04G009040 vs. Swiss-Prot
Match: BH057_ARATH (Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 83/209 (39.71%), Postives = 124/209 (59.33%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  +R +  K ++E+E QRM HIAVERNRR+QMNE+L  LRS+MP S+ QRGDQASIVG
Sbjct: 95  KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVG 154

Query: 105 GTIKFVKELEQLVQWLEGKKQR-------HEHICYSGQDYS------------------- 164
           G I F+KELEQL+Q LE +K++           C S    +                   
Sbjct: 155 GAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTA 214

Query: 165 -----GESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFY 223
                  ++VE  VI+ + ++K+R +   +Q+LK  + +  L+L ILH+ +++    V Y
Sbjct: 215 RFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIY 274

BLAST of CmoCh04G009040 vs. TrEMBL
Match: V7ARK2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G033800g PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-43
Identity = 105/205 (51.22%), Postives = 133/205 (64.88%), Query Frame = 1

Query: 38  ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRG 97
           AT     +R  RR K  K +EEIE QR  HIAVERNRRKQMNEYL VLRS+MPSSY QRG
Sbjct: 95  ATATTTSRRKRRRTKSEKNKEEIENQRTTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRG 154

Query: 98  DQASIVGGTIKFVKELEQLVQWLEGKKQRH----------EHICYSGQDYSGESK----- 157
           DQASI+GG I FVKELEQ++Q +EG+K+R           E   +      G  K     
Sbjct: 155 DQASIIGGAINFVKELEQVLQSMEGEKRRKQGEENVGAFAEFFTFPQYTTRGTQKQEQKE 214

Query: 158 -----VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFYCFSV 217
                +EV +++ +AN+K+ ++ +P  L+K+ L L SL+L ILH+NVTT+  MV Y  SV
Sbjct: 215 WAVADIEVTMVDSHANLKILSKKQPSHLMKIVLGLQSLRLTILHLNVTTLHHMVLYSISV 274

Query: 218 KIEDECELNTVGEITAAVNQMFQRI 223
           K+E+ CELNTV EI AAVNQ+   I
Sbjct: 275 KVEEGCELNTVDEIAAAVNQLLGTI 299

BLAST of CmoCh04G009040 vs. TrEMBL
Match: A0A0S3RD31_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G117000 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.2e-43
Identity = 105/212 (49.53%), Postives = 136/212 (64.15%), Query Frame = 1

Query: 38  ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRG 97
           AT     +R  RR K  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MPSSY QRG
Sbjct: 98  ATATTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRG 157

Query: 98  DQASIVGGTIKFVKELEQLVQWLEGKKQ----RHEHICYSG------------------- 157
           DQASI+GG I FVKELEQ++Q +EG+K+      E++  +G                   
Sbjct: 158 DQASIIGGAINFVKELEQVLQSMEGEKRRKQGEEENVGLNGWTTPFAEFFTFPQYTTRGN 217

Query: 158 ----QDYSGESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQM 217
               Q     + +EV +++ +AN+K+ A+ +P  L+K+ L L +L+L ILH+NVTT+  M
Sbjct: 218 QKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHM 277

Query: 218 VFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           V Y  SVK+E+ CELNTV EI AAVNQ+   I
Sbjct: 278 VLYSISVKVEEGCELNTVDEIAAAVNQLLGTI 309

BLAST of CmoCh04G009040 vs. TrEMBL
Match: A0A0L9UGA8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g194400 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.2e-43
Identity = 105/212 (49.53%), Postives = 136/212 (64.15%), Query Frame = 1

Query: 38  ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRG 97
           AT     +R  RR K  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MPSSY QRG
Sbjct: 98  ATATTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRG 157

Query: 98  DQASIVGGTIKFVKELEQLVQWLEGKKQ----RHEHICYSG------------------- 157
           DQASI+GG I FVKELEQ++Q +EG+K+      E++  +G                   
Sbjct: 158 DQASIIGGAINFVKELEQVLQSMEGEKRRKQGEEENVGLNGWTTPFAEFFTFPQYTTRGN 217

Query: 158 ----QDYSGESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQM 217
               Q     + +EV +++ +AN+K+ A+ +P  L+K+ L L +L+L ILH+NVTT+  M
Sbjct: 218 QKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHM 277

Query: 218 VFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           V Y  SVK+E+ CELNTV EI AAVNQ+   I
Sbjct: 278 VLYSISVKVEEGCELNTVDEIAAAVNQLLGTI 309

BLAST of CmoCh04G009040 vs. TrEMBL
Match: I1JVA4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G098400 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-42
Identity = 105/216 (48.61%), Postives = 136/216 (62.96%), Query Frame = 1

Query: 36  LRATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQ 95
           + ATV    +R  RR K  K  EEIE QR  HIAVERNRRKQMNEYL VLRS+MPSSY Q
Sbjct: 103 VEATVTATSRRKRRRTKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMPSSYVQ 162

Query: 96  RGDQASIVGGTIKFVKELEQLVQWLEGKKQRHE-----------------------HICY 155
           RGDQASI+GG I FVKELEQL+Q +EG+K+ ++                           
Sbjct: 163 RGDQASIIGGAINFVKELEQLLQSMEGQKRTNQAQENVVGLNGSTTTPFAEFFTFPQYTT 222

Query: 156 SGQDYSGESK------VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT 215
            G+  + E K      +EV +++ +AN+K+ ++ +P QL+K+ + L SL L ILH+NV+T
Sbjct: 223 RGRTMAQEQKQWAVADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLMLSILHLNVST 282

Query: 216 IRQMVFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           +  MV Y  SVK+ED C LNTV EI AAVNQ+ + I
Sbjct: 283 LDDMVLYSISVKVEDGCRLNTVDEIAAAVNQLLRTI 318

BLAST of CmoCh04G009040 vs. TrEMBL
Match: B9RF23_RICCO (DNA binding protein, putative OS=Ricinus communis GN=RCOM_1430620 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.6e-42
Identity = 108/223 (48.43%), Postives = 136/223 (60.99%), Query Frame = 1

Query: 39  TVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGD 98
           ++ P  +   RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MP SY QRGD
Sbjct: 136 SIMPAARAKRRRSRSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGD 195

Query: 99  QASIVGGTIKFVKELEQLVQWL------EGKKQRHEHIC----------YSGQDYSGESK 158
           QASI+GG I FVKELEQ +Q L      +GK    EH            ++   YS  S 
Sbjct: 196 QASIIGGAINFVKELEQRLQLLGGHKEIKGKSDHGEHHASNNPLPFSEFFTFPQYSTTST 255

Query: 159 -----------------------VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLI 218
                                  +EV ++E +AN+K+R++ RPKQLLKV   LH+L+L I
Sbjct: 256 RSDNSVAAANETMSSATQSTIADIEVTMVESHANLKIRSKRRPKQLLKVVSGLHTLRLTI 315

Query: 219 LHVNVTTIRQMVFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           LH+NVTT  Q+V YC SVK+ED+C+L++V EI  AV QM  RI
Sbjct: 316 LHLNVTTTEQIVLYCLSVKVEDDCKLSSVDEIATAVYQMLGRI 358

BLAST of CmoCh04G009040 vs. TAIR10
Match: AT1G72210.1 (AT1G72210.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 159.5 bits (402), Expect = 2.5e-39
Identity = 97/210 (46.19%), Postives = 129/210 (61.43%), Query Frame = 1

Query: 44  GKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIV 103
           G+R  RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MP  Y QRGDQASIV
Sbjct: 104 GRRKRRRTRSSKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIV 163

Query: 104 GGTIKFVKELEQLVQWLEGKKQRHEHICYSGQD---------------------YS---- 163
           GG I ++KELE  +Q +E   +       +G D                     YS    
Sbjct: 164 GGAINYLKELEHHLQSMEPPVKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYSNRPT 223

Query: 164 ------GESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVF 223
                 G +++EV ++E +A++K+ A+ RP+QLLK+   + SL+L +LH+NVTT    V 
Sbjct: 224 SAAAAEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVL 283

BLAST of CmoCh04G009040 vs. TAIR10
Match: AT1G22490.1 (AT1G22490.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 157.9 bits (398), Expect = 7.3e-39
Identity = 98/212 (46.23%), Postives = 127/212 (59.91%), Query Frame = 1

Query: 42  PVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQAS 101
           P  +R  RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MPSSY QRGDQAS
Sbjct: 92  PQHRRKRRRTRNCKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQAS 151

Query: 102 IVGGTIKFVKELEQ----------LVQWLEGKKQRHEHIC------YSGQDYSGES---- 161
           IVGG I +VKELE                +G K     +       +S   YS +S    
Sbjct: 152 IVGGAINYVKELEHILQSMEPKRTRTHDPKGDKTSTSSLVGPFTDFFSFPQYSTKSSSDV 211

Query: 162 --------KVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFY 221
                   ++EV V E +ANIK+  + +P+QLLK+   L SL+L +LH+NVTT+   + Y
Sbjct: 212 PESSSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILY 271

Query: 222 CFSVKIEDECELNTVGEITAAVNQMFQRILVE 226
             SV++E+  +LNTV +I  A+NQ  +RI  E
Sbjct: 272 SISVRVEEGSQLNTVDDIATALNQTIRRIQEE 303

BLAST of CmoCh04G009040 vs. TAIR10
Match: AT3G61950.1 (AT3G61950.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 4.9e-35
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  R+ K  K  EEIE QR+ HIAVERNRR+QMNE++  LR+++P SY QRGDQASIVG
Sbjct: 158 KRKRRKTKPSKNNEEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVG 217

Query: 105 GTIKFVKELEQLVQWLEGKKQRHEH--------------------ICYSGQDYSGESKVE 164
           G I +VK LEQ++Q LE +K+  +                     +  + +D +   K+E
Sbjct: 218 GAINYVKVLEQIIQSLESQKRTQQQSNSEVVENALNHLSGISSNDLWTTLEDQTCIPKIE 277

Query: 165 VRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT-IRQMVFYCFSVKIEDEC 220
             VI+ + ++K++ E +  QLLK  + L  L+L +LH+N+TT     V Y F++K+EDEC
Sbjct: 278 ATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYSFNLKMEDEC 337

BLAST of CmoCh04G009040 vs. TAIR10
Match: AT2G46810.1 (AT2G46810.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-34
Identity = 88/197 (44.67%), Postives = 119/197 (60.41%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  RR K  K  EEIE QRM HIAVERNRR+QMN +L  LRS++PSSY QRGDQASIVG
Sbjct: 173 KRKRRRTKPTKNIEEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVG 232

Query: 105 GTIKFVKELEQLVQWLEGKKQRHEH---------------------ICYSGQDYSGESKV 164
           G I FVK LEQ +Q LE +K+  +                         + ++ S + K+
Sbjct: 233 GAIDFVKILEQQLQSLEAQKRSQQSDDNKEQIPEDNSLRNISSNKLRASNKEEQSSKLKI 292

Query: 165 EVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT-IRQMVFYCFSVKIEDE 220
           E  VIE + N+K++   +  QLL+  + L  L+  +LH+N+T+     V Y F++K+EDE
Sbjct: 293 EATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSFNLKMEDE 352

BLAST of CmoCh04G009040 vs. TAIR10
Match: AT4G01460.1 (AT4G01460.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-34
Identity = 83/209 (39.71%), Postives = 124/209 (59.33%), Query Frame = 1

Query: 45  KRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGDQASIVG 104
           KR  +R +  K ++E+E QRM HIAVERNRR+QMNE+L  LRS+MP S+ QRGDQASIVG
Sbjct: 95  KRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVG 154

Query: 105 GTIKFVKELEQLVQWLEGKKQR-------HEHICYSGQDYS------------------- 164
           G I F+KELEQL+Q LE +K++           C S    +                   
Sbjct: 155 GAIDFIKELEQLLQSLEAEKRKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTA 214

Query: 165 -----GESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFY 223
                  ++VE  VI+ + ++K+R +   +Q+LK  + +  L+L ILH+ +++    V Y
Sbjct: 215 RFGGGDTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIY 274

BLAST of CmoCh04G009040 vs. NCBI nr
Match: gi|593268221|ref|XP_007136288.1| (hypothetical protein PHAVU_009G033800g [Phaseolus vulgaris])

HSP 1 Score: 184.1 bits (466), Expect = 2.7e-43
Identity = 105/205 (51.22%), Postives = 133/205 (64.88%), Query Frame = 1

Query: 38  ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRG 97
           AT     +R  RR K  K +EEIE QR  HIAVERNRRKQMNEYL VLRS+MPSSY QRG
Sbjct: 95  ATATTTSRRKRRRTKSEKNKEEIENQRTTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRG 154

Query: 98  DQASIVGGTIKFVKELEQLVQWLEGKKQRH----------EHICYSGQDYSGESK----- 157
           DQASI+GG I FVKELEQ++Q +EG+K+R           E   +      G  K     
Sbjct: 155 DQASIIGGAINFVKELEQVLQSMEGEKRRKQGEENVGAFAEFFTFPQYTTRGTQKQEQKE 214

Query: 158 -----VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQMVFYCFSV 217
                +EV +++ +AN+K+ ++ +P  L+K+ L L SL+L ILH+NVTT+  MV Y  SV
Sbjct: 215 WAVADIEVTMVDSHANLKILSKKQPSHLMKIVLGLQSLRLTILHLNVTTLHHMVLYSISV 274

Query: 218 KIEDECELNTVGEITAAVNQMFQRI 223
           K+E+ CELNTV EI AAVNQ+   I
Sbjct: 275 KVEEGCELNTVDEIAAAVNQLLGTI 299

BLAST of CmoCh04G009040 vs. NCBI nr
Match: gi|920698521|gb|KOM41746.1| (hypothetical protein LR48_Vigan04g194400 [Vigna angularis])

HSP 1 Score: 183.0 bits (463), Expect = 6.0e-43
Identity = 105/212 (49.53%), Postives = 136/212 (64.15%), Query Frame = 1

Query: 38  ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRG 97
           AT     +R  RR K  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MPSSY QRG
Sbjct: 98  ATATTTTRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRG 157

Query: 98  DQASIVGGTIKFVKELEQLVQWLEGKKQ----RHEHICYSG------------------- 157
           DQASI+GG I FVKELEQ++Q +EG+K+      E++  +G                   
Sbjct: 158 DQASIIGGAINFVKELEQVLQSMEGEKRRKQGEEENVGLNGWTTPFAEFFTFPQYTTRGN 217

Query: 158 ----QDYSGESKVEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTTIRQM 217
               Q     + +EV +++ +AN+K+ A+ +P  L+K+ L L +L+L ILH+NVTT+  M
Sbjct: 218 QKQEQKQWAVADIEVTMVDSHANLKILAKKQPSHLMKIVLGLQTLRLTILHLNVTTLHHM 277

Query: 218 VFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           V Y  SVK+E+ CELNTV EI AAVNQ+   I
Sbjct: 278 VLYSISVKVEEGCELNTVDEIAAAVNQLLGTI 309

BLAST of CmoCh04G009040 vs. NCBI nr
Match: gi|719968875|ref|XP_010266731.1| (PREDICTED: transcription factor bHLH94-like [Nelumbo nucifera])

HSP 1 Score: 181.4 bits (459), Expect = 1.8e-42
Identity = 113/240 (47.08%), Postives = 142/240 (59.17%), Query Frame = 1

Query: 27  EAGKVGGGGLR---ATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLC 86
           + G   GGG     A  A  G+R  RR K  K +EE+E QRM HIAVERNRRKQMNEYL 
Sbjct: 86  DGGFFTGGGFSPVDAQAATSGRRKRRRTKSCKNKEEVENQRMTHIAVERNRRKQMNEYLA 145

Query: 87  VLRSMMPSSYTQRGDQASIVGGTIKFVKELEQLVQWLEGKKQRHEHI----------CYS 146
           VLRS+MP+SY QRGDQASI+GG I FVKELEQ +Q LE +K+  +             +S
Sbjct: 146 VLRSLMPASYVQRGDQASIIGGAINFVKELEQHLQSLEAQKRIKQQSDAGFSSPFADFFS 205

Query: 147 GQDYSGESK----------------------------VEVRVIERYANIKMRAENRPKQL 206
              YS  S                             +EV ++E +AN+K+ ++ RPKQL
Sbjct: 206 FPQYSSSSTHCNNPAGSASSAAGSNESTAENRSAIADIEVTMVESHANLKVLSKRRPKQL 265

Query: 207 LKVALELHSLQLLILHVNVTTIRQMVFYCFSVKIEDECELNTVGEITAAVNQMFQRILVE 226
           LK+    H+L+L ILH+NVT++ QMV Y FSVK+EDEC+L +V EI  AV QM  RI  E
Sbjct: 266 LKMVAGFHTLRLTILHLNVTSVDQMVLYSFSVKVEDECQLTSVDEIATAVYQMLGRIQEE 325

BLAST of CmoCh04G009040 vs. NCBI nr
Match: gi|255542558|ref|XP_002512342.1| (PREDICTED: transcription factor bHLH94 [Ricinus communis])

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 108/223 (48.43%), Postives = 136/223 (60.99%), Query Frame = 1

Query: 39  TVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQRGD 98
           ++ P  +   RR +  K +EEIE QRM HIAVERNRRKQMNEYL VLRS+MP SY QRGD
Sbjct: 136 SIMPAARAKRRRSRSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPESYVQRGD 195

Query: 99  QASIVGGTIKFVKELEQLVQWL------EGKKQRHEHIC----------YSGQDYSGESK 158
           QASI+GG I FVKELEQ +Q L      +GK    EH            ++   YS  S 
Sbjct: 196 QASIIGGAINFVKELEQRLQLLGGHKEIKGKSDHGEHHASNNPLPFSEFFTFPQYSTTST 255

Query: 159 -----------------------VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLI 218
                                  +EV ++E +AN+K+R++ RPKQLLKV   LH+L+L I
Sbjct: 256 RSDNSVAAANETMSSATQSTIADIEVTMVESHANLKIRSKRRPKQLLKVVSGLHTLRLTI 315

Query: 219 LHVNVTTIRQMVFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           LH+NVTT  Q+V YC SVK+ED+C+L++V EI  AV QM  RI
Sbjct: 316 LHLNVTTTEQIVLYCLSVKVEDDCKLSSVDEIATAVYQMLGRI 358

BLAST of CmoCh04G009040 vs. NCBI nr
Match: gi|356508057|ref|XP_003522778.1| (PREDICTED: transcription factor bHLH94 [Glycine max])

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 105/216 (48.61%), Postives = 136/216 (62.96%), Query Frame = 1

Query: 36  LRATVAPVGKRWGRRGKMVKKREEIEKQRMVHIAVERNRRKQMNEYLCVLRSMMPSSYTQ 95
           + ATV    +R  RR K  K  EEIE QR  HIAVERNRRKQMNEYL VLRS+MPSSY Q
Sbjct: 103 VEATVTATSRRKRRRTKSAKNTEEIENQRRTHIAVERNRRKQMNEYLAVLRSLMPSSYVQ 162

Query: 96  RGDQASIVGGTIKFVKELEQLVQWLEGKKQRHE-----------------------HICY 155
           RGDQASI+GG I FVKELEQL+Q +EG+K+ ++                           
Sbjct: 163 RGDQASIIGGAINFVKELEQLLQSMEGQKRTNQAQENVVGLNGSTTTPFAEFFTFPQYTT 222

Query: 156 SGQDYSGESK------VEVRVIERYANIKMRAENRPKQLLKVALELHSLQLLILHVNVTT 215
            G+  + E K      +EV +++ +AN+K+ ++ +P QL+K+ + L SL L ILH+NV+T
Sbjct: 223 RGRTMAQEQKQWAVADIEVTMVDSHANLKVLSKKQPGQLMKIVVGLQSLMLSILHLNVST 282

Query: 216 IRQMVFYCFSVKIEDECELNTVGEITAAVNQMFQRI 223
           +  MV Y  SVK+ED C LNTV EI AAVNQ+ + I
Sbjct: 283 LDDMVLYSISVKVEDGCRLNTVDEIAAAVNQLLRTI 318

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BH096_ARATH4.5e-3846.19Transcription factor bHLH96 OS=Arabidopsis thaliana GN=BHLH96 PE=2 SV=1[more]
BH094_ARATH1.3e-3746.23Transcription factor bHLH94 OS=Arabidopsis thaliana GN=BHLH94 PE=2 SV=2[more]
BH067_ARATH8.7e-3443.37Transcription factor bHLH67 OS=Arabidopsis thaliana GN=BHLH67 PE=2 SV=1[more]
BH070_ARATH3.3e-3344.67Transcription factor bHLH70 OS=Arabidopsis thaliana GN=BHLH70 PE=2 SV=1[more]
BH057_ARATH1.3e-3239.71Transcription factor bHLH57 OS=Arabidopsis thaliana GN=BHLH57 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
V7ARK2_PHAVU1.9e-4351.22Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G033800g PE=4 SV=1[more]
A0A0S3RD31_PHAAN4.2e-4349.53Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G117000 PE=... [more]
A0A0L9UGA8_PHAAN4.2e-4349.53Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g194400 PE=4 SV=1[more]
I1JVA4_SOYBN1.6e-4248.61Uncharacterized protein OS=Glycine max GN=GLYMA_04G098400 PE=4 SV=1[more]
B9RF23_RICCO1.6e-4248.43DNA binding protein, putative OS=Ricinus communis GN=RCOM_1430620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G72210.12.5e-3946.19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G22490.17.3e-3946.23 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G61950.14.9e-3543.37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT2G46810.11.9e-3444.67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G01460.17.1e-3439.71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
Match NameE-valueIdentityDescription
gi|593268221|ref|XP_007136288.1|2.7e-4351.22hypothetical protein PHAVU_009G033800g [Phaseolus vulgaris][more]
gi|920698521|gb|KOM41746.1|6.0e-4349.53hypothetical protein LR48_Vigan04g194400 [Vigna angularis][more]
gi|719968875|ref|XP_010266731.1|1.8e-4247.08PREDICTED: transcription factor bHLH94-like [Nelumbo nucifera][more]
gi|255542558|ref|XP_002512342.1|2.3e-4248.43PREDICTED: transcription factor bHLH94 [Ricinus communis][more]
gi|356508057|ref|XP_003522778.1|2.3e-4248.61PREDICTED: transcription factor bHLH94 [Glycine max][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G009040.1CmoCh04G009040.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 61..118
score: 9.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 63..114
score: 7.1
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 68..119
score: 8.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 62..113
score: 14
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 62..128
score: 8.11
NoneNo IPR availablePANTHERPTHR11969MAX DIMERIZATION, MADcoord: 44..222
score: 5.0
NoneNo IPR availablePANTHERPTHR11969:SF22TRANSCRIPTION FACTOR BHLH71-RELATEDcoord: 44..222
score: 5.0

The following gene(s) are paralogous to this gene:

None