CmoCh04G007830 (gene) Cucurbita moschata (Rifu)

NameCmoCh04G007830
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionShort-chain dehydrogenase TIC 32
LocationCmo_Chr04 : 3927134 .. 3929658 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGTGAGAGAACAACCATAAAGTAGTGTACCCAAGGTTGGGGGTAGGTATGGATGGTCAGATTTGCCACTCGTGGTATAACTAGCTAGTAGACGCTCCCTGATGTGTCTCGAGGAGAACAAGATGGTAGTGGGAGACCAGATTGTAACGCCTGAAAGAGGGGTTATACGAAGCTAGAAGATTCTTATACAATACTCGATGGAGGTATTATACAGGAGAAGACTAAGAGGGGTACTATGAGATGGTACAATCGTGAGCACACAAGTTTTAATGTATTGAATGAGGGAATTCTGCTCGAGGACTCAGTGACAACCTGGCCCACATTATCAATCTAGCCTGGAATGACACCCCGTCTAGAATGGCAATGAGTAAGGAGATGGTTGCATGCCACTAGGAGTAGTCGATAACACTAAAAGTGTCCCACTAAGAGGAGAATTATGCCCGACAAGATGTAGGATGCCATGGATGGCAGCATTGCCTTGAAAATGAAAAGTTAAACTCAGTCCTGGTTAAACTCATTTGATAGGCACGACACAAGAAGTTGTTATCTATGCCCTTGTAATGAGAGAAGAGATTAAACCTAACCACAGGTTCATGGGTTTGGGTCAATCTTCGTGCTTGGCATGGGAATATAGAGGCAAAAGTGATGTGTACGACAATAAATATAGTACCATGGACAAACGGTTGAGCTTGGTACTAAAGATTGAGGGTAAGACATATAAATGAACGGCTTCACCACCTGATGTGGTGTGACATGTCGACATGTGAATATGGAATTGGATAGGCAACGAACTCCTGGTGATCAAATTGAGCTGTGCGGTCGTGGGAGGGACCCCTAGATTGAGTCTTTTCCTTTTATTTTGCTTTTAATATTATTTACCTTGAAACTTAAGCTATATTATAACTACTTTTGATGTTGACTCCACGAAATATGTCAGTTTAAAGGCATGTTTTATTTTTCTCCTTGCGTTTCTTTGTTTTACAAAATTGAAAAAAATTTCCATCCTTTTTACCTTTCATTGTGTCCACGTGATGATCTATGATTCGAAACATCAAAAAGCAGGTTACAGTTTCCATTGTCTCATCAATGGTAGCTTTCTCGTTCGGTAACATGTATAAGGAAAACCTTTATATTTCGCATCTACTTGGTGAAAAAAATTTGAAGGGTCATATGATCTACTTAGAGAAGGACTATCTTCAATCACTTGAAAAGCTTTGCTGTTTCATTCCTTCTACATCCTTTATGCAGGCATATTTAGTTTGAGGATGTGATTTCTGAACAAATATAAACATCTACCTACCCATCTTATTAATTATGCATTCACATGTTTCTTTACTTTTTCCATTTTCCTGCTTATATTATCACGCTCATGAGTTTACTATCTCTGTGTATATCGACTTATTCAGTAGGTATTTTAGTTCTTGATTTCACCCAATTTTGTTGAGGACTATTTACTTAGTCTCTTTCAGGTGGGTTTTTATGTGCATAAAGTTTGATCATGTAGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGTAGTTGGCCAAGAAACTGTGGGATTTCAGCGTGGAACCAACCAGTCCAAAATAATTTGAATCTAATAGAAGCCTTTTGTTACTCTTAGCTTCTCATCTCAGACTTTATGTTATTGATATATGGACTGTTAAATGGTGGAAGTAGATGTATCATTATTTTTAGTTTCAAGTGCCCCTTTGAGCCTATACAAACAATTACTGAGCACAAGTTTGTTATACTGTGTAACAAATACAATAGTGTTTTTGTAGATTTCAGTCCAAAAGTGTGACAAAAGTATTTTAAACACCTATTCTGGATAAATAATTCACAACCAGCTCATGTAAAAGCTTTAGAAGATAATTATGAATATAGTTACTTTTTTCTTTTTCATTTTCTTATAAATAAACTCCAGCAACATGTTGCCCTTGGGAACCAGAGCAGTGTGTTTGTGTACTGGTGCTGTAATTCTTATTCTGTTTGCAGGTCATCCATTTCATACAATGATGCATGTCGATTAGACAGTTCTGCAATTTTTGGGTAGCCCAACCCAATGGATTCTCAACCTTTTTTTCTTTTTTCTCGTGTTTTAATTCTAATTAATTCAAGATCGACAAAAGAAACGCTGTCAAAAGATAAAAAACAATTTTTATTACCATATTTTCACACTTCCAATTTCTACAGAATACTAATAGCTGTTACAATTCAAGTGAGGAGCCACTACTGTATGTTAATAGGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG

mRNA sequence

ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG

Coding sequence (CDS)

ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG
BLAST of CmoCh04G007830 vs. Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           + GAAT CYVAL+PQVKGVSGEYF D+N+   T H K++
Sbjct: 261 QQGAATTCYVALHPQVKGVSGEYFSDSNVYKTTPHGKDV 299

BLAST of CmoCh04G007830 vs. Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGP 47
           GAAT CYVALNPQV GVSGEYF D+NIA P
Sbjct: 263 GAATTCYVALNPQVAGVSGEYFQDSNIAKP 292

BLAST of CmoCh04G007830 vs. TrEMBL
Match: A0A0A0KUV5_CUCSA (Short-chain dehydrogenase OS=Cucumis sativus GN=Csa_4G047990 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1

Query: 1   MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           +AK VL++ +      GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Sbjct: 251 VAKYVLKNVQQ-----GAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDM 298

BLAST of CmoCh04G007830 vs. TrEMBL
Match: A0A0C9RTF0_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_13881_1092 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1

Query: 13  EYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           + + GA+TQCY+ALNP+VKGV+GEYF DNNIA P N+A++
Sbjct: 259 DIRQGASTQCYIALNPKVKGVTGEYFADNNIAKPNNYARD 298

BLAST of CmoCh04G007830 vs. TrEMBL
Match: M1BAI8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402015792 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           + GAAT CY+ALNPQVKGVSGEYF DNN+A P+  A+NM
Sbjct: 260 QQGAATTCYIALNPQVKGVSGEYFQDNNLATPSKKARNM 298

BLAST of CmoCh04G007830 vs. TrEMBL
Match: I3SM28_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-08
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           + GAATQCYVAL+PQVKG+SGEYF+D+N A PTN AK+
Sbjct: 103 QQGAATQCYVALHPQVKGISGEYFMDSNTASPTNLAKD 140

BLAST of CmoCh04G007830 vs. TrEMBL
Match: I3S3J4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.8e-08
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           + GAATQCYVAL+PQVKG+SGEYF+D+N A PTN AK+
Sbjct: 260 QQGAATQCYVALHPQVKGISGEYFMDSNTASPTNLAKD 297

BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G23430.2 (AT4G23430.2 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.0e-08
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGP 47
           GAAT CYVALNPQV GVSGEYF D+NIA P
Sbjct: 263 GAATTCYVALNPQVAGVSGEYFQDSNIAKP 292

BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G11410.1 (AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           GAAT CY AL+PQ KGVSGEY +DNNI+ P +  K+
Sbjct: 262 GAATTCYAALHPQAKGVSGEYLMDNNISDPNSQGKD 297

BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G23420.3 (AT4G23420.3 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           GAAT CYVALNPQV GV+GEYF D+NIA P    K+
Sbjct: 280 GAATTCYVALNPQVAGVTGEYFSDSNIAKPIELVKD 315

BLAST of CmoCh04G007830 vs. TAIR10
Match: AT2G37540.1 (AT2G37540.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           GAAT CYVAL+P ++GV+G+YF D NI  P+  A N
Sbjct: 266 GAATTCYVALHPDLEGVTGKYFGDCNIVAPSKFATN 301

BLAST of CmoCh04G007830 vs. TAIR10
Match: AT5G02540.1 (AT5G02540.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06
Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1

Query: 17  GAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           GAAT CYVAL+P VKGV+G+YF D N   P+  A++
Sbjct: 266 GAATTCYVALHPSVKGVTGKYFADCNEVTPSKLARD 301

BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|449457572|ref|XP_004146522.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11
Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1

Query: 1   MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           +AK VL++ +      GAATQCYVALNPQVKGVSGEYFVD+NIA PTNHAK+M
Sbjct: 251 VAKYVLKNVQQ-----GAATQCYVALNPQVKGVSGEYFVDSNIANPTNHAKDM 298

BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|659102252|ref|XP_008452031.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo])

HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1

Query: 1   MAKVVLEDKEDDEYKMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           +AK VL++ +      GAATQCYVALNPQVKGVSGEYFVD+NIA PT HAK+M
Sbjct: 251 VAKFVLKNVQQ-----GAATQCYVALNPQVKGVSGEYFVDSNIANPTKHAKDM 298

BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|565374678|ref|XP_006353883.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Solanum tuberosum])

HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07
Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKNM 54
           + GAAT CY+ALNPQVKGVSGEYF DNN+A P+  A+NM
Sbjct: 260 QQGAATTCYIALNPQVKGVSGEYFQDNNLATPSKKARNM 298

BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|1009156147|ref|XP_015896091.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           + GAATQCYVALNPQVKGVSGEYF+D+N A P+N AK+
Sbjct: 260 QQGAATQCYVALNPQVKGVSGEYFMDSNKANPSNLAKD 297

BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|388493540|gb|AFK34836.1| (unknown [Lotus japonicus])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1

Query: 15  KMGAATQCYVALNPQVKGVSGEYFVDNNIAGPTNHAKN 53
           + GAATQCYVAL+PQVKG+SGEYF+D+N A PTN AK+
Sbjct: 260 QQGAATQCYVALHPQVKGISGEYFMDSNTASPTNLAKD 297

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TIC32_PEA1.8e-0764.10Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 S... [more]
TIC32_ARATH5.3e-0783.33Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32... [more]
Match NameE-valueIdentityDescription
A0A0A0KUV5_CUCSA2.5e-1171.70Short-chain dehydrogenase OS=Cucumis sativus GN=Csa_4G047990 PE=4 SV=1[more]
A0A0C9RTF0_9SPER7.5e-0865.00TSA: Wollemia nobilis Ref_Wollemi_Transcript_13881_1092 transcribed RNA sequence... [more]
M1BAI8_SOLTU7.5e-0871.79Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402015792 PE=3 SV=1[more]
I3SM28_LOTJA9.8e-0873.68Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
I3S3J4_LOTJA9.8e-0873.68Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT4G23430.23.0e-0883.33 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT4G11410.13.9e-0863.89 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT4G23420.35.1e-0869.44 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT2G37540.12.8e-0658.33 NAD(P)-binding Rossmann-fold superfamily protein[more]
AT5G02540.16.2e-0658.33 NAD(P)-binding Rossmann-fold superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449457572|ref|XP_004146522.1|3.6e-1171.70PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus][more]
gi|659102252|ref|XP_008452031.1|1.8e-1069.81PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo][more]
gi|565374678|ref|XP_006353883.1|1.1e-0771.79PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Solanum tuberos... [more]
gi|1009156147|ref|XP_015896091.1|1.4e-0776.32PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Ziziphus jujuba][more]
gi|388493540|gb|AFK34836.1|1.4e-0773.68unknown [Lotus japonicus][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0019685 photosynthesis, dark reaction
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016630 protochlorophyllide reductase activity
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007830.1CmoCh04G007830.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24320FAMILY NOT NAMEDcoord: 17..53
score: 3.2
NoneNo IPR availablePANTHERPTHR24320:SF71SUBFAMILY NOT NAMEDcoord: 17..53
score: 3.2

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G007830CmoCh16G006440Cucurbita moschata (Rifu)cmocmoB285