CmoCh04G007830 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGTGAGAGAACAACCATAAAGTAGTGTACCCAAGGTTGGGGGTAGGTATGGATGGTCAGATTTGCCACTCGTGGTATAACTAGCTAGTAGACGCTCCCTGATGTGTCTCGAGGAGAACAAGATGGTAGTGGGAGACCAGATTGTAACGCCTGAAAGAGGGGTTATACGAAGCTAGAAGATTCTTATACAATACTCGATGGAGGTATTATACAGGAGAAGACTAAGAGGGGTACTATGAGATGGTACAATCGTGAGCACACAAGTTTTAATGTATTGAATGAGGGAATTCTGCTCGAGGACTCAGTGACAACCTGGCCCACATTATCAATCTAGCCTGGAATGACACCCCGTCTAGAATGGCAATGAGTAAGGAGATGGTTGCATGCCACTAGGAGTAGTCGATAACACTAAAAGTGTCCCACTAAGAGGAGAATTATGCCCGACAAGATGTAGGATGCCATGGATGGCAGCATTGCCTTGAAAATGAAAAGTTAAACTCAGTCCTGGTTAAACTCATTTGATAGGCACGACACAAGAAGTTGTTATCTATGCCCTTGTAATGAGAGAAGAGATTAAACCTAACCACAGGTTCATGGGTTTGGGTCAATCTTCGTGCTTGGCATGGGAATATAGAGGCAAAAGTGATGTGTACGACAATAAATATAGTACCATGGACAAACGGTTGAGCTTGGTACTAAAGATTGAGGGTAAGACATATAAATGAACGGCTTCACCACCTGATGTGGTGTGACATGTCGACATGTGAATATGGAATTGGATAGGCAACGAACTCCTGGTGATCAAATTGAGCTGTGCGGTCGTGGGAGGGACCCCTAGATTGAGTCTTTTCCTTTTATTTTGCTTTTAATATTATTTACCTTGAAACTTAAGCTATATTATAACTACTTTTGATGTTGACTCCACGAAATATGTCAGTTTAAAGGCATGTTTTATTTTTCTCCTTGCGTTTCTTTGTTTTACAAAATTGAAAAAAATTTCCATCCTTTTTACCTTTCATTGTGTCCACGTGATGATCTATGATTCGAAACATCAAAAAGCAGGTTACAGTTTCCATTGTCTCATCAATGGTAGCTTTCTCGTTCGGTAACATGTATAAGGAAAACCTTTATATTTCGCATCTACTTGGTGAAAAAAATTTGAAGGGTCATATGATCTACTTAGAGAAGGACTATCTTCAATCACTTGAAAAGCTTTGCTGTTTCATTCCTTCTACATCCTTTATGCAGGCATATTTAGTTTGAGGATGTGATTTCTGAACAAATATAAACATCTACCTACCCATCTTATTAATTATGCATTCACATGTTTCTTTACTTTTTCCATTTTCCTGCTTATATTATCACGCTCATGAGTTTACTATCTCTGTGTATATCGACTTATTCAGTAGGTATTTTAGTTCTTGATTTCACCCAATTTTGTTGAGGACTATTTACTTAGTCTCTTTCAGGTGGGTTTTTATGTGCATAAAGTTTGATCATGTAGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGTAGTTGGCCAAGAAACTGTGGGATTTCAGCGTGGAACCAACCAGTCCAAAATAATTTGAATCTAATAGAAGCCTTTTGTTACTCTTAGCTTCTCATCTCAGACTTTATGTTATTGATATATGGACTGTTAAATGGTGGAAGTAGATGTATCATTATTTTTAGTTTCAAGTGCCCCTTTGAGCCTATACAAACAATTACTGAGCACAAGTTTGTTATACTGTGTAACAAATACAATAGTGTTTTTGTAGATTTCAGTCCAAAAGTGTGACAAAAGTATTTTAAACACCTATTCTGGATAAATAATTCACAACCAGCTCATGTAAAAGCTTTAGAAGATAATTATGAATATAGTTACTTTTTTCTTTTTCATTTTCTTATAAATAAACTCCAGCAACATGTTGCCCTTGGGAACCAGAGCAGTGTGTTTGTGTACTGGTGCTGTAATTCTTATTCTGTTTGCAGGTCATCCATTTCATACAATGATGCATGTCGATTAGACAGTTCTGCAATTTTTGGGTAGCCCAACCCAATGGATTCTCAACCTTTTTTTCTTTTTTCTCGTGTTTTAATTCTAATTAATTCAAGATCGACAAAAGAAACGCTGTCAAAAGATAAAAAACAATTTTTATTACCATATTTTCACACTTCCAATTTCTACAGAATACTAATAGCTGTTACAATTCAAGTGAGGAGCCACTACTGTATGTTAATAGGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG ATGGCGAAGGTCGTGCTAGAGGACAAGGAGGACGATGAGTACAAGATGGGAGCGGCAACTCAGTGTTATGTGGCGTTGAACCCCCAAGTAAAAGGGGTAAGTGGAGAGTATTTTGTTGATAATAATATTGCCGGCCCAACCAATCATGCCAAGAATATGGCCCATTGTCGCCTACAGGTTTCTAATTATCATACTATTCAGACCTGCCTGTGTTTAGGAGGTCAGATTGTTGAAAAGAATATGGCTTCTGGTTTTACTCTTTTCATGATTTGTCCTCTTTTTTACCTTCAAAGCTCACCAGTCCTTTAG
BLAST of CmoCh04G007830 vs. Swiss-Prot
Match: TIC32_PEA (Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 1.8e-07 Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 1
BLAST of CmoCh04G007830 vs. Swiss-Prot
Match: TIC32_ARATH (Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 5.3e-07 Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TrEMBL
Match: A0A0A0KUV5_CUCSA (Short-chain dehydrogenase OS=Cucumis sativus GN=Csa_4G047990 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 2.5e-11 Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TrEMBL
Match: A0A0C9RTF0_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_13881_1092 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08 Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TrEMBL
Match: M1BAI8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG402015792 PE=3 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TrEMBL
Match: I3SM28_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 9.8e-08 Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TrEMBL
Match: I3S3J4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 64.3 bits (155), Expect = 9.8e-08 Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G23430.2 (AT4G23430.2 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 55.1 bits (131), Expect = 3.0e-08 Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G11410.1 (AT4G11410.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TAIR10
Match: AT4G23420.3 (AT4G23420.3 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 54.3 bits (129), Expect = 5.1e-08 Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TAIR10
Match: AT2G37540.1 (AT2G37540.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 48.5 bits (114), Expect = 2.8e-06 Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
BLAST of CmoCh04G007830 vs. TAIR10
Match: AT5G02540.1 (AT5G02540.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 47.4 bits (111), Expect = 6.2e-06 Identity = 21/36 (58.33%), Postives = 27/36 (75.00%), Query Frame = 1
BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|449457572|ref|XP_004146522.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Cucumis sativus]) HSP 1 Score: 76.3 bits (186), Expect = 3.6e-11 Identity = 38/53 (71.70%), Postives = 44/53 (83.02%), Query Frame = 1
BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|659102252|ref|XP_008452031.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cucumis melo]) HSP 1 Score: 73.9 bits (180), Expect = 1.8e-10 Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|565374678|ref|XP_006353883.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Solanum tuberosum]) HSP 1 Score: 64.7 bits (156), Expect = 1.1e-07 Identity = 28/39 (71.79%), Postives = 33/39 (84.62%), Query Frame = 1
BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|1009156147|ref|XP_015896091.1| (PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07 Identity = 29/38 (76.32%), Postives = 34/38 (89.47%), Query Frame = 1
BLAST of CmoCh04G007830 vs. NCBI nr
Match: gi|388493540|gb|AFK34836.1| (unknown [Lotus japonicus]) HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07 Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |