CmoCh04G007660 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G007660
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationCmo_Chr04 : 3841372 .. 3843709 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGTTAAGTATAATGGCAAGTGCAACAGACTCATCTGATAGGCAAGCAGATGTGCAGGTAATTTCTAAATTAATAAAAATACCCCTCAACTTTTCACTTTATAATACCCCTAAACTTTCAAAAAATTTAATAACCTTTGACTTTCAAAAAATAGTCTAAAAAATACTCTTAAATTTTAATAAAAATTCAAAAATACCCTTACTGTCCTTTACGGTTAGGTCCTTTACGGTTAGGTTTGTATGAAAGTGGTTAATACTTTGTTTAAAAAAAAAAAAAAAGACTCCTAAGCGGGTTTCAAAAATACCTTTTTAACTTTGAAAATTGTTTAAAAAATACAAATTTTTATTAATACCCTTAATTTTTTTTTTAAGAACTCCAAATTACCTTTGAACTCTTTTAAAACCTTCAAAAACATCTTTTTAAACTTTTTTAAAAACTTCAAAAGCACCTTTAAATATTTTTTAAAAATTAAAAAATGTCCTTACCGTTAGTACCACGTTTCAAAAATACTCATGAACTTTCAATAGTAATATTAAAAAGTTTGAAGATAATTTATGAGGTGTCTATAGATGGTTTCGTTCATATATTGACGGTAAGAAATTTTTTGTACTTTTTTTGTTTTATAAAGGTGGTGTCGATGCTATTGGGCATTTTTAAACAAAATATTAACGGCAAAGGTATTTTTTAACTTTTTAAAAAGAACTTTTTAAAGTTTATATTTTTGAACCATTCTTGAAAGTTCAAGGGCAAAATACTTCAAAATTAATGGTAAGAATATTTTTAGATTTTTTTTTTTAAGTTTTAGGTTTTTATTGAAACTTTTGAAAGTTTAAGGGTATGTTTTAAACAAAGTACAAATTTTAAGAGTATTTTTATTAATTTAGCCTTGCAGATAAAATCTGAATTCCTAAATTCAATTTCTATTTACCTCAGGATTAATAGAATTTATAGTGATTGAGTTTGGTATGATGCTTAATTATTACGTTTTTATAGAGAAATTTGGTCAATGATCCATTGATAAATGCACTAATTCTTCATGCAAATTCTTAGAGAATGTGGAATATGGTTTCTAACGTTGGTGTAGTTACATCTCTTTTTGTTGGCTGCTGTCCTGTTTAATCGCATTTTCTTTGCCAAAACTTAGTAGGATGGTTTTGGTTAATCCCTCTAATATAAGTAATAGGTCCATTCGGCCTTTTAATTTTTCCCGTTTTCAGCCTTGTGCATTTGAAACACCGAGCACCGTATACAATGACTGAATTTCCTTTTCCAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAAGCGTACTTTTGTGCAAACCAGTTGGCAAGGCCCTCAAGGAAACATCCTTGAACATTCAGACTAGGAAGTCTCTTAAAAGTTAAAAACCATCATGAATTTCCTAGTTTCCATCCTCTTGCTTGCTTACCACTAGTTCAAGGCTTTCGGGCTGTGGTTCTGTATTTCCTGATTAAGTCGGCCCACGCGCAACATGAAGAATTTAAAAGGCGTCTGTCTTCTTGTGGCCTTCCCAGGATATATCTTCAATTGTTGCTTCTTTGAGGGAGAAATGAAAGAAAAGAATCTGATATGCATTTTTCTGGTATGATCATGTTATCAATTCATCACTCTTAAAGATTTTCGATTTTTTCTCCTCATGTATTCCCAGTCTTCTCAAGATCGACTTTCTTCGAGTCTCCACGGGTAGTAATTGCTATTTTTGCATAGCTTTGGTTACAATATTGTATTTAATTTATATGTTTTAGCAGCTTGTTTATAAAAGTTGCATGTAATGTTGTCTTGTTTTTGTCTGTGAAACCCAAACCTTATTATTTTAGAGAGGAAGTTACCATAGAGCTGTGTTGGGTAATCCATTCAATATGGAACTGATGTTGCTGCTTTATTTTTCCTTTCTACTTTTTCTCCATTGGCTTACTTTTGGATTTGTATTATCAACGAATATGTTGAATGTTCATGTAGATTAAACAAAATGGAGCTAAACTCTAAGCACTGAAATATCTGAGTCAATTTATTGGAAAAAGAAAAACTGCAATTAAGGTAATTGTATATCTCATTTACCTATCTTATCATATAATTATCAATGAAAA

mRNA sequence

ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAAGCGTACTTTTGTGCAAACCAGTTGGCAAGGCCCTCAAGGAAACATCCTTGAACATTCAGACTAGGAAGTCTCTTAAAAGTTAAAAACCATCATGAATTTCCTAGTTTCCATCCTCTTGCTTGCTTACCACTAGTTCAAGGCTTTCGGGCTGTGGTTCTGTATTTCCTGATTAAGTCGGCCCACGCGCAACATGAAGAATTTAAAAGGCGTCTGTCTTCTTGTGGCCTTCCCAGGATATATCTTCAATTGTTGCTTCTTTGAGGGAGAAATGAAAGAAAAGAATCTGATATGCATTTTTCTGGTATGATCATGTTATCAATTCATCACTCTTAAAGATTTTCGATTTTTTCTCCTCATGTATTCCCAGTCTTCTCAAGATCGACTTTCTTCGAGTCTCCACGGGTAGTAATTGCTATTTTTGCATAGCTTTGGTTACAATATTGTATTTAATTTATATGTTTTAGCAGCTTGTTTATAAAAGTTGCATGTAATGTTGTCTTGTTTTTGTCTGTGAAACCCAAACCTTATTATTTTAGAGAGGAAGTTACCATAGAGCTGTGTTGGGTAATCCATTCAATATGGAACTGATGTTGCTGCTTTATTTTTCCTTTCTACTTTTTCTCCATTGGCTTACTTTTGGATTTGTATTATCAACGAATATGTTGAATGTTCATGTAGATTAAACAAAATGGAGCTAAACTCTAAGCACTGAAATATCTGAGTCAATTTATTGGAAAAAGAAAAACTGCAATTAAGGTAATTGTATATCTCATTTACCTATCTTATCATATAATTATCAATGAAAA

Coding sequence (CDS)

ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAA
Homology
[Close]
BLAST of CmoCh04G007660 vs. TrEMBL
Match: A0A0A0KY82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050140 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1494 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1541

[Close]
BLAST of CmoCh04G007660 vs. TrEMBL
Match: A0A072U5K6_MEDTR (Transducin/WD-like repeat-protein OS=Medicago truncatula GN=MTR_8g098950 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-10
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            ++  +D +H D LK L+H+LDLSYRLEW  ERK+ LTRHGNELG+FQ+
Sbjct: 1395 QNNAKDSNHVDSLKQLLHNLDLSYRLEWVAERKVLLTRHGNELGTFQL 1442

[Close]
BLAST of CmoCh04G007660 vs. TrEMBL
Match: M5WZ68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000184mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            ++  + LS AD LK+LIH+LDLSYRLEW GERK+ LTRHG+ELG+F +
Sbjct: 1459 QEGTKGLSQADNLKLLIHNLDLSYRLEWVGERKVLLTRHGHELGTFPL 1506

[Close]
BLAST of CmoCh04G007660 vs. TrEMBL
Match: W9SJ52_9ROSA (WD repeat-containing protein 7 OS=Morus notabilis GN=L484_006701 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 38   FEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            F+D ++  SH D LK+LIH++DLSYRLEW G+RK+ LTRHG+ELG++ +
Sbjct: 1441 FQDNLKVSSHPDSLKLLIHNIDLSYRLEWVGDRKVLLTRHGHELGTYPL 1489

[Close]
BLAST of CmoCh04G007660 vs. TrEMBL
Match: A0A151SV26_CAJCA (WD repeat-containing protein 7 OS=Cajanus cajan GN=KK1_014066 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 38   FEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            F+D  +D +H D LK L+H+LDLSYRLEW   RK+ LTRHG+ELG+FQ+
Sbjct: 1388 FQDNAKDSNHGDCLKQLLHNLDLSYRLEWAEGRKVLLTRHGHELGTFQL 1436

[Close]
BLAST of CmoCh04G007660 vs. TAIR10
Match: AT4G11270.1 (AT4G11270.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGS 84
            ++  +++SH + LK L+  LDLSYRLEW  ERK+ LTRH  ELG+
Sbjct: 1399 QETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGT 1443

[Close]
BLAST of CmoCh04G007660 vs. NCBI nr
Match: gi|659102195|ref|XP_008452001.1| (PREDICTED: uncharacterized protein LOC103493139 isoform X1 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILIHSLDLSYRLEW  ERK++LTRHGNELG+FQI
Sbjct: 1451 QDNVRALSHADILKILIHSLDLSYRLEWIDERKVKLTRHGNELGTFQI 1498

[Close]
BLAST of CmoCh04G007660 vs. NCBI nr
Match: gi|659102197|ref|XP_008452002.1| (PREDICTED: uncharacterized protein LOC103493139 isoform X2 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILIHSLDLSYRLEW  ERK++LTRHGNELG+FQI
Sbjct: 1390 QDNVRALSHADILKILIHSLDLSYRLEWIDERKVKLTRHGNELGTFQI 1437

[Close]
BLAST of CmoCh04G007660 vs. NCBI nr
Match: gi|778690919|ref|XP_011653193.1| (PREDICTED: uncharacterized protein LOC101221785 isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1451 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1498

[Close]
BLAST of CmoCh04G007660 vs. NCBI nr
Match: gi|700198199|gb|KGN53357.1| (hypothetical protein Csa_4G050140 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1494 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1541

[Close]
BLAST of CmoCh04G007660 vs. NCBI nr
Match: gi|764580940|ref|XP_011463926.1| (PREDICTED: uncharacterized protein LOC101292709 [Fragaria vesca subsp. vesca])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 20   SMHQSDICFSMGGILAQFFEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGN 79
            SM  S +   MG       ++  + LS AD LK+LIH+L+LSY+LEW GERK++LTRHG+
Sbjct: 1420 SMRSSIMASIMGHDGQANIQENAKGLSQADNLKLLIHNLELSYQLEWVGERKVRLTRHGH 1479

Query: 80   ELGSFQI 87
            ELG+FQ+
Sbjct: 1480 ELGTFQL 1486

The following BLAST results are available for this feature:
BLAST of CmoCh04G007660 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007660 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY82_CUCSA4.5e-1483.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050140 PE=4 SV=1[more]
A0A072U5K6_MEDTR8.8e-1062.50Transducin/WD-like repeat-protein OS=Medicago truncatula GN=MTR_8g098950 PE=4 SV... [more]
M5WZ68_PRUPE1.1e-0964.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000184mg PE=4 SV=1[more]
W9SJ52_9ROSA1.5e-0959.18WD repeat-containing protein 7 OS=Morus notabilis GN=L484_006701 PE=4 SV=1[more]
A0A151SV26_CAJCA2.0e-0961.22WD repeat-containing protein 7 OS=Cajanus cajan GN=KK1_014066 PE=4 SV=1[more]
BLAST of CmoCh04G007660 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11270.11.9e-0853.33 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of CmoCh04G007660 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102195|ref|XP_008452001.1|4.9e-1483.33PREDICTED: uncharacterized protein LOC103493139 isoform X1 [Cucumis melo][more]
gi|659102197|ref|XP_008452002.1|4.9e-1483.33PREDICTED: uncharacterized protein LOC103493139 isoform X2 [Cucumis melo][more]
gi|778690919|ref|XP_011653193.1|6.5e-1483.33PREDICTED: uncharacterized protein LOC101221785 isoform X1 [Cucumis sativus][more]
gi|700198199|gb|KGN53357.1|6.5e-1483.33hypothetical protein Csa_4G050140 [Cucumis sativus][more]
gi|764580940|ref|XP_011463926.1|2.5e-1052.24PREDICTED: uncharacterized protein LOC101292709 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G007660.1CmoCh04G007660.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G007660Cla014666Watermelon (97103) v1cmowmB671
CmoCh04G007660ClCG07G007840Watermelon (Charleston Gray)cmowcgB670
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G007660Watermelon (97103) v2cmowmbB677
CmoCh04G007660Watermelon (97103) v2cmowmbB733
CmoCh04G007660Watermelon (97103) v2cmowmbB744
CmoCh04G007660Watermelon (97103) v2cmowmbB748
CmoCh04G007660Wax gourdcmowgoB0843
CmoCh04G007660Cucurbita moschata (Rifu)cmocmoB264
CmoCh04G007660Cucurbita moschata (Rifu)cmocmoB285
CmoCh04G007660Cucumber (Gy14) v1cgycmoB0245
CmoCh04G007660Cucumber (Gy14) v1cgycmoB0833
CmoCh04G007660Cucurbita maxima (Rimu)cmacmoB311
CmoCh04G007660Cucurbita maxima (Rimu)cmacmoB337
CmoCh04G007660Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G007660Wild cucumber (PI 183967)cmocpiB715
CmoCh04G007660Wild cucumber (PI 183967)cmocpiB734
CmoCh04G007660Cucumber (Chinese Long) v2cmocuB705
CmoCh04G007660Cucumber (Chinese Long) v2cmocuB728
CmoCh04G007660Melon (DHL92) v3.5.1cmomeB628
CmoCh04G007660Melon (DHL92) v3.5.1cmomeB686
CmoCh04G007660Watermelon (Charleston Gray)cmowcgB637
CmoCh04G007660Cucurbita pepo (Zucchini)cmocpeB661
CmoCh04G007660Cucurbita pepo (Zucchini)cmocpeB667
CmoCh04G007660Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G007660Bottle gourd (USVL1VR-Ls)cmolsiB611
CmoCh04G007660Bottle gourd (USVL1VR-Ls)cmolsiB694
CmoCh04G007660Melon (DHL92) v3.6.1cmomedB779
CmoCh04G007660Cucumber (Gy14) v2cgybcmoB521
CmoCh04G007660Cucumber (Gy14) v2cgybcmoB639
CmoCh04G007660Melon (DHL92) v3.6.1cmomedB717
CmoCh04G007660Melon (DHL92) v3.6.1cmomedB773
CmoCh04G007660Silver-seed gourdcarcmoB0804
CmoCh04G007660Silver-seed gourdcarcmoB1259
CmoCh04G007660Cucumber (Chinese Long) v3cmocucB0870
CmoCh04G007660Cucumber (Chinese Long) v3cmocucB0821
CmoCh04G007660Cucumber (Chinese Long) v3cmocucB0833
CmoCh04G007660Cucumber (Chinese Long) v3cmocucB0860