CmoCh04G007660.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G007660.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationCmo_Chr04 : 3841372 .. 3843709 (+)
Sequence length1067
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGTTAAGTATAATGGCAAGTGCAACAGACTCATCTGATAGGCAAGCAGATGTGCAGGTAATTTCTAAATTAATAAAAATACCCCTCAACTTTTCACTTTATAATACCCCTAAACTTTCAAAAAATTTAATAACCTTTGACTTTCAAAAAATAGTCTAAAAAATACTCTTAAATTTTAATAAAAATTCAAAAATACCCTTACTGTCCTTTACGGTTAGGTCCTTTACGGTTAGGTTTGTATGAAAGTGGTTAATACTTTGTTTAAAAAAAAAAAAAAAGACTCCTAAGCGGGTTTCAAAAATACCTTTTTAACTTTGAAAATTGTTTAAAAAATACAAATTTTTATTAATACCCTTAATTTTTTTTTTAAGAACTCCAAATTACCTTTGAACTCTTTTAAAACCTTCAAAAACATCTTTTTAAACTTTTTTAAAAACTTCAAAAGCACCTTTAAATATTTTTTAAAAATTAAAAAATGTCCTTACCGTTAGTACCACGTTTCAAAAATACTCATGAACTTTCAATAGTAATATTAAAAAGTTTGAAGATAATTTATGAGGTGTCTATAGATGGTTTCGTTCATATATTGACGGTAAGAAATTTTTTGTACTTTTTTTGTTTTATAAAGGTGGTGTCGATGCTATTGGGCATTTTTAAACAAAATATTAACGGCAAAGGTATTTTTTAACTTTTTAAAAAGAACTTTTTAAAGTTTATATTTTTGAACCATTCTTGAAAGTTCAAGGGCAAAATACTTCAAAATTAATGGTAAGAATATTTTTAGATTTTTTTTTTTAAGTTTTAGGTTTTTATTGAAACTTTTGAAAGTTTAAGGGTATGTTTTAAACAAAGTACAAATTTTAAGAGTATTTTTATTAATTTAGCCTTGCAGATAAAATCTGAATTCCTAAATTCAATTTCTATTTACCTCAGGATTAATAGAATTTATAGTGATTGAGTTTGGTATGATGCTTAATTATTACGTTTTTATAGAGAAATTTGGTCAATGATCCATTGATAAATGCACTAATTCTTCATGCAAATTCTTAGAGAATGTGGAATATGGTTTCTAACGTTGGTGTAGTTACATCTCTTTTTGTTGGCTGCTGTCCTGTTTAATCGCATTTTCTTTGCCAAAACTTAGTAGGATGGTTTTGGTTAATCCCTCTAATATAAGTAATAGGTCCATTCGGCCTTTTAATTTTTCCCGTTTTCAGCCTTGTGCATTTGAAACACCGAGCACCGTATACAATGACTGAATTTCCTTTTCCAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAAGCGTACTTTTGTGCAAACCAGTTGGCAAGGCCCTCAAGGAAACATCCTTGAACATTCAGACTAGGAAGTCTCTTAAAAGTTAAAAACCATCATGAATTTCCTAGTTTCCATCCTCTTGCTTGCTTACCACTAGTTCAAGGCTTTCGGGCTGTGGTTCTGTATTTCCTGATTAAGTCGGCCCACGCGCAACATGAAGAATTTAAAAGGCGTCTGTCTTCTTGTGGCCTTCCCAGGATATATCTTCAATTGTTGCTTCTTTGAGGGAGAAATGAAAGAAAAGAATCTGATATGCATTTTTCTGGTATGATCATGTTATCAATTCATCACTCTTAAAGATTTTCGATTTTTTCTCCTCATGTATTCCCAGTCTTCTCAAGATCGACTTTCTTCGAGTCTCCACGGGTAGTAATTGCTATTTTTGCATAGCTTTGGTTACAATATTGTATTTAATTTATATGTTTTAGCAGCTTGTTTATAAAAGTTGCATGTAATGTTGTCTTGTTTTTGTCTGTGAAACCCAAACCTTATTATTTTAGAGAGGAAGTTACCATAGAGCTGTGTTGGGTAATCCATTCAATATGGAACTGATGTTGCTGCTTTATTTTTCCTTTCTACTTTTTCTCCATTGGCTTACTTTTGGATTTGTATTATCAACGAATATGTTGAATGTTCATGTAGATTAAACAAAATGGAGCTAAACTCTAAGCACTGAAATATCTGAGTCAATTTATTGGAAAAAGAAAAACTGCAATTAAGGTAATTGTATATCTCATTTACCTATCTTATCATATAATTATCAATGAAAA

mRNA sequence

ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAAGCGTACTTTTGTGCAAACCAGTTGGCAAGGCCCTCAAGGAAACATCCTTGAACATTCAGACTAGGAAGTCTCTTAAAAGTTAAAAACCATCATGAATTTCCTAGTTTCCATCCTCTTGCTTGCTTACCACTAGTTCAAGGCTTTCGGGCTGTGGTTCTGTATTTCCTGATTAAGTCGGCCCACGCGCAACATGAAGAATTTAAAAGGCGTCTGTCTTCTTGTGGCCTTCCCAGGATATATCTTCAATTGTTGCTTCTTTGAGGGAGAAATGAAAGAAAAGAATCTGATATGCATTTTTCTGGTATGATCATGTTATCAATTCATCACTCTTAAAGATTTTCGATTTTTTCTCCTCATGTATTCCCAGTCTTCTCAAGATCGACTTTCTTCGAGTCTCCACGGGTAGTAATTGCTATTTTTGCATAGCTTTGGTTACAATATTGTATTTAATTTATATGTTTTAGCAGCTTGTTTATAAAAGTTGCATGTAATGTTGTCTTGTTTTTGTCTGTGAAACCCAAACCTTATTATTTTAGAGAGGAAGTTACCATAGAGCTGTGTTGGGTAATCCATTCAATATGGAACTGATGTTGCTGCTTTATTTTTCCTTTCTACTTTTTCTCCATTGGCTTACTTTTGGATTTGTATTATCAACGAATATGTTGAATGTTCATGTAGATTAAACAAAATGGAGCTAAACTCTAAGCACTGAAATATCTGAGTCAATTTATTGGAAAAAGAAAAACTGCAATTAAGGTAATTGTATATCTCATTTACCTATCTTATCATATAATTATCAATGAAAA

Coding sequence (CDS)

ATGGTGGTCATTGGGATCTGTATGGTGGGAGAAACTAAGCCGCAACTTTGTTCCTGTTCAATGCACCAAAGTGATATTTGTTTCTCCATGGGAGGGATTCTCGCCCAATTCTTCGAGGACTACGTAAGGGATTTGAGTCATGCAGACATTTTGAAGATTTTGATTCATAGTCTCGATCTTTCTTATCGGCTAGAATGGACTGGCGAACGGAAACTTCAACTCACACGGCATGGAAATGAGTTGGGATCTTTTCAAATATAA
Homology
[Close]
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match: A0A0A0KY82_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050140 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1494 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1541

[Close]
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match: A0A072U5K6_MEDTR (Transducin/WD-like repeat-protein OS=Medicago truncatula GN=MTR_8g098950 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 8.8e-10
Identity = 30/48 (62.50%), Postives = 39/48 (81.25%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            ++  +D +H D LK L+H+LDLSYRLEW  ERK+ LTRHGNELG+FQ+
Sbjct: 1395 QNNAKDSNHVDSLKQLLHNLDLSYRLEWVAERKVLLTRHGNELGTFQL 1442

[Close]
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match: M5WZ68_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000184mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-09
Identity = 31/48 (64.58%), Postives = 40/48 (83.33%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            ++  + LS AD LK+LIH+LDLSYRLEW GERK+ LTRHG+ELG+F +
Sbjct: 1459 QEGTKGLSQADNLKLLIHNLDLSYRLEWVGERKVLLTRHGHELGTFPL 1506

[Close]
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match: W9SJ52_9ROSA (WD repeat-containing protein 7 OS=Morus notabilis GN=L484_006701 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.5e-09
Identity = 29/49 (59.18%), Postives = 41/49 (83.67%), Query Frame = 1 

Query: 38   FEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            F+D ++  SH D LK+LIH++DLSYRLEW G+RK+ LTRHG+ELG++ +
Sbjct: 1441 FQDNLKVSSHPDSLKLLIHNIDLSYRLEWVGDRKVLLTRHGHELGTYPL 1489

[Close]
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match: A0A151SV26_CAJCA (WD repeat-containing protein 7 OS=Cajanus cajan GN=KK1_014066 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-09
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 1 

Query: 38   FEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            F+D  +D +H D LK L+H+LDLSYRLEW   RK+ LTRHG+ELG+FQ+
Sbjct: 1388 FQDNAKDSNHGDCLKQLLHNLDLSYRLEWAEGRKVLLTRHGHELGTFQL 1436

[Close]
BLAST of CmoCh04G007660.1 vs. TAIR10
Match: AT4G11270.1 (AT4G11270.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-08
Identity = 24/45 (53.33%), Postives = 33/45 (73.33%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGS 84
            ++  +++SH + LK L+  LDLSYRLEW  ERK+ LTRH  ELG+
Sbjct: 1399 QETAKNISHVERLKQLVQHLDLSYRLEWASERKVVLTRHNVELGT 1443

[Close]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match: gi|659102195|ref|XP_008452001.1| (PREDICTED: uncharacterized protein LOC103493139 isoform X1 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILIHSLDLSYRLEW  ERK++LTRHGNELG+FQI
Sbjct: 1451 QDNVRALSHADILKILIHSLDLSYRLEWIDERKVKLTRHGNELGTFQI 1498

[Close]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match: gi|659102197|ref|XP_008452002.1| (PREDICTED: uncharacterized protein LOC103493139 isoform X2 [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 4.9e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILIHSLDLSYRLEW  ERK++LTRHGNELG+FQI
Sbjct: 1390 QDNVRALSHADILKILIHSLDLSYRLEWIDERKVKLTRHGNELGTFQI 1437

[Close]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match: gi|778690919|ref|XP_011653193.1| (PREDICTED: uncharacterized protein LOC101221785 isoform X1 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1451 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1498

[Close]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match: gi|700198199|gb|KGN53357.1| (hypothetical protein Csa_4G050140 [Cucumis sativus])

HSP 1 Score: 85.1 bits (209), Expect = 6.5e-14
Identity = 40/48 (83.33%), Postives = 44/48 (91.67%), Query Frame = 1 

Query: 39   EDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGNELGSFQI 87
            +D VR LSHADILKILI SLDLSYRLEWT ERK++LTRHGNELG+FQI
Sbjct: 1494 QDNVRGLSHADILKILIQSLDLSYRLEWTDERKVKLTRHGNELGTFQI 1541

[Close]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match: gi|764580940|ref|XP_011463926.1| (PREDICTED: uncharacterized protein LOC101292709 [Fragaria vesca subsp. vesca])

HSP 1 Score: 73.2 bits (178), Expect = 2.5e-10
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 1 

Query: 20   SMHQSDICFSMGGILAQFFEDYVRDLSHADILKILIHSLDLSYRLEWTGERKLQLTRHGN 79
            SM  S +   MG       ++  + LS AD LK+LIH+L+LSY+LEW GERK++LTRHG+
Sbjct: 1420 SMRSSIMASIMGHDGQANIQENAKGLSQADNLKLLIHNLELSYQLEWVGERKVRLTRHGH 1479

Query: 80   ELGSFQI 87
            ELG+FQ+
Sbjct: 1480 ELGTFQL 1486

The following BLAST results are available for this feature:
BLAST of CmoCh04G007660.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G007660.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KY82_CUCSA4.5e-1483.33Uncharacterized protein OS=Cucumis sativus GN=Csa_4G050140 PE=4 SV=1[more]
A0A072U5K6_MEDTR8.8e-1062.50Transducin/WD-like repeat-protein OS=Medicago truncatula GN=MTR_8g098950 PE=4 SV... [more]
M5WZ68_PRUPE1.1e-0964.58Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000184mg PE=4 SV=1[more]
W9SJ52_9ROSA1.5e-0959.18WD repeat-containing protein 7 OS=Morus notabilis GN=L484_006701 PE=4 SV=1[more]
A0A151SV26_CAJCA2.0e-0961.22WD repeat-containing protein 7 OS=Cajanus cajan GN=KK1_014066 PE=4 SV=1[more]
BLAST of CmoCh04G007660.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G11270.11.9e-0853.33 Transducin/WD40 repeat-like superfamily protein[more]
BLAST of CmoCh04G007660.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102195|ref|XP_008452001.1|4.9e-1483.33PREDICTED: uncharacterized protein LOC103493139 isoform X1 [Cucumis melo][more]
gi|659102197|ref|XP_008452002.1|4.9e-1483.33PREDICTED: uncharacterized protein LOC103493139 isoform X2 [Cucumis melo][more]
gi|778690919|ref|XP_011653193.1|6.5e-1483.33PREDICTED: uncharacterized protein LOC101221785 isoform X1 [Cucumis sativus][more]
gi|700198199|gb|KGN53357.1|6.5e-1483.33hypothetical protein Csa_4G050140 [Cucumis sativus][more]
gi|764580940|ref|XP_011463926.1|2.5e-1052.24PREDICTED: uncharacterized protein LOC101292709 [Fragaria vesca subsp. vesca][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0005829 cytosol
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G007660CmoCh04G007660gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G007660.1CmoCh04G007660.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007660.1.exon.1CmoCh04G007660.1.exon.1exon
CmoCh04G007660.1.exon.2CmoCh04G007660.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007660.1.CDS.1CmoCh04G007660.1.CDS.1CDS
CmoCh04G007660.1.CDS.2CmoCh04G007660.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G007660.1.three_prime_UTR.1CmoCh04G007660.1.three_prime_UTR.1three_prime_UTR