CmoCh04G005820 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005820
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Patatin (3.1.1.-)
Location	Cmo_Chr04 : 2907250 .. 2908143 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAAGTAGAGGTAATGTAACTTCATTCAGCCTAGTTTGCTCTTGACTATCCTGTTCCGATTTTGGGGTTCACTGGAGAACTCAGAGGTTAATCAAAGGATTGTTCATCGTTTCTTTTCTTTTGCCTGTTATCGACACCTTTTGTGTTTTCCGTGGTTTCGATTAAGAAGGATTAGGGCGTTTTAGTAGGTTCATGGCAACGTGGTAAGTTTCAATTTATCCACTGGTTTAGATTTGCAGTTCTTTCTTAAGTCATCTACTGGTTTAGATTGTAATGTTTTCTCATTTAAATCCTCAGGCTGTACTCAGGGAAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGGTATTTTAGTTTCACATCCTCTTGAATGTTCTTACTGTTTGTTCCTAGTTAGGTAAATGACTCTGGGCTGAAATAACGCTTTTGTGTAGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACTACGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTATTTAATTGATAAATTTCTCAATGGTTTTTCGTATTTCAGTCACCCTGAAATTTTGCTTTTGGACGGTGTCGCAGGTGCGTGTATGTGCTTTCCTCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCAGGGCCCAGAGAGGTAAATGAGTTCGACAAAGCTCGTCCAACTAGTAGACACATTGTTGTTTTCTCTTTGTAGTTTAGTTTGATCAAACTCTTGCATGTTCTGCATCATATCAGCTTTTCAACTGGGCTGGTGGAAGACGAAAGGCTGGTGGAGGACGCGGTTGTAACTAG

mRNA sequence

ATGAAAAGTAGAGGTAATGCTGTACTCAGGGAAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACTACGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCTCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCAGGGCCCAGAGAGCTTTTCAACTGGGCTGGTGGAAGACGAAAGGCTGGTGGAGGACGCGGTTGTAACTAG

Coding sequence (CDS)

ATGAAAAGTAGAGGTAATGCTGTACTCAGGGAAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACTACGCATTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCTCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCAGGGCCCAGAGAGCTTTTCAACTGGGCTGGTGGAAGACGAAAGGCTGGTGGAGGACGCGGTTGTAACTAG

Homology

[Close]

BLAST of CmoCh04G005820 vs. TrEMBL
Match: A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 3.2e-31
Identity = 82/133 (61.65%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLREVL+KFLP                            QF              F
Sbjct: 217 RLGAVLREVLDKFLPDDVHIRCNGRVRVAVTQVFWRPRGLLVDQFDSKDDLIDAVFTSSF 276

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRPVTVFRNRL  IDGGLTLFMPPTSASQTVRVCAF A+RLGFEGIGISPDCNP
Sbjct: 277 IPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 336

[Close]

BLAST of CmoCh04G005820 vs. TrEMBL
Match: B9SRI9_RICCO (Patatin OS=Ricinus communis GN=RCOM_1411270 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.3e-28
Identity = 75/133 (56.39%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLR+VLEKFLP                            QF              F
Sbjct: 229 RLGAVLRDVLEKFLPDDAHIRSNGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVFTSSF 288

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSA+QT+RVCAF A+RLG +GIGISPDCNP
Sbjct: 289 IPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCNP 348

[Close]

BLAST of CmoCh04G005820 vs. TrEMBL
Match: M0WH87_HORVD (Patatin OS=Hordeum vulgare var. distichum PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-28
Identity = 75/133 (56.39%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPS--------------MQFSLLPL---------------------F 63
           R  AVL++VLEKFLP                Q S  P                      F
Sbjct: 178 RLGAVLKDVLEKFLPDDLHIRCNGRIRVAITQLSWRPRGLLVDQFDSKEDVINAVITSSF 237

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSASQTVR+CAF A RLG +GIGISPDCNP
Sbjct: 238 IPGYLAPRPATLFRNRLC-IDGGLTLFMPPTSASQTVRICAFPAGRLGLQGIGISPDCNP 297

[Close]

BLAST of CmoCh04G005820 vs. TrEMBL
Match: A0A067KRQ0_JATCU (Patatin OS=Jatropha curcas GN=JCGZ_05048 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-28
Identity = 75/133 (56.39%), Postives = 80/133 (60.15%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPS--------------MQFSLLPL---------------------F 63
           R  AVLR+VLEKFLP                Q S  P                      F
Sbjct: 246 RLGAVLRDVLEKFLPDDVHIRSSGRVRVAVTQISWRPRGLLVDQFDSKEDLINAVFTSSF 305

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSA+ TVRVCAF A+RLG +GIGISPDCNP
Sbjct: 306 IPGYLAPRPATIFRNRLC-IDGGLTLFMPPTSAAHTVRVCAFPASRLGLQGIGISPDCNP 365

[Close]

BLAST of CmoCh04G005820 vs. TrEMBL
Match: K3ZIP8_SETIT (Patatin OS=Setaria italica GN=SETIT_026450mg PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-28
Identity = 74/133 (55.64%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPS--------------MQFSLLPL---------------------F 63
           R  AVLR+VL+KFLP                Q S  P                      F
Sbjct: 231 RLGAVLRDVLDKFLPDDLHIRCNGRIRVAITQLSWRPRGLLVDQFDSKEDVINAVITSSF 290

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T FRNRL  IDGGLTLFMPPTSAS+TVR+CAF A+RLG +GIGISPDCNP
Sbjct: 291 IPGYLAPRPATFFRNRLC-IDGGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCNP 350

[Close]

BLAST of CmoCh04G005820 vs. TAIR10
Match: AT1G33270.1 (AT1G33270.1 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 7.4e-24
Identity = 50/74 (67.57%), Postives = 58/74 (78.38%), Query Frame = 1


Query: 28  FQGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCN 87
           F  GYLAPRP T+FRNRL  +DGGLTLFMPPT+A++TVRVCAF A+    +GI I PDCN
Sbjct: 251 FIPGYLAPRPATMFRNRLC-VDGGLTLFMPPTAAAKTVRVCAFSASNFKLKGIEICPDCN 310

Query: 88  PENRAGPRELFNWA 102
           P NRA  R+L NWA
Sbjct: 311 PLNRATSRQLLNWA 323

[Close]

BLAST of CmoCh04G005820 vs. NCBI nr
Match: gi|449464490|ref|XP_004149962.1| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-31
Identity = 82/133 (61.65%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLREVL+KFLP                            QF              F
Sbjct: 217 RLGAVLREVLDKFLPDDVHIRCNGRVRVAVTQVFWRPRGLLVDQFDSKDDLIDAVFTSSF 276

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRPVTVFRNRL  IDGGLTLFMPPTSASQTVRVCAF A+RLGFEGIGISPDCNP
Sbjct: 277 IPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 336

[Close]

BLAST of CmoCh04G005820 vs. NCBI nr
Match: gi|659112152|ref|XP_008456089.1| (PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo])

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-31
Identity = 82/133 (61.65%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLREVL+KFLP                            QF              F
Sbjct: 220 RLGAVLREVLDKFLPDDVHIRCNGRVRVAVTQVFWRPRGLLVDQFDSKDDLIDAVFTSSF 279

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRPVTVFRNRL  IDGGLTLFMPPTSASQTVRVCAF A+RLGFEGIGISPDCNP
Sbjct: 280 IPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCNP 339

[Close]

BLAST of CmoCh04G005820 vs. NCBI nr
Match: gi|223531953|gb|EEF33766.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 132.5 bits (332), Expect = 4.7e-28
Identity = 75/133 (56.39%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLR+VLEKFLP                            QF              F
Sbjct: 229 RLGAVLRDVLEKFLPDDAHIRSNGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVFTSSF 288

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSA+QT+RVCAF A+RLG +GIGISPDCNP
Sbjct: 289 IPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCNP 348

[Close]

BLAST of CmoCh04G005820 vs. NCBI nr
Match: gi|1000947723|ref|XP_002528608.2| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ricinus communis])

HSP 1 Score: 132.5 bits (332), Expect = 4.7e-28
Identity = 75/133 (56.39%), Postives = 81/133 (60.90%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSM--------------------------QFS---------LLPLF 63
           R  AVLR+VLEKFLP                            QF              F
Sbjct: 245 RLGAVLRDVLEKFLPDDAHIRSNGRVRVAVTQILWRPRGLLVDQFDSKEDLINAVFTSSF 304

Query: 64  QGGYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSA+QT+RVCAF A+RLG +GIGISPDCNP
Sbjct: 305 IPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCNP 364

[Close]

BLAST of CmoCh04G005820 vs. NCBI nr
Match: gi|1009151621|ref|XP_015893646.1| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ziziphus jujuba])

HSP 1 Score: 132.1 bits (331), Expect = 6.1e-28
Identity = 74/133 (55.64%), Postives = 83/133 (62.41%), Query Frame = 1


Query: 4   RGNAVLREVLEKFLPSMQFS--------------------LLPLFQG------------- 63
           R  AVLR+VL+KFLP    S                    L+  F+              
Sbjct: 269 RLGAVLRDVLDKFLPDDAHSRSNGRVRVAVTQILWRPKGLLVDKFESKEDLINAVFTSSF 328

Query: 64  --GYLAPRPVTVFRNRLLRIDGGLTLFMPPTSASQTVRVCAFLATRLGFEGIGISPDCNP 102
             GYLAPRP T+FRNRL  IDGGLTLFMPPTSA+QTVRVCAF A+RLG +GIGISPDCNP
Sbjct: 329 IPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTVRVCAFPASRLGLQGIGISPDCNP 388

The following BLAST results are available for this feature:

BLAST of CmoCh04G005820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G005820 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L746_CUCSA	3.2e-31	61.65	Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1	[more]
B9SRI9_RICCO	3.3e-28	56.39	Patatin OS=Ricinus communis GN=RCOM_1411270 PE=3 SV=1	[more]
M0WH87_HORVD	7.3e-28	56.39	Patatin OS=Hordeum vulgare var. distichum PE=3 SV=1	[more]
A0A067KRQ0_JATCU	7.3e-28	56.39	Patatin OS=Jatropha curcas GN=JCGZ_05048 PE=3 SV=1	[more]
K3ZIP8_SETIT	7.3e-28	55.64	Patatin OS=Setaria italica GN=SETIT_026450mg PE=3 SV=1	[more]

BLAST of CmoCh04G005820 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G33270.1	7.4e-24	67.57	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protei...	[more]

BLAST of CmoCh04G005820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449464490\|ref\|XP_004149962.1\|	4.5e-31	61.65	PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ...	[more]
gi\|659112152\|ref\|XP_008456089.1\|	4.5e-31	61.65	PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo]	[more]
gi\|223531953\|gb\|EEF33766.1\|	4.7e-28	56.39	conserved hypothetical protein [Ricinus communis]	[more]
gi\|1000947723\|ref\|XP_002528608.2\|	4.7e-28	56.39	PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ricinus commu...	[more]
gi\|1009151621\|ref\|XP_015893646.1\|	6.1e-28	55.64	PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ziziphus juju...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

Vocabulary: **Biological Process**
Term	Definition
GO:0016042	lipid catabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016042	lipid catabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009536	plastid
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G005820.1	CmoCh04G005820.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12406:SF7	BRUMMER, ISOFORM B-RELATED	coord: 31..101 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G005820	CmaCh04G005470	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G005820	Cp4.1LG01g01640	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G005820	Carg13191	Silver-seed gourd	carcmoB0058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G005820	Silver-seed gourd	carcmoB0899
CmoCh04G005820	Cucumber (Chinese Long) v3	cmocucB0814
CmoCh04G005820	Watermelon (97103) v2	cmowmbB735
CmoCh04G005820	Wax gourd	cmowgoB0849
CmoCh04G005820	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G005820	Cucumber (Gy14) v1	cgycmoB0012
CmoCh04G005820	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G005820	Wild cucumber (PI 183967)	cmocpiB698
CmoCh04G005820	Cucumber (Chinese Long) v2	cmocuB687
CmoCh04G005820	Melon (DHL92) v3.5.1	cmomeB683
CmoCh04G005820	Watermelon (Charleston Gray)	cmowcgB660
CmoCh04G005820	Watermelon (97103) v1	cmowmB699
CmoCh04G005820	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G005820	Bottle gourd (USVL1VR-Ls)	cmolsiB683
CmoCh04G005820	Cucumber (Gy14) v2	cgybcmoB386
CmoCh04G005820	Melon (DHL92) v3.6.1	cmomedB774