CmaCh04G005470 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G005470
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPatatin
LocationCma_Chr04 : 2780523 .. 2786384 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTACGTGTTACACACTGCCAATTTATTGGCTTTAATAGCTGCATTTTAAAAAAAAACCAACTTTTAAAAAAATTTATGTATATTTTTTAGATTTTTTCTTTTTAAGCTTAAAGGTATATTATACAATTTTGCGATTAAAAGCCACGCGCCTGAAAAGGAGAGTGAAAGGGTAGCAATAATGTGAAGTTGTGGACGCCCCACTCCTCTCGCTCTCTCTCAGCCTGAGAGGTTATGATCAGTGATGTCGTTTGGCTCTTCTTTTCAATTATTTTTTTCTTTTTTTTAATATTAATTTTTTTAATTTTATTTTATAACTCTTATAAATCTTGTGCATCAATTTTATGTTATATTTAATCAATTTTAATTGCATTATTAAAATTTTAATTTTATATTCTTTTTTTTTGTGAAATTTAAAAATTATAGTTCGCTAATTTATTATATTATTTTTTTAAAAAATCAGAGATAAATTAGATCGAATATTAAAATTTTACAACCTAAACTTGTAATTGACTAAATAATAATAATAAAGATAAATCAACATGACATATGATTCCGATTCTTTGAATATCATAGAGATTTATATCAATTTAGCCCTATATATTTTAAATATGTATAAAATATTAAATAATAAATTGAGTTATATTTAAATTGATATATGGATGTGGTGGGCAATTTTTCGGGCAGTTTTTTTTTTTTTTTATAATTCAATTTACTAATACGACAAAAATATAAATAAATTTATGAGTTTGATATGGATTAAAAATTATTAAATTTTCTGTTGTATTTAGAATTATTTATATAAGAGAATTTAAATGGATTTTTTTTACAATAAAATTTGATTTTAATAATTAAAACGTATTTTAAAGTAATTTTTATATATTTTTAAATCACAAACAAGATACATTCAATTATTATCCATTTATGGTCTTTGTACTTTTTTCATTGGACAAATCTACCCCTACATGGGATACTTCTATTTTTTGTCTTCATTTGACCAAATTTTATTTATTACTTAAAAAGTATGATTGGTAATTATTGAAAAATAGCATTTTTTTTATGTGTATTATTTTATAAATAAATACAATCGGTTGAAATATATATTTTGATATGCCTCCTTCGGTAAAAGTCTACTCTTATCTTTGTCTGAAAATACTCTGCTATGGCTCTCGCACGGTTAAACTTTGTATTATGGCTTTCACATGTTCTTGTCTTGATTTGAAAACACTCAGTCACGGTTCTCAAACAATCGAGCATTGAAAAAGATATTTTACTAATAATAGTGTGTATTCTCCTGTCGTAGCTTAGTACGACGGTTGAGTATGGGCGAAAAATATACTCTTAGCTATTAAAAGGTTCAAATTTCATACCCGAAAAAAATATTTCGTCAAACATATGATTTAAAGTAATAATTAAATGTTATTATATGGTGATATATTTTGTTTATTATGGGCCTACGTGTCATTGTGTCTCCAAAGAGCCTAACATTATTAAAGCCTTTCTCATGCATGCACGTAGATTTTGTTTGTACGTATTAAAAATTCAACTTTTTTGTCCATAAATAATTGACCTAGCTTGATTACAAAAGATCACATGCCACGTCACACTATTTTATTTATTTTTTATAATAATACTAATATATATTACTCGTACGATTATGCTGAGTTTGGTTGGATACGCTCTAAGCTTTAAAATATAAGGTAATACGAGGATAATATAAGGACACACAGTATGGACTAAAGGCACGATGATAATTATAAAGACAAGTCAGAGAAGAACAAACCCTTAAAAAGACCCATTAAAGAGCTTGAAAGAACATAACTTGAGGACAAGTACACTCAAGGTAAGATAAGAACAGTAAATTTTTGGGACGAAAGTTCTTAAGAAAGGGAAAATTGTAAGACCGCAGTGTATCTTTCCATTTATTTTATTGTTATTTCCATTTATTAGTATTTTCATATCTTTGTAATTTATTTAATTATAAATAAGACACAACTTTCACACCATTTAAGTGTGGTGGATTAATCAAACATTCACACACACAGTGATTGTTTTAAAAAAAGGAAAAAAAAAAAACATCAATTTAAATTATACCTAGCCGTTCGATCGTGGACGGTTTTTCACGGTCAAAGTCAAACGATCTTCATAGCCGTTATAGCCATCGCTTAGTTGGACGCCAGCTGTCTCGGCCACAGGGCCTTTCACACGGATCATATAAATTTCTCCCGCACTCGCACTCTCTTCTGCTTCAGCACATTCTCCCACTAGAATCAGAGCGCTCCATCAACGACCTCTTTCCCTCTCGAGTGTTCTTGCCGAAATCAAACGCTGCTAGATCATTACCAGGAAATCAGAGGAAGAGATAGCAGAATCGGAAGAAGTTTTTCGCGTCGTATCGGTGATGAAAAACAGAGGTAATGTAACTTCATTCAGCCTTTTAGTTTTGTGGATAGTTCGCTCTTGACTATTCTGTTCTGGGTTTGGAATTTTAAGGGTACAGCCGGCTGTTCCGATTTTAGGGTTCACTGGAGAACTCAGAGGTTAATCAAAGGATTGTTCATTGTTTCTTTTTCTTTTGCCTGTTATCGACATCTTTTGTATTTTTCGTGGTTTCGATTAAGGAGGATTAGGGCGTTTTTAGTAGGTTGATTGCTTCCATGGAAACGTGGTTTTTTTGTATATCGTGTATCGCAAGTTTCAATTTATCCTCTTGCTCTAGGATCATTGTGAAACGGGAGATTTGCAGTTCTTTCTTTACTCATCTACTGGTTTAAATTTTAACGTCTTCTCATTTGAAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGGTATTTTAGTTTCACACCCTCTTGAATGTTCTTAATTTTCCTAGTTGGGTAATGACCCTGGGCTGAAATAACGCTTTTGTGTAGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACCACGCGTTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTATTTAATTGATAAATTTCTCAATGGCTTTTCGTATTTCAGTCACCCTGAAATTTTGCTTTTGGACGGTGTCGCAGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGGTAAATGAGTTCGACAAAGCTCGTCCAACTAGTAGACACATTGTTGTTTTCTCTTTGTAGTTTAGTTTGATCAAACTCTTGCATGTTCTGCATCATATCAGCTTTTCAACTGGGCTGGTGGAGGACGCGGTTGTAACTAGCTGAAGCATAGAGTTATGATGGCGAATCAATCTAAATGGAATATGTAGCAGGCTTGGTGGTAAGTGCTTGTCTTAAACCCAAAACTTTCTGGATTGCTGCTGATCTTACTGCCTCAAAATGGTTAGATACACATATGAATCCCTTTAACAGAATAGAACAAAAGCCTTCATTCATGAATGTGAAGATAAAAATAATTATACAGGTAGATATCAAAAGTCCTGAGTTTATGATGGCCAAGTACAACATTCTCAGGATTTACATGTGCATTTTGCTGCTATTTTACTACTTTCTCAGTACAAGTACAACATTCTTGTATTTTGTTTTCTTCATACAGTATATGCGTTTGTCTTTTGGCACATCCAATGACTAAGGTTAATACCAGAAACTGCGAAGCTGCTGCAATCGACTGAACCATCCTAACTAGTTGACTGTGCTTCAATCCAGCGACAATTTTGTACTTCAGGCTCTGAAATTACAGCCAAACTGGACCAAGGAACCAACCCACCTGGGTTTCTATCAAACAATTTCAACTTCTCCAAGAATCAAACTTCAATTGATTTTTATTAGACTAATTCAATTTGTGAGGGTTAAATTGAGATTAAACTAGAAAACAGGGTAGATGGATGATTTAGTTAAATCATTGTGATTTGATTATTTATGGCTTTTTAGTACGATTGTTTAGTTGAAATGTTCAAAAAAAAAGTCGAAAATAGAATCTTTTTATTAGAATCAGAACAAGTCGGAGTACAAACTCATAAAAGACTGGAAAAGGACTGAAGGACACTAGGATGATTATAAGAACAATTATAAGAACAACACAGAGAAGGACAAACTTGTAAAAAGATCCTCAAGGAATTTGGGAGGACATAACTAAGAACGAGTAGTACTGGAATGAACTAGAGGAACCTCCAAGATACAACACTTCAAAAAATAATGTCGATTATGTCAAGCCTTGTTTGGTATGATGAAGGTCATATGTCGACGCTCTAAGATAGGTAACAAAATGTTAACCAAGAAAGACTATTAATCTTAACAAAAAAAAGATTGAGAAGGCAGTCAAAAGGAACAAATGTTGGAATAAGTCCATCGCCTCCAGACGCAAGTTAAGGACTAAAGGATGCAAGGACGATTATAAGGACAAGGTAGAGAAGGACAAACTCATAAAAAAGACCCTTAAGGAACTTGGAACGGCATAAAGAAGAAGAAGTAGCTGGGTATAAAGAAGGTCATACGCCTTAAACTCCCAGATACAAGGTAACACAAGAATTACTAAGGAACACTTATATTCTCAAAAAAAGATGTTAAGAAGATAGTCAATAGGAAAAATGCCGGAATAAGTCCATGGCCTAAAATCATAAGTTAATAACCTCAAGTAAGGACAAGCCGAAGAAAGACAAACCAAGAACATGGAAGGACATAACTCAGAACAAGTAGTACAAGGAGGAACAAAAGGAATCTGTAAGATACAACCTTCAAGGAATAAGATTGATTATGTCAAGGCTTGTTGAGCATAAGGAAGGCCGAACGCCCTAAACTCAAAGATATTAGGTAGCACAAGGATTACCAAGGAAAGCTTCTATTTTCCACCAAAGATATTGAGAAGATAGTCAAAAGGCACAAACGTCAAGGCTTGTTGGGTATAAGGAATGCAATACACCCTAAACTCGAGACATAAGTTAAGGACTAAATGATGCAAGGACGATTTTAAGGACAAGCTTGTAAAAAGACCCTCGAAGAAATTGGAATAAGATTCAACCCTTAAGAAATAATAGAAATTATGATTATTCATAACATAAATAGTTTCTAATAAATTTTGAACTTTTCACGGTTGTGATTATTTAGTTCTTATATTTTATATATTTTAATAGGTCTTCGAATAATTATTAGTTTTGAAATTTTGATTTTGATTTTGAATTTTTTTAATTAAATAAAATAATTTAGAAAAACTGAGATGGAAGTAAAATTTATAAATTTGATTTCAAAATATGAAAAAGAAAAAAATCAAATGGAGACTAAAATTAGTAAATTAATTTTTTTATTTTAGGAATTTTTTAGCTTATTTAATTTTGTAGCTCAACAATATTTAGGAAGTGTGAAGATTCCAACTTCTTACTTTACATCTTAGTTGAAGGCTTATTTGCTATGTTCACTTTAGCTGTATTATATGAATCTTACACGAATCTGGGAATCTGGATTCCAAATCTTGATCAGCATATAATGAGTTTGTTAATCGAATTAGTTTAAAGGTTTCCATCCCATCTTCTTCCCCATAATCATGGCGGATGGAATTTTTGGGAATTGAAATTGACCCATCGCTACCAAACTTGTTTTGCAGCGCCACAAGAACAATCCCACAGGAAATTGGCTGTAGGGGCGTGGCGTTTACCGCATGAGAAGCAGCAGAAGGTATGGGAATGGAGATGGCGACTGGAAGCAGCGACTATGGCAATTAACCACATCCCATGCTCTCCCGCCCATCTCTCTCGATCTCAACCCCTTCTTTAA

mRNA sequence

ATGAAAAATCAGAGCGCTCCATCAACGACCTCTTTCCCTCTCGAGTGTTCTTGCCGAAATCAAACGCTGCTAGATCATTACCAGGAAATCAGAGGAAGAGATAGCAGAATCGGAAGAAGTTTTTCGCGTCGTATCGGTGATGAAAAACAGAGGGTACAGCCGGCTGTTCCGATTTTAGGGTTCACTGGAGAACTCAGAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACCACGCGTTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGCTTTTCAACTGGGCTGGTGGAGGACGCGGTTCGCCACAAGAACAATCCCACAGGAAATTGGCTGTAGGGGCGTGGCGTTTACCGCATGAGAAGCAGCAGAAGGTATGGGAATGGAGATGGCGACTGGAAGCAGCGACTATGGCAATTAACCACATCCCATGCTCTCCCGCCCATCTCTCTCGATCTCAACCCCTTCTTTAA

Coding sequence (CDS)

ATGAAAAATCAGAGCGCTCCATCAACGACCTCTTTCCCTCTCGAGTGTTCTTGCCGAAATCAAACGCTGCTAGATCATTACCAGGAAATCAGAGGAAGAGATAGCAGAATCGGAAGAAGTTTTTCGCGTCGTATCGGTGATGAAAAACAGAGGGTACAGCCGGCTGTTCCGATTTTAGGGTTCACTGGAGAACTCAGAGTTCTTGAAAAGTTTCTTCCATCAATGCAGTTTTCACTTCTTCCTTTATTCCAGGGTGGATACCTAGCGCCAAGACCCGTCACAGTCTTCCGGAATAGACTACCACGCGTTGATGGTGGTCTAACATTGTTCATGCCACCTACTTCTGCCTCTCAAACGGTGCGTGTATGTGCTTTCCCCGCTACCCGATTGGGCTTTGAAGGGATTGGGATCAGTCCAGACTGCAACCCTGAAAACAGAGCTGGGCCAAGAGAGCTTTTCAACTGGGCTGGTGGAGGACGCGGTTCGCCACAAGAACAATCCCACAGGAAATTGGCTGTAGGGGCGTGGCGTTTACCGCATGAGAAGCAGCAGAAGGTATGGGAATGGAGATGGCGACTGGAAGCAGCGACTATGGCAATTAACCACATCCCATGCTCTCCCGCCCATCTCTCTCGATCTCAACCCCTTCTTTAA

Protein sequence

MKNQSAPSTTSFPLECSCRNQTLLDHYQEIRGRDSRIGRSFSRRIGDEKQRVQPAVPILGFTGELRVLEKFLPSMQFSLLPLFQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCNPENRAGPRELFNWAGGGRGSPQEQSHRKLAVGAWRLPHEKQQKVWEWRWRLEAATMAINHIPCSPAHLSRSQPLL
Homology
[Close]
BLAST of CmaCh04G005470 vs. TrEMBL
Match: A0A0A0L746_CUCSA (Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.7e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRPVTVFRNRL  +DGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCN
Sbjct: 276 FIPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCN 335

Query: 143 PENRAGPRELFNWA 157
           PENRAGPRELFNWA
Sbjct: 336 PENRAGPRELFNWA 348

[Close]
BLAST of CmaCh04G005470 vs. TrEMBL
Match: B9SRI9_RICCO (Patatin OS=Ricinus communis GN=RCOM_1411270 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.8e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T+FRNRL  +DGGLTLFMPPTSA+QT+RVCAFPA+RLG +GIGISPDCN
Sbjct: 288 FIPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCN 347

Query: 143 PENRAGPRELFNWA 157
           PENRA PRELFNWA
Sbjct: 348 PENRASPRELFNWA 360

[Close]
BLAST of CmaCh04G005470 vs. TrEMBL
Match: J3N8X1_ORYBR (Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.8e-28
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T FRNRL  +DGGLTLFMPPTSAS+TVR+CAFPA+RLG EGIGISPDCN
Sbjct: 82  FIPGYLAPRPATFFRNRLC-IDGGLTLFMPPTSASETVRICAFPASRLGLEGIGISPDCN 141

Query: 143 PENRAGPRELFNWA 157
           PENRA PR+LFNWA
Sbjct: 142 PENRANPRQLFNWA 154

[Close]
BLAST of CmaCh04G005470 vs. TrEMBL
Match: A0A0D3HMW2_9ORYZ (Uncharacterized protein OS=Oryza barthii PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T FRNRL  +DGGLTLFMPPTSAS+TVR+CAFPA+RLG +GIGISPDCN
Sbjct: 82  FIPGYLAPRPATFFRNRLC-IDGGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCN 141

Query: 143 PENRAGPRELFNWA 157
           PENRA PR+LFNWA
Sbjct: 142 PENRASPRQLFNWA 154

[Close]
BLAST of CmaCh04G005470 vs. TrEMBL
Match: B9GB46_ORYSJ (Patatin OS=Oryza sativa subsp. japonica GN=OsJ_34197 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T FRNRL  +DGGLTLFMPPTSAS+TVR+CAFPA+RLG +GIGISPDCN
Sbjct: 244 FIPGYLAPRPATFFRNRLC-IDGGLTLFMPPTSASETVRICAFPASRLGLQGIGISPDCN 303

Query: 143 PENRAGPRELFNWA 157
           PENRA PR+LFNWA
Sbjct: 304 PENRASPRQLFNWA 316

[Close]
BLAST of CmaCh04G005470 vs. TAIR10
Match: AT1G33270.1 (AT1G33270.1 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-23
Identity = 51/74 (68.92%), Postives = 58/74 (78.38%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T+FRNRL  VDGGLTLFMPPT+A++TVRVCAF A+    +GI I PDCN
Sbjct: 251 FIPGYLAPRPATMFRNRLC-VDGGLTLFMPPTAAAKTVRVCAFSASNFKLKGIEICPDCN 310

Query: 143 PENRAGPRELFNWA 157
           P NRA  R+L NWA
Sbjct: 311 PLNRATSRQLLNWA 323

[Close]
BLAST of CmaCh04G005470 vs. NCBI nr
Match: gi|449464490|ref|XP_004149962.1| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRPVTVFRNRL  +DGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCN
Sbjct: 276 FIPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCN 335

Query: 143 PENRAGPRELFNWA 157
           PENRAGPRELFNWA
Sbjct: 336 PENRAGPRELFNWA 348

[Close]
BLAST of CmaCh04G005470 vs. NCBI nr
Match: gi|659112152|ref|XP_008456089.1| (PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 3.9e-31
Identity = 68/74 (91.89%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRPVTVFRNRL  +DGGLTLFMPPTSASQTVRVCAFPA+RLGFEGIGISPDCN
Sbjct: 279 FIPGYLAPRPVTVFRNRLC-IDGGLTLFMPPTSASQTVRVCAFPASRLGFEGIGISPDCN 338

Query: 143 PENRAGPRELFNWA 157
           PENRAGPRELFNWA
Sbjct: 339 PENRAGPRELFNWA 351

[Close]
BLAST of CmaCh04G005470 vs. NCBI nr
Match: gi|223531953|gb|EEF33766.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T+FRNRL  +DGGLTLFMPPTSA+QT+RVCAFPA+RLG +GIGISPDCN
Sbjct: 288 FIPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCN 347

Query: 143 PENRAGPRELFNWA 157
           PENRA PRELFNWA
Sbjct: 348 PENRASPRELFNWA 360

[Close]
BLAST of CmaCh04G005470 vs. NCBI nr
Match: gi|1000947723|ref|XP_002528608.2| (PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ricinus communis])

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T+FRNRL  +DGGLTLFMPPTSA+QT+RVCAFPA+RLG +GIGISPDCN
Sbjct: 304 FIPGYLAPRPATMFRNRLC-IDGGLTLFMPPTSAAQTIRVCAFPASRLGLQGIGISPDCN 363

Query: 143 PENRAGPRELFNWA 157
           PENRA PRELFNWA
Sbjct: 364 PENRASPRELFNWA 376

[Close]
BLAST of CmaCh04G005470 vs. NCBI nr
Match: gi|1002872379|ref|XP_006662990.2| (PREDICTED: patatin-like phospholipase domain-containing protein 2 [Oryza brachyantha])

HSP 1 Score: 132.9 bits (333), Expect = 6.8e-28
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 

Query: 83  FQGGYLAPRPVTVFRNRLPRVDGGLTLFMPPTSASQTVRVCAFPATRLGFEGIGISPDCN 142
           F  GYLAPRP T FRNRL  +DGGLTLFMPPTSAS+TVR+CAFPA+RLG EGIGISPDCN
Sbjct: 82  FIPGYLAPRPATFFRNRLC-IDGGLTLFMPPTSASETVRICAFPASRLGLEGIGISPDCN 141

Query: 143 PENRAGPRELFNWA 157
           PENRA PR+LFNWA
Sbjct: 142 PENRANPRQLFNWA 154

The following BLAST results are available for this feature:
BLAST of CmaCh04G005470 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh04G005470 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L746_CUCSA2.7e-3191.89Patatin OS=Cucumis sativus GN=Csa_3G214570 PE=3 SV=1[more]
B9SRI9_RICCO2.8e-2882.43Patatin OS=Ricinus communis GN=RCOM_1411270 PE=3 SV=1[more]
J3N8X1_ORYBR4.8e-2882.43Uncharacterized protein OS=Oryza brachyantha PE=4 SV=1[more]
A0A0D3HMW2_9ORYZ1.1e-2781.08Uncharacterized protein OS=Oryza barthii PE=4 SV=1[more]
B9GB46_ORYSJ1.1e-2781.08Patatin OS=Oryza sativa subsp. japonica GN=OsJ_34197 PE=3 SV=1[more]
BLAST of CmaCh04G005470 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33270.12.4e-2368.92 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protei... [more]
BLAST of CmaCh04G005470 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464490|ref|XP_004149962.1|3.9e-3191.89PREDICTED: patatin-like phospholipase domain-containing protein 2 [Cucumis sativ... [more]
gi|659112152|ref|XP_008456089.1|3.9e-3191.89PREDICTED: uncharacterized protein LOC103496128 [Cucumis melo][more]
gi|223531953|gb|EEF33766.1|4.0e-2882.43conserved hypothetical protein [Ricinus communis][more]
gi|1000947723|ref|XP_002528608.2|4.0e-2882.43PREDICTED: patatin-like phospholipase domain-containing protein 4 [Ricinus commu... [more]
gi|1002872379|ref|XP_006662990.2|6.8e-2882.43PREDICTED: patatin-like phospholipase domain-containing protein 2 [Oryza brachya... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
Vocabulary: Biological Process
TermDefinition
GO:0016042lipid catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016042 lipid catabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009536 plastid
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G005470.1CmaCh04G005470.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12406:SF7BRUMMER, ISOFORM B-RELATEDcoord: 86..156
score: 6.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G005470CmoCh04G005820Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G005470Cp4.1LG01g01640Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G005470Carg13191Silver-seed gourdcarcmaB0055
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G005470Cucumber (Gy14) v2cgybcmaB410
CmaCh04G005470Melon (DHL92) v3.6.1cmamedB777
CmaCh04G005470Silver-seed gourdcarcmaB0925
CmaCh04G005470Cucumber (Chinese Long) v3cmacucB0829
CmaCh04G005470Watermelon (97103) v2cmawmbB763
CmaCh04G005470Wax gourdcmawgoB0852
CmaCh04G005470Cucurbita maxima (Rimu)cmacmaB351
CmaCh04G005470Cucumber (Gy14) v1cgycmaB0012
CmaCh04G005470Cucumber (Gy14) v1cgycmaB0324
CmaCh04G005470Cucurbita moschata (Rifu)cmacmoB701
CmaCh04G005470Wild cucumber (PI 183967)cmacpiB705
CmaCh04G005470Cucumber (Chinese Long) v2cmacuB697
CmaCh04G005470Cucumber (Chinese Long) v2cmacuB722
CmaCh04G005470Melon (DHL92) v3.5.1cmameB691
CmaCh04G005470Watermelon (Charleston Gray)cmawcgB659
CmaCh04G005470Watermelon (97103) v1cmawmB703
CmaCh04G005470Cucurbita pepo (Zucchini)cmacpeB715
CmaCh04G005470Bottle gourd (USVL1VR-Ls)cmalsiB690