CmoCh04G004270 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA
BLAST of CmoCh04G004270 vs. Swiss-Prot
Match: AGP1_ARATH (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2) HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08 Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TrEMBL
Match: A0A0A0KZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1) HSP 1 Score: 128.3 bits (321), Expect = 6.5e-27 Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TrEMBL
Match: I1KR06_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08 Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TrEMBL
Match: A0A0S3R055_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G150600 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08 Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TrEMBL
Match: A0A0L9TF74_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan630s002000 PE=4 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08 Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TrEMBL
Match: A0A0R0G3N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G055900 PE=4 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08 Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 1
BLAST of CmoCh04G004270 vs. TAIR10
Match: AT5G64310.1 (AT5G64310.1 arabinogalactan protein 1) HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09 Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1
BLAST of CmoCh04G004270 vs. NCBI nr
Match: gi|449438995|ref|XP_004137273.1| (PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus]) HSP 1 Score: 128.3 bits (321), Expect = 9.4e-27 Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 1
BLAST of CmoCh04G004270 vs. NCBI nr
Match: gi|356524818|ref|XP_003531025.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max]) HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08 Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 1
BLAST of CmoCh04G004270 vs. NCBI nr
Match: gi|920682289|gb|KOM29061.1| (hypothetical protein LR48_Vigan630s002000 [Vigna angularis]) HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08 Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1
BLAST of CmoCh04G004270 vs. NCBI nr
Match: gi|593792176|ref|XP_007159127.1| (hypothetical protein PHAVU_002G211000g [Phaseolus vulgaris]) HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08 Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1
BLAST of CmoCh04G004270 vs. NCBI nr
Match: gi|356554734|ref|XP_003545698.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max]) HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08 Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |