CmoCh04G004270.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G004270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 2122166 .. 2122531 (-)
Sequence length	366

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA

mRNA sequence

ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA

Coding sequence (CDS)

ATGGCGATTAGAGGTTTTGTGGTGATGGTTACGGTGGCGATGTTGATCGTTTCCGCAATCGCGCAATCGCCGTCGGCATCTCCGTCATTGTCTCCGACTAAATCGCCGTCTAAGGCTCCGTCGATTTCTCCGTCTGTAGAGTCGCCGAAATCCTCTCCTGCTGCAGCGCCTACTCCAGCATCTTTGAAGTCTCCGCCATCTCCTCCTGCTGCTTCTCCGTCTCTGTCTCCTTCTCCTTCTCCATCGTCGATATCCTCTCCTCCAGCAGACGCTCCTGCTCCGTCTGGTAACGCCGCCGCTTCGATCTCTTTCTCGATGTTCGGATCTGTGGCCACTGTGCTGTACGCCATCGTTTTGATGATCTGA

Homology

[Close]

BLAST of CmoCh04G004270.1 vs. Swiss-Prot
Match: AGP1_ARATH (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 4.4e-08
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 4   RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSKAPSISPSVE-SPKSSPAAA 63
           +  V ++  A+LI SA+AQSP+ +PS      +SP  SP K  + +P+ E SP  SPAAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 122
            TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP P+   A S  F+ FGSVA +L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]

BLAST of CmoCh04G004270.1 vs. TrEMBL
Match: A0A0A0KZB8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 6.5e-27
Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
           MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS +    SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60

Query: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 120
           SLKSPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN AASI+FS+FGSVA  LYA+V
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

Query: 121 LMI 122
           LMI
Sbjct: 121 LMI 119

[Close]

BLAST of CmoCh04G004270.1 vs. TrEMBL
Match: I1KR06_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.3e-08
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP------SKAPSISPSVESPKSSPA 60
           MA    V+ +  A+L+ S +AQSP++SP+LSP ++P      S +P+ISPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  A------APTPASLKSPPSPP---AASPSLSPSPSPSSISSPPADAPAPSGNAAASISFS 120
           A      +P+P S+ SPPSPP   + SP+  PS +PS+IS+PP  APAPS N AA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

Query: 121 MFGSVATVLYAIVLMI 122
           + GS A V++A  L++
Sbjct: 121 VAGSAAVVVFAAALLM 136

[Close]

BLAST of CmoCh04G004270.1 vs. TrEMBL
Match: A0A0S3R055_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G150600 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP-------SKAPSISPSVESPKSSP 60
           MA    V  +  A+L+ SA+AQSP++SP+LSP ++P       S +P+ISP+ ESP SSP
Sbjct: 1   MANSTVVFTLIAALLVTSALAQSPASSPALSPKRTPVAATPRSSPSPAISPAAESPSSSP 60

Query: 61  AA------APTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMF 120
            A      +P+P  + SPPSPP  SP+ +PS +PS+IS+PP +AP PS N AA   F++ 
Sbjct: 61  PAPAPNAPSPSPTDIDSPPSPPV-SPAGAPSVTPSAISAPPTEAPTPSQNGAALNRFTLA 120

Query: 121 GSVATVLYAIVLMI 122
           GS A V+ A  L +
Sbjct: 121 GSAAAVVLAAALFM 133

[Close]

BLAST of CmoCh04G004270.1 vs. TrEMBL
Match: A0A0L9TF74_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan630s002000 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-08
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP-------SKAPSISPSVESPKSSP 60
           MA    V  +  A+L+ SA+AQSP++SP+LSP ++P       S +P+ISP+ ESP SSP
Sbjct: 1   MANSTVVFTLIAALLVTSALAQSPASSPALSPKRTPVAATPRSSPSPAISPAAESPSSSP 60

Query: 61  AA------APTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMF 120
            A      +P+P  + SPPSPP  SP+ +PS +PS+IS+PP +AP PS N AA   F++ 
Sbjct: 61  PAPAPNAPSPSPTDIDSPPSPPV-SPAGAPSVTPSAISAPPTEAPTPSQNGAALNRFTLA 120

Query: 121 GSVATVLYAIVLMI 122
           GS A V+ A  L +
Sbjct: 121 GSAAAVVLAAALFM 133

[Close]

BLAST of CmoCh04G004270.1 vs. TrEMBL
Match: A0A0R0G3N2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G055900 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-08
Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
           MA    ++++ VAM + SA+AQSP++SP  +   +P K  + SPS  S  S PAAAP+P+
Sbjct: 1   MAFSSTLLLLLVAMFVFSAVAQSPASSPEFA--AAPPKTATPSPS--SSMSPPAAAPSPS 60

Query: 61  S--LKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 117
           S  + SPPSPP + P+ SPSP  SPSSISSPP+DAPAPS NAA S  F+  GSV   L A
Sbjct: 61  SSVVSSPPSPPTSVPASSPSPSISPSSISSPPSDAPAPSENAAVSNGFAAVGSVVVGLVA 116

[Close]

BLAST of CmoCh04G004270.1 vs. TAIR10
Match: AT5G64310.1 (AT5G64310.1 arabinogalactan protein 1)

HSP 1 Score: 58.9 bits (141), Expect = 2.5e-09
Identity = 62/127 (48.82%), Postives = 81/127 (63.78%), Query Frame = 1


Query: 4   RGFVVMVTVAMLIVSAIAQSPSASPS------LSPTKSPSKAPSISPSVE-SPKSSPAAA 63
           +  V ++  A+LI SA+AQSP+ +PS      +SP  SP K  + +P+ E SP  SPAAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEVSPSPSPAAA 64

Query: 64  PTPASLKSPPSPPAA-SPSL-SPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVL 122
            TP S  SPPSPP A SP+  SP+ SPS+IS  P +AP P+   A S  F+ FGSVA +L
Sbjct: 65  LTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVML 124

[Close]

BLAST of CmoCh04G004270.1 vs. NCBI nr
Match: gi|449438995|ref|XP_004137273.1| (PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 9.4e-27
Identity = 90/123 (73.17%), Postives = 102/123 (82.93%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
           MAI   V ++ V+  I SA AQSP+ASPSLSPTKSPSKAPS +    SPKSSPA APTP+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPAASPSLSPTKSPSKAPSHN----SPKSSPAVAPTPS 60

Query: 61  SLKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIV 120
           SLKSPPSPP++SPS SPSP  SP+SISSPPADAPAPSGN AASI+FS+FGSVA  LYA+V
Sbjct: 61  SLKSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVV 119

Query: 121 LMI 122
           LMI
Sbjct: 121 LMI 119

[Close]

BLAST of CmoCh04G004270.1 vs. NCBI nr
Match: gi|356524818|ref|XP_003531025.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 3.3e-08
Identity = 62/136 (45.59%), Postives = 88/136 (64.71%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP------SKAPSISPSVESPKSSPA 60
           MA    V+ +  A+L+ S +AQSP++SP+LSP ++P      S +P+ISPS  SP SSP 
Sbjct: 1   MACTTVVLTLVAALLVTSVVAQSPASSPALSPKRTPVATPQKSPSPAISPSAVSPSSSPP 60

Query: 61  A------APTPASLKSPPSPP---AASPSLSPSPSPSSISSPPADAPAPSGNAAASISFS 120
           A      +P+P S+ SPPSPP   + SP+  PS +PS+IS+PP  APAPS N AA   F+
Sbjct: 61  APVVNTPSPSPNSVDSPPSPPQSPSVSPAGVPSVTPSAISAPPTGAPAPSQNGAALNRFT 120

Query: 121 MFGSVATVLYAIVLMI 122
           + GS A V++A  L++
Sbjct: 121 VAGSAAVVVFAAALLM 136

[Close]

BLAST of CmoCh04G004270.1 vs. NCBI nr
Match: gi|920682289|gb|KOM29061.1| (hypothetical protein LR48_Vigan630s002000 [Vigna angularis])

HSP 1 Score: 66.2 bits (160), Expect = 4.4e-08
Identity = 61/134 (45.52%), Postives = 86/134 (64.18%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP-------SKAPSISPSVESPKSSP 60
           MA    V  +  A+L+ SA+AQSP++SP+LSP ++P       S +P+ISP+ ESP SSP
Sbjct: 1   MANSTVVFTLIAALLVTSALAQSPASSPALSPKRTPVAATPRSSPSPAISPAAESPSSSP 60

Query: 61  AA------APTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMF 120
            A      +P+P  + SPPSPP  SP+ +PS +PS+IS+PP +AP PS N AA   F++ 
Sbjct: 61  PAPAPNAPSPSPTDIDSPPSPPV-SPAGAPSVTPSAISAPPTEAPTPSQNGAALNRFTLA 120

Query: 121 GSVATVLYAIVLMI 122
           GS A V+ A  L +
Sbjct: 121 GSAAAVVLAAALFM 133

[Close]

BLAST of CmoCh04G004270.1 vs. NCBI nr
Match: gi|593792176|ref|XP_007159127.1| (hypothetical protein PHAVU_002G211000g [Phaseolus vulgaris])

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSP------SKAPSISPSVESPKSSPA 60
           MA    V  +  A+L+ SA+AQ P++SP+LSP ++P      S +P++SPS +SP SSP 
Sbjct: 1   MANSTVVFTLVAALLVASALAQFPASSPALSPKRTPVATPRSSPSPALSPSAKSPSSSPP 60

Query: 61  A------APTPASLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFG 120
                  +P+P  + SPPSPP+ SP+ +PS +PS+IS+PP +AP P  N AA   F++ G
Sbjct: 61  VPSLNGPSPSPTGIDSPPSPPSDSPAGTPSVTPSAISAPPTEAPTPLQNGAALNRFTLAG 120

[Close]

BLAST of CmoCh04G004270.1 vs. NCBI nr
Match: gi|356554734|ref|XP_003545698.1| (PREDICTED: classical arabinogalactan protein 1-like [Glycine max])

HSP 1 Score: 65.9 bits (159), Expect = 5.7e-08
Identity = 63/120 (52.50%), Postives = 81/120 (67.50%), Query Frame = 1


Query: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60
           MA    ++++ VAM + SA+AQSP++SP  +   +P K  + SPS  S  S PAAAP+P+
Sbjct: 1   MAFSSTLLLLLVAMFVFSAVAQSPASSPEFA--AAPPKTATPSPS--SSMSPPAAAPSPS 60

Query: 61  S--LKSPPSPPAASPSLSPSP--SPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 117
           S  + SPPSPP + P+ SPSP  SPSSISSPP+DAPAPS NAA S  F+  GSV   L A
Sbjct: 61  SSVVSSPPSPPTSVPASSPSPSISPSSISSPPSDAPAPSENAAVSNGFAAVGSVVVGLVA 116

The following BLAST results are available for this feature:

BLAST of CmoCh04G004270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
AGP1_ARATH	4.4e-08	48.82	Classical arabinogalactan protein 1 OS=Arabidopsis thaliana GN=AGP1 PE=2 SV=2	[more]

BLAST of CmoCh04G004270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZB8_CUCSA	6.5e-27	73.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G111620 PE=4 SV=1	[more]
I1KR06_SOYBN	2.3e-08	45.59	Uncharacterized protein OS=Glycine max GN=GLYMA_08G070300 PE=4 SV=1	[more]
A0A0S3R055_PHAAN	3.0e-08	45.52	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G150600 PE=...	[more]
A0A0L9TF74_PHAAN	3.0e-08	45.52	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan630s002000 PE=4 SV=1	[more]
A0A0R0G3N2_SOYBN	4.0e-08	52.50	Uncharacterized protein OS=Glycine max GN=GLYMA_15G055900 PE=4 SV=1	[more]

BLAST of CmoCh04G004270.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64310.1	2.5e-09	48.82	arabinogalactan protein 1	[more]

BLAST of CmoCh04G004270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438995\|ref\|XP_004137273.1\|	9.4e-27	73.17	PREDICTED: classical arabinogalactan protein 1-like [Cucumis sativus]	[more]
gi\|356524818\|ref\|XP_003531025.1\|	3.3e-08	45.59	PREDICTED: classical arabinogalactan protein 1-like [Glycine max]	[more]
gi\|920682289\|gb\|KOM29061.1\|	4.4e-08	45.52	hypothetical protein LR48_Vigan630s002000 [Vigna angularis]	[more]
gi\|593792176\|ref\|XP_007159127.1\|	5.7e-08	44.27	hypothetical protein PHAVU_002G211000g [Phaseolus vulgaris]	[more]
gi\|356554734\|ref\|XP_003545698.1\|	5.7e-08	52.50	PREDICTED: classical arabinogalactan protein 1-like [Glycine max]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G004270	CmoCh04G004270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004270.1	CmoCh04G004270.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004270.1.CDS.1	CmoCh04G004270.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G004270.1.exon.1	CmoCh04G004270.1.exon.1	exon