CmoCh04G003860 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G003860
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RAN GTPase 3
Location	Cmo_Chr04 : 1909547 .. 1911786 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATGATTGTAACTTTTAAGTAATTTTGTTTGTAACATTTGAGTTTTTTTATTTTTCTAATTTGGTTTTCTCTGATAGTGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGTAAGATTCATTACTCTATCATCGTCTGTTCAACATTTGTAACTCTTAGGTTACACGCTTCATCTTCATTAAAATCGATTTTTGATTACCTCTAGATTATTATGTTATGAATTACTGAATGTTGACACATAGTGCTTGTTATATATCCATTCGAACTGCGTAGATCCAAAGCGGCAAAGCAAATGAAATGTATGTTTGAATTAGAAAGTTTCAAAAGTTTTTTCAAACAAGAGATGGAGAGTTGGGAATTATATATTGTAGTGGAAGGTTTTGGATCCGACAGCTCCTTGATCTTTTTCACTATTGTGATAATTGTGGCATGACATCTCATGATACTGAAGAAATTGCTTTCTTGTTCTTCCATTTTGACAGTTATTAAATTGCCTACTTGTCAAGGGTTTTTCTTGTTTGGATAGTTGCTTTCTTGGAGCTTCATCTACTGAATGGTTTCTTTTGTATCTTATGAACAGGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTGTAAGCTTTTATGATCCTTTAAGTTCAAACCCGTTCTGTTTTAATTATGTATGTGCGCTCTGATCACTTAAGGATTTTGATGTTCTAGAAAATACGCACTGTGGAGCAGGATGGAAAGACAATTAAACTCCAAATTGTGAGACTTTCTCTCTACACGTGCGCACACACACGTATATATATATTGTGACACACGTATATATATATTGTGACACACGTATATATATATTGTGACATGCACGTATATATATATTGTGACATGCACGTATATATATATTGTGACATGCACGTATATATATATTGTGACACACACATACATACATAGGCTTTCTGCAAGTCCTCTTTTCTGACTTCTGGAGTATTCAGTGGGATACTGCAGGACAGGAGCGTTTTAGGACCATCACTAGTAGCTACTACCGCGGGGCACATGGCATTATAGTAAGTTTTATGCATTATATCTCCGGTATAGCAACTTTTCTCTAATCACAGAACTCTGAGTTTGTTTCCTTCGTTGGTTCAGATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGTAAAAGCGATTTGTCGACTTAAATTACCGAAAGCCTTGGAGGCATGAGAAACCGAGTAAAATTCTTTTGATGATCTCACATGTATGTAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGTATATCTCCCTCTCTTGTGGAGTACTAGTGGGCAGAATTTCAATTGAATGTGTAACGACTCTAGATTTCCACGAACATAATAATTTAAAATAGTATACAGTAGCGATTTTAGGTTACCTAACAATCTAGGGTCGTTACACAATGACACAACAAAAAAAAAAAAACACCAAATATTTCAACTTAGTTTCGTTTTGTAGACCACTTGAACAATTACTACTCTTCATGCTCTGCATCCAGGATGGCTAGTCTGCCTGCGAACAATGCGAGGCCACCGACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAGTTGAGTTGGTTGTTTCTGCCATTGCAAGTGTGCATTGTGCACGTAATATCAAGTGCATTCGAATCTCTCTCTATAAAGTATCTGAAATCCCATTCATTTCAAATAGACCTTGAATTGTCACTCTATACCTTTCTGTATTATCAAAGCAGTAGTATTTCCTTTTTCTTCTTTCCAATACTTGTTTTAAGCTGCCGTGTAGGGAACTTTTAGAGGTACAGTTCAAGCCATCTCTCAGTTTATTTGCCTCATTAATATTTGTTTGGAGAATGCTTGGATGCTTTATGTTTCTGACTTTAGATAGCAAATGGTAGAGCTTAAGAATGCTCAAATTTGTCTTATTTTTTGTGTTGATGGGTCATTTCATAGTTTTCTAA

mRNA sequence

ATGTTCATGATTGTAACTTTTAATGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTAAAATACGCACTGTGGAGCAGGATGGAAAGACAATTAAACTCCAAATTTGGGATACTGCAGGACAGGAGCGTTTTAGGACCATCACTAGTAGCTACTACCGCGGGGCACATGGCATTATAATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGATGGCTAGTCTGCCTGCGAACAATGCGAGGCCACCGACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAGTTGAGTTGGTTGTTTCTGCCATTGCAAGTGTGCATTGTGCACGTAATATCAAGTGCATTCGAATCTCTCTCTATAAAGTATCTGAAATCCCATTCATTTCAAATAGACCTTGAATTGTCACTCTATACCTTTCTGTATTATCAAAGCAGTAGTATTTCCTTTTTCTTCTTTCCAATACTTGTTTTAAGCTGCCGTGTAGGGAACTTTTAGAGGTACAGTTCAAGCCATCTCTCAGTTTATTTGCCTCATTAATATTTGTTTGGAGAATGCTTGGATGCTTTATGTTTCTGACTTTAGATAGCAAATGGTAGAGCTTAAGAATGCTCAAATTTGTCTTATTTTTTGTGTTGATGGGTCATTTCATAGTTTTCTAA

Coding sequence (CDS)

ATGTTCATGATTGTAACTTTTAATGACTACTTGTTCAAGCTCTTGCTTATTGGGGACTCTGGAGTTGGCAAATCATGTCTTCTTTTGAGATTTGCTGATGACTCATATCTGGATAGTTATATTAGTACCATTGGAGTTGATTTTAAAATACGCACTGTGGAGCAGGATGGAAAGACAATTAAACTCCAAATTTGGGATACTGCAGGACAGGAGCGTTTTAGGACCATCACTAGTAGCTACTACCGCGGGGCACATGGCATTATAATTGTTTATGATGTAACAGACCAGGAGAGTTTTGAAAATGTTAAGCAATGGTTAAACGAAATTGACCGTTATGCAAGTGAAAACGTAAACAAGCTTCTAGTTGGCAATAAGTGTGATCTTCCTAATAAAGTAGTGTCCTATGAATCAGCAAAGGCTTTTGCTGATGAGGTTGGGATCCCATTTATGGAGACAAGTGCAAAAGATGCTACCAATGTAGAACAGGCATTTATGGCCATGACTGCTGACATTAAAAATAGGATGGCTAGTCTGCCTGCGAACAATGCGAGGCCACCGACGGTGCAGCTACAGGGGCAACCCGTCAACCAGAAGGGTGGATGTTGTTCTTAG

Homology

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BLAST of CmoCh04G003860 vs. Swiss-Prot
Match: RAD2C_ARATH (Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=2 SV=1)

HSP 1 Score: 345.5 bits (885), Expect = 3.9e-94
Identity = 172/196 (87.76%), Postives = 184/196 (93.88%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  ++PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQ+ GCCS
Sbjct: 186 VQIRGQPVNQQSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. Swiss-Prot
Match: RAD2A_ARATH (Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 343.6 bits (880), Expect = 1.5e-93
Identity = 172/197 (87.31%), Postives = 185/197 (93.91%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYDVTD+ESF NVKQWL+EIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPA-NNARPP 188
             N+ + YE+AKAFADE+GIPFMETSAKDATNVEQAFMAM+A IK RMAS PA NNARPP
Sbjct: 126 TENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPP 185

Query: 189 TVQLQGQPVNQKGGCCS 204
           TVQ++GQPV QK GCCS
Sbjct: 186 TVQIRGQPVAQKNGCCS 202

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BLAST of CmoCh04G003860 vs. Swiss-Prot
Match: RAD2B_ARATH (Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.3e-93
Identity = 172/196 (87.76%), Postives = 183/196 (93.37%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDL 125

Query: 129 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  A+PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQ+ GCCS
Sbjct: 186 VQIRGQPVNQQSGCCS 201

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BLAST of CmoCh04G003860 vs. Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.7e-93
Identity = 175/197 (88.83%), Postives = 184/197 (93.40%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYDVTDQESF NVKQWLNEIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLP-ANNARPP 188
             NKVV+ E+AKAFADE+GIPFMETSAK+ATNV+QAFMAM A IK+RMAS P A NARP 
Sbjct: 126 TANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPA 185

Query: 189 TVQLQGQPVNQKGGCCS 204
           TVQ++GQPVNQK  CCS
Sbjct: 186 TVQIRGQPVNQKTSCCS 202

[Close]

BLAST of CmoCh04G003860 vs. Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 340.1 bits (871), Expect = 1.6e-92
Identity = 170/197 (86.29%), Postives = 182/197 (92.39%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNA-RPP 188
             N+VVSYE+ KA ADE+GIPF+ETSAKDATNVE+AFM M  +IKNRMAS PA NA +P 
Sbjct: 126 AENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPA 185

Query: 189 TVQLQGQPVNQKGGCCS 204
           TVQ++GQPV Q+  CCS
Sbjct: 186 TVQMRGQPVAQQSSCCS 202

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BLAST of CmoCh04G003860 vs. TrEMBL
Match: A0A0A0KUE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025060 PE=4 SV=1)

HSP 1 Score: 387.5 bits (994), Expect = 1.0e-104
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTV 188
           PN+ VSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMAS PANNARPPTV
Sbjct: 126 PNRAVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASQPANNARPPTV 185

Query: 189 QLQGQPVNQKGGCCS 204
           QLQGQPVNQKGGCCS
Sbjct: 186 QLQGQPVNQKGGCCS 200

[Close]

BLAST of CmoCh04G003860 vs. TrEMBL
Match: W9RPK9_9ROSA (Ras-related protein RABD2c OS=Morus notabilis GN=L484_024030 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.8e-99
Identity = 183/196 (93.37%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAKDATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAAEIKNRMASQPMNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TrEMBL
Match: V7CEC3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G224200g PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 6.3e-99
Identity = 182/196 (92.86%), Postives = 190/196 (96.94%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQ+SF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQKGGCCS
Sbjct: 186 VQIRGQPVNQKGGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TrEMBL
Match: Q40203_LOTJA (RAB1C OS=Lotus japonicus GN=rab1C PE=2 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.4e-98
Identity = 182/196 (92.86%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TENKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TrEMBL
Match: I3T7J4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 1.4e-98
Identity = 182/196 (92.86%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TAIR10
Match: AT4G17530.1 (AT4G17530.1 RAB GTPase homolog 1C)

HSP 1 Score: 345.5 bits (885), Expect = 2.2e-95
Identity = 172/196 (87.76%), Postives = 184/196 (93.88%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  ++PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGSKPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQ+ GCCS
Sbjct: 186 VQIRGQPVNQQSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TAIR10
Match: AT1G02130.1 (AT1G02130.1 RAS 5)

HSP 1 Score: 343.6 bits (880), Expect = 8.4e-95
Identity = 172/197 (87.31%), Postives = 185/197 (93.91%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYDVTD+ESF NVKQWL+EIDRYAS+NVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPA-NNARPP 188
             N+ + YE+AKAFADE+GIPFMETSAKDATNVEQAFMAM+A IK RMAS PA NNARPP
Sbjct: 126 TENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPP 185

Query: 189 TVQLQGQPVNQKGGCCS 204
           TVQ++GQPV QK GCCS
Sbjct: 186 TVQIRGQPVAQKNGCCS 202

[Close]

BLAST of CmoCh04G003860 vs. TAIR10
Match: AT5G47200.1 (AT5G47200.1 RAB GTPase homolog 1A)

HSP 1 Score: 342.0 bits (876), Expect = 2.4e-94
Identity = 172/196 (87.76%), Postives = 183/196 (93.37%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+ YDVTD ESF NVKQWLNEIDRYASENVNKLLVGNK DL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKNDL 125

Query: 129 PN-KVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
            + KVVS E+AKAFADE+GIPF+ETSAK+ATNVE+AFMAMTA IK RMAS PA  A+PPT
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGGAKPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQ+ GCCS
Sbjct: 186 VQIRGQPVNQQSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. TAIR10
Match: AT3G11730.1 (AT3G11730.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 290.8 bits (743), Expect = 6.5e-79
Identity = 147/198 (74.24%), Postives = 170/198 (85.86%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDS VGKSCLLLRFADD+Y+DSYISTIGVDFKIRT+EQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYD T+ ESF NVKQWL+EIDRYA+E+V KLL+GNK D+
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDM 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANN--ARP 188
             +KVVS E+ +A ADE+GIPF+ETSAKD+ NVEQAF+ +  +IK +M S    N  + P
Sbjct: 126 VESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGP 185

Query: 189 PTVQLQGQPVNQ-KGGCC 203
            TVQ++GQP+ Q  GGCC
Sbjct: 186 GTVQMKGQPIQQNNGGCC 203

[Close]

BLAST of CmoCh04G003860 vs. TAIR10
Match: AT5G59840.1 (AT5G59840.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-61
Identity = 118/204 (57.84%), Postives = 148/204 (72.55%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYL KLLLIGDSGVGKSCLLLRF+D S+  S+I+TIG+DFKIRT+E DGK IKLQIWDTA
Sbjct: 13  DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTIT++YYRGA GI++VYDVTD+ SF N++ W+  I+++AS+NVNK+LVGNK D+
Sbjct: 73  GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132

Query: 129 --PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPP 188
               + V     +A ADE GI F ETSAK   NVE+ F ++  DIK R+A    + A P 
Sbjct: 133 DESKRAVPKSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLADTD-SRAEPA 192

Query: 189 TVQLQ--------GQPVNQKGGCC 203
           T+++         GQ   QK  CC
Sbjct: 193 TIKISQTDQAAGAGQ-ATQKSACC 214

[Close]

BLAST of CmoCh04G003860 vs. NCBI nr
Match: gi|449458327|ref|XP_004146899.1| (PREDICTED: ras-related protein RABD2a [Cucumis sativus])

HSP 1 Score: 387.5 bits (994), Expect = 1.4e-104
Identity = 192/195 (98.46%), Postives = 193/195 (98.97%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPTV 188
           PN+ VSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMAS PANNARPPTV
Sbjct: 126 PNRAVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASQPANNARPPTV 185

Query: 189 QLQGQPVNQKGGCCS 204
           QLQGQPVNQKGGCCS
Sbjct: 186 QLQGQPVNQKGGCCS 200

[Close]

BLAST of CmoCh04G003860 vs. NCBI nr
Match: gi|703131224|ref|XP_010104830.1| (Ras-related protein RABD2c [Morus notabilis])

HSP 1 Score: 368.6 bits (945), Expect = 6.9e-99
Identity = 183/196 (93.37%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAKDATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAAEIKNRMASQPMNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. NCBI nr
Match: gi|593785327|ref|XP_007155704.1| (hypothetical protein PHAVU_003G224200g [Phaseolus vulgaris])

HSP 1 Score: 368.2 bits (944), Expect = 9.0e-99
Identity = 182/196 (92.86%), Postives = 190/196 (96.94%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQ+SF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQDSFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQKGGCCS
Sbjct: 186 VQIRGQPVNQKGGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. NCBI nr
Match: gi|1370166|emb|CAA98160.1| (RAB1C [Lotus japonicus])

HSP 1 Score: 367.1 bits (941), Expect = 2.0e-98
Identity = 182/196 (92.86%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TENKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

[Close]

BLAST of CmoCh04G003860 vs. NCBI nr
Match: gi|388520849|gb|AFK48486.1| (unknown [Lotus japonicus])

HSP 1 Score: 367.1 bits (941), Expect = 2.0e-98
Identity = 182/196 (92.86%), Postives = 189/196 (96.43%), Query Frame = 1


Query: 9   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 68
           DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA
Sbjct: 6   DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65

Query: 69  GQERFRTITSSYYRGAHGIIIVYDVTDQESFENVKQWLNEIDRYASENVNKLLVGNKCDL 128
           GQERFRTITSSYYRGAHGII+VYDVTDQESF NVKQWLNEIDRYASENVNKLLVGNKCDL
Sbjct: 66  GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125

Query: 129 -PNKVVSYESAKAFADEVGIPFMETSAKDATNVEQAFMAMTADIKNRMASLPANNARPPT 188
             NKVVSYE+AKAFADE+GIPFMETSAK+ATNVEQAFMAM A+IKNRMAS P NNARPPT
Sbjct: 126 TANKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNARPPT 185

Query: 189 VQLQGQPVNQKGGCCS 204
           VQ++GQPVNQK GCCS
Sbjct: 186 VQIRGQPVNQKSGCCS 201

The following BLAST results are available for this feature:

BLAST of CmoCh04G003860 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RAD2C_ARATH	3.9e-94	87.76	Ras-related protein RABD2c OS=Arabidopsis thaliana GN=RABD2C PE=2 SV=1	[more]
RAD2A_ARATH	1.5e-93	87.31	Ras-related protein RABD2a OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3	[more]
RAD2B_ARATH	4.3e-93	87.76	Ras-related protein RABD2b OS=Arabidopsis thaliana GN=RABD2B PE=2 SV=1	[more]
YPTM2_MAIZE	9.7e-93	88.83	GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1	[more]
RIC1_ORYSJ	1.6e-92	86.29	Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2	[more]

BLAST of CmoCh04G003860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUE5_CUCSA	1.0e-104	98.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G025060 PE=4 SV=1	[more]
W9RPK9_9ROSA	4.8e-99	93.37	Ras-related protein RABD2c OS=Morus notabilis GN=L484_024030 PE=4 SV=1	[more]
V7CEC3_PHAVU	6.3e-99	92.86	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G224200g PE=4 SV=1	[more]
Q40203_LOTJA	1.4e-98	92.86	RAB1C OS=Lotus japonicus GN=rab1C PE=2 SV=1	[more]
I3T7J4_LOTJA	1.4e-98	92.86	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of CmoCh04G003860 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G17530.1	2.2e-95	87.76	RAB GTPase homolog 1C	[more]
AT1G02130.1	8.4e-95	87.31	RAS 5	[more]
AT5G47200.1	2.4e-94	87.76	RAB GTPase homolog 1A	[more]
AT3G11730.1	6.5e-79	74.24	Ras-related small GTP-binding family protein	[more]
AT5G59840.1	2.7e-61	57.84	Ras-related small GTP-binding family protein	[more]

BLAST of CmoCh04G003860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458327\|ref\|XP_004146899.1\|	1.4e-104	98.46	PREDICTED: ras-related protein RABD2a [Cucumis sativus]	[more]
gi\|703131224\|ref\|XP_010104830.1\|	6.9e-99	93.37	Ras-related protein RABD2c [Morus notabilis]	[more]
gi\|593785327\|ref\|XP_007155704.1\|	9.0e-99	92.86	hypothetical protein PHAVU_003G224200g [Phaseolus vulgaris]	[more]
gi\|1370166\|emb\|CAA98160.1\|	2.0e-98	92.86	RAB1C [Lotus japonicus]	[more]
gi\|388520849\|gb\|AFK48486.1\|	2.0e-98	92.86	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007264	small GTPase mediated signal transduction

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016020	membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G003860.1	CmoCh04G003860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001806	Small GTPase superfamily	PFAM	PF00071	Ras	coord: 13..172 score: 1.1
IPR005225	Small GTP-binding protein domain	TIGRFAMs	TIGR00231	TIGR00231	coord: 10..166 score: 3.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 9..202 score: 5.0
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 8..181 score: 2.32
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 149..171 score: 1.9E-46coord: 115..128 score: 1.9E-46coord: 53..75 score: 1.9E-46coord: 12..33 score: 1.9E-46coord: 35..51 score: 1.9
None	No IPR available	PANTHER	PTHR24073	FAMILY NOT NAMED	coord: 3..203 score: 3.7E
None	No IPR available	PANTHER	PTHR24073:SF520	RAS-RELATED PROTEIN RABD2B-RELATED	coord: 3..203 score: 3.7E
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 9..174 score: 4.6
None	No IPR available	SMART	SM00174	rho_sub_3	coord: 14..173 score: 6.3
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 12..174 score: 2.4E
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 17..201 score: 8.
None	No IPR available	SMART	SM00177	arf_sub_2	coord: 1..187 score: 5.
None	No IPR available	PROFILE	PS51419	RAB	coord: 7..203 score: 38

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G003860	Cucsa.094030	Cucumber (Gy14) v1	cgycmoB0197
CmoCh04G003860	Cla010704	Watermelon (97103) v1	cmowmB687
CmoCh04G003860	Csa4G025060	Cucumber (Chinese Long) v2	cmocuB700
CmoCh04G003860	MELO3C017637	Melon (DHL92) v3.5.1	cmomeB694
CmoCh04G003860	ClCG07G017070	Watermelon (Charleston Gray)	cmowcgB671
CmoCh04G003860	CSPI04G04200	Wild cucumber (PI 183967)	cmocpiB708
CmoCh04G003860	Lsi07G001260	Bottle gourd (USVL1VR-Ls)	cmolsiB690
CmoCh04G003860	MELO3C017637.2	Melon (DHL92) v3.6.1	cmomedB788
CmoCh04G003860	CsaV3_4G004290	Cucumber (Chinese Long) v3	cmocucB0828
CmoCh04G003860	Cla97C07G144110	Watermelon (97103) v2	cmowmbB749
CmoCh04G003860	Bhi01G001998	Wax gourd	cmowgoB0851
CmoCh04G003860	CsGy4G004130	Cucumber (Gy14) v2	cgybcmoB516
CmoCh04G003860	Carg08041	Silver-seed gourd	carcmoB0514

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G003860	Watermelon (97103) v2	cmowmbB678
CmoCh04G003860	Wax gourd	cmowgoB0810
CmoCh04G003860	Cucurbita moschata (Rifu)	cmocmoB286
CmoCh04G003860	Cucurbita moschata (Rifu)	cmocmoB435
CmoCh04G003860	Cucurbita maxima (Rimu)	cmacmoB338
CmoCh04G003860	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G003860	Watermelon (Charleston Gray)	cmowcgB639
CmoCh04G003860	Cucurbita pepo (Zucchini)	cmocpeB668
CmoCh04G003860	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G003860	Cucurbita pepo (Zucchini)	cmocpeB707
CmoCh04G003860	Bottle gourd (USVL1VR-Ls)	cmolsiB614
CmoCh04G003860	Silver-seed gourd	carcmoB0972
CmoCh04G003860	Silver-seed gourd	carcmoB1177
CmoCh04G003860	Cucumber (Chinese Long) v3	cmocucB0871