CmoCh04G001000 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G001000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Methionine-tRNA ligase, putative
Location	Cmo_Chr04 : 528786 .. 535061 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTGAAAATTGAAAAACCCTATCAGTGATTGATCGACTGTCCGAGTAGAAAGAATTCTCAGCAGTTCATCACTGAAAAGCTTGAAATGGCTGCCAATGGAGGTTCTGCGTTAGATAGGAAGCAGTTGGTCGCATCGGTGCTGGCCAAACACTTCTCCTTAGATTTTGTAAGCTTCTTCTCTCTTAACCTGCTGTCGAACGCCGTGAATCTCTGATCTTATACGGACCAATCTTCTCTCTTGTTTCACTCGACATTTATTGGTATTGGCTGCTCCATATTGTGAAATTGATTTGACTTTACGTGTACGAGGAATAATTCTATGCACTGTATTATTTTATGGATATGATCATGGTTTGTCTAGTTTCTCTTAGGAGTTAGATGAAGTCGTGGAATCATCTCCAGACATGAATTTTAGCAGTAAAATATGTTAATGTAGTTTCCGTTGATTGCCTCATTTGTTTTTTGAAATGATTCATCCGTCCAACGATTACGAGCTTCGGTACCACTTGTTTACAATCTTTCTTTTCCGTGTTGTGCATTGTCATTGGAATTTTGTTACTGAAGTTAAATTGCTATTTGTTTCAGAGTTCATTAACCGGAGAAAGTATGGATTTTAAGACCTATGTAGTAAACCTCTTGAAAACATCAAGAAATGGTGCTTCTATCGATGATAATGATGAGGTAAGGTTGAATATTTTTCACTCTTTCATTATTCCGAAGTTCCATTCATTGATTTTCCTTTGTTGCATTTGACCTTGACGACTATGCTGACTGTACTCGAATTTCATATTGTTAGAAGTTTTTTATAGGAGCACGAATTTTCATGGAAGTGAAAAGAGTACAAAAGATAAGAAAAGAATCCACCCCAATTTCACAAAGGAGATTTTCGCAAAGCTCTCCAATTGGTCAAAATAGAAGAAACAGATCAGTTTCTAGAATCCTTTGAGAGAAGACATCAATTATAACAGTTGAAAACAATAGTGCCTCAAGAGTCCTCCCAAGTTCTTTATGAACCTTGAAGCTATGCTCTTTTCTCAATCCAAACTTTACAAAGATTAGGAAAAGTACAGTTTAACTGAAGAGTGTTAGCTTTTATTTTATTGGGGTCAGGGATGCCTGACGACAAGAGGGAAATAGAAAATCTCAAATATCGGTAGACCAACCAAAGTTCAAATTGAAGGTATTAAGGATTTTCTCCCAAACGTGCTTAACCAATGGACCAACCAATAAAAATTAATATGTATCTTCACAAGCAGACTTGCACCAGACACTAAGCGGGGAACAAGAAAATATGTGGGAATTTGTGTTCTGCACTCTCTATCAAATGTAGATTCACTGCTAGAAAAGGGACCAAACGAAAGCTTTAACCTTCCACATGCACTTAGTAGCGTCCATAGGGAAGATCTTTCTTCCCAAGGAACCTTGCCAATACATGTATTATGAAGGCCAGATATGCAGCCGTTTGAAATTTTTATGTTTTAGATTTCCCGAACGGACATCTGATAAAATTGAAAATTTATGTTTTAGTGTAACTTTTTGTTTTATCATTACCATAACGGTTATGATGGTTGCTGCAGGTGATGAAATGGATTACATTTGCAGACAGCTTTCCTGTAGATTCTAAGGCATGCCTTGAGGTTCTCAAACAATTAAATGAAGAATTGGTTCAAAAGTCTGTACTTTTGGGTAATGGATTGAAGACATCTGAAGCTGATGTAATTGTGTTTTCAGTACTACACCCTTCTGTGGTAAGCATTCTTGCATTTTATGACAAAATGTCTATATTTAAGATCATTCTTTTCTTTCAAGAATGTCATCATTTCTTCATATTATGTATACACATTTCATTTCACGTTTTCATGCTTAGATCCTTGTTCAAATGGCCGATGGATCTTTTGCATACGGTTCTTGGATTTCGAGGACTAGTTTTACATAGGATTTCAAAAAATTACTTTTAGATTGACCAAAGTAGAGATTCCAGTGAGATCTGACCTTATTGATTACTGCTAGATTGGCCTTTCAACAGCAGAGAGAGAAAAGTTGCCACACATTTTAAGATGGATAGATTATATCCAGGTGGGTCTACTTCTTTAATGCCTTGACTGCTTACCAATTGCATGCTGAGAATATTTCTGGTTTTGATTGTTGATTTTATCGCAGACATGCAAAAATGAGTATTAATATTGGTTTTTTAGTCGTTTATTTATACTTTGAATCCACTTTTATTCTGGCTTCAATATTATTGTGGTTTAGTTCCATGACTTGAGCTAATTAATACTTGCATCATTTTGTGTTTTTAACAGAACAAAGAGAATATTGGGGAGTTGTTTCAAAAGATACAGCTAGAGAAATGCAACTTTGATCCTCCAGTAAGTGCGCAATTAATTCTTTTGCATCTGCTAGAGTTTTGCTCCAAAGTGAAAAGTATATTGTTTGCACTATCATACCATTTATCATTAGAAACATCTAAGTTATGCCAAAAAATTATGTTTGGTTCACATAATATGGACTATAAATTTCCAGATCAAGTCAGCTAGTATTCTTCCCTTGTGTGACCTAGCTACAATTTGACTTTGAAATTTGAATATTCGTTATTCATTGTTTTTCTCTATTCTAGTTGATTATCCTTGGGTTCTGTACTGTGTTGTCATTGTTCTTTGATTTTACCTGTTTGATGTTGTTAACTTCAAACTGCCAGTTGCTTTCACATTGTTTTCACTTCACTCTCAAATTGCAAGTTCTTGTTGGTTTCTAGTATTTGTGAATTTCTTTGTGCTTTTGCCCTGTTTTTGTGGGTTCCTCCATTTCTGGCTTAGCTGAAGCAGCAAAGCTTTTTAAGGAGATGGATATTTCATAAAATATATTTTTTTCTCTAAAAAAACTAAAAGCTAGATTGATTTTTTCAAGTTTCATACAAATTCATGGAGTTTGTTCCCAAGAAGTATGCATTTGAATTACTGATGGTTAATAACTCGCATTTTGAGAAATTCCGTTGCATGAACAAATTAAAAGTCTTATTAATTATAGTTGCAGGGAAAAGTTGTTGCCAACAATGTGGAGGAAGATTCAAACGCCAAGAAGTCTTCGCAAAGCACCAAGGTTTCAGATAAGCCTCAACTGAACCCAGACACTAAGAAAACTGATCCGGGGGTAAAGCCTACATTTCTTTATTGGCCTGCCTACTCATATTTTGGTAATATAAACTATTGAAAAATGTTGCAAAGACCTTTATTGAAGGGAAACTGTATTCTGTTCTATTTTTCATATCTTTTGAATAGTTTGGAGAGAATTCTCTCATCTTGTGAGAGAACATTACTTGTGCACTGTTTCAAATTTTGGGGAGAATTGGTGCTTTGATGGAATAGTGAAGGAAAATATTTTACAGTTGTTGCATAGCCCAGCCATGGTTTTAAGAAAAAGAAATCCTTTCTTTGTGAACTTTGGTTAGAGAGGAATCAGTGAATCTTTAACAATAAAAGCAGGAGCAGGGTTTTATTCTAATCGGTGTACACTTTCAAATTCTTTTGATAATTATACCTCCTTTATAATCAATTTTAATTGGATCAGATTATTGTGACGCCATATGGGGTATTTTGATATAGATCTTTTGGTTTCTTTTATTTTAACTTTTAATAGATTCAGTGAAAAGTTTGTTTAGAAAAAAGAAGTGAGGTAGAAGAATGTTTTCTTTTGAACCAATATATTACTTGCACATAGTTGATGGTTCTATTTTAGTATTCAATGTATATTGACTTGTTGTGACCTGTTCAATTTCTGTGGTATAACTTGATATCCTCTAACTATTCTTTACTCCTGCCTTTTCTCATCATCATCTTTTTTGCAATTCATTCATTTACATATTTGTTTTTAATTTTATGGAACTGTTAGAAAAAAGAGAAGGACAAAAAAGAAGCTGCACCTGAAAAGAAGAAACCACTTGAAACAGAAACAACGGATAAAGAAAAGGAAGTTAGCGTTAGTTTGTTGAATATACGTGTTGGGCTTATTCGAAAAGCGTGGAAACATCCATCTGCTGACAGGTATGGTCAGCAATCTTCCTTCCATGTACTGCTTTCTGCGATAGCATTATTTGCGTTGATCTATTGAAGTTCATTATTCTCCTCTGAGCTTAAATTTGTATAAATCATACTGTGGTGATGATGGTTAATGATCCAGTTTGCTGGTTGAGGAGATAGATGTTGGAGAGGCCAATGTGCGACAGGTTGTCAGTGGTCTGGCAAAGTTCTGTAGTCCAGAGGAATTGACGGTATAGTTACATTTACATGTTGGTCATGAGGAACTTGTAATGGATCCGCTGTACAAACAGAATTCAAAGTTTGATGTATTATTGTATTAATCTGTGCAGAACCGCCACGTTGTTCTTATCACTAATGTAAAACCCGGAAAGCTACGAGATGTGATGTCCCAGGGATTGGTATTTTCTCTTTCCTTGGCAGTCTGTTTTTTTTTTTTTTTGGACATACCATAATTGATTATTTTTATCTTTTTTAGGCTCCTGTACTTTACTGTGACGTATATGGATTAATATGAAGTTGCCTTTCATTTTATATGTGAATACACCAAATTCTTAGCACTATTTCTCTAGTTCTGGTCTCGTTTCAGTTATTTCTTCTTACATTTTTAATGTGGACTTTGGATGTTCCATATGTTGTGTGGAAGTTGTGTTGATATGCTCACTTGTACATGGATTCATAAATCCCTCTCTCAGGTGTTGTGTGCGTCTAATGAAGATCACACCATCGTGGAGCCTTTGCTTCCTCCTGAAGGAGCCAAAATTGGTGAACAAATTTCATTTGCGGGGTAAGTTTTTCAGAGACAACTCAATTTAACTGCATTACCTGACTTGCACTTCTATGAACTTTTGTGTAGAGTAGCTGTGTATATATATATTATACACTAGAAGATGTTTCAAGAATCTTTTTCTTATTCAAAAGGGGGAAATTAGGTCTTGTCCTTGGTAAATGTAAATTCTCCCTTCGGCGTATCATTGAGTATCTGATTGTTTTTCTTGGTTGTTTTATAATTAATCTCTATTTGAATTGGGTCTCTGCTGTTATGTGGTGTATTGATTATCTCGTAATTTGATTTAGGGTTGATGGGAAGCCAGAAGATGTTCTCAACCCCAAAAAGAAACAACTGGATAAGATAACACCGGTACGTCCACTTTTAACCTTCCCTGTCCAAATAGGTTCAAAATAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAACCGTTTTAAATGACAAGGTCATAAAGTGGATGTGTTTTGAACAAAATAGGCAAGGTTGAACACTTACATTTATTCTCTGGCTAAAGGGTCGTGGATTGTTGTGCCTTCTTAAATTGCATGCATTTAAACGTAAGAAGGGCGATTCAAAGGTCTTGCGTTGGGCAAACGAAATGAAAGCAGCAGCCAGTGTATTTGGAATAACTTTTGAAAAAAATGATTTTTAAATACTTTCTTTTTAAAAGAAAATAATAATCAATTTAACTTATGGAAGGATTTTAGATGACCAAAAGTGTTCTTTAATAAATGATAAGCACTTTAAAAATTGAATTAGTTTTTAACCTATCTTTGAAAAAACATTCGAGAGATGAATTATATATATATATAAGTCCTGGAAGTGATTAATAAACAAAACTTCAAAATATGCAGAAAACTAAATATCACATGTAGTTAATATAATCACTTTTAAATGTTGTGGATCCACTAAACGCACCTTTTATCCTGCTCTCCCGGCTGCAATCTATGCCTACTCACATCTTTCATTTTGCACCTATTATACTCAAATGGTTGTTATTTGGATGGATTCAGCATCTTTTCACAGACGACAAGGGCGTGGCGATGTACAAAGGAATACCGTTCATGACATCTGCAGGAGCATGCACGTCGTCGATCCCGAAGGCAAGCATCAAATAATTGCATCATAGCCATGGTAGAGGAGAGCTTCACAGCCAGAAGGATCCCTGAACACTGCGCTACTTGGCGAACCAAACAGAGTCACTTTTGAAGAGATTTTGCACTGGTTCATCAAATCAAATGGGCCTTCATAATTTCAGGTAATGTATCGTTGTAGTTCTTTTGGTCTTAAAAATGACATTTTCTGATTTGAATTTATGATATTTAGAATTGACATTATGTTCGTATGATGTCAAAGGGTCACATTTTTGTTTTAGATGAATCTCAATCTCCCAACAACCATATTTTGTTTATCTAACTTCGAATTACACATAAATATAATTTCGATTTCAG

mRNA sequence

TCTGAAAATTGAAAAACCCTATCAGTGATTGATCGACTGTCCGAGTAGAAAGAATTCTCAGCAGTTCATCACTGAAAAGCTTGAAATGGCTGCCAATGGAGGTTCTGCGTTAGATAGGAAGCAGTTGGTCGCATCGGTGCTGGCCAAACACTTCTCCTTAGATTTTAGTTCATTAACCGGAGAAAGTATGGATTTTAAGACCTATGTAGTAAACCTCTTGAAAACATCAAGAAATGGTGCTTCTATCGATGATAATGATGAGGTGATGAAATGGATTACATTTGCAGACAGCTTTCCTGTAGATTCTAAGGCATGCCTTGAGGTTCTCAAACAATTAAATGAAGAATTGGTTCAAAAGTCTGTACTTTTGGGTAATGGATTGAAGACATCTGAAGCTGATGTAATTGTGTTTTCAGTACTACACCCTTCTGTGAACAAAGAGAATATTGGGGAGTTGTTTCAAAAGATACAGCTAGAGAAATGCAACTTTGATCCTCCAGGAAAAGTTGTTGCCAACAATGTGGAGGAAGATTCAAACGCCAAGAAGTCTTCGCAAAGCACCAAGGTTTCAGATAAGCCTCAACTGAACCCAGACACTAAGAAAACTGATCCGGGGAAAAAAGAGAAGGACAAAAAAGAAGCTGCACCTGAAAAGAAGAAACCACTTGAAACAGAAACAACGGATAAAGAAAAGGAAGTTAGCGTTAGTTTGTTGAATATACGTGTTGGGCTTATTCGAAAAGCGTGGAAACATCCATCTGCTGACAGTTTGCTGGTTGAGGAGATAGATGTTGGAGAGGCCAATGTGCGACAGGTTGTCAGTGGTCTGGCAAAGTTCTGTAGTCCAGAGGAATTGACGAACCGCCACGTTGTTCTTATCACTAATGTAAAACCCGGAAAGCTACGAGATGTGATGTCCCAGGGATTGGTGTTGTGTGCGTCTAATGAAGATCACACCATCGTGGAGCCTTTGCTTCCTCCTGAAGGAGCCAAAATTGGTGAACAAATTTCATTTGCGGGGGTTGATGGGAAGCCAGAAGATGTTCTCAACCCCAAAAAGAAACAACTGGATAAGATAACACCGCATCTTTTCACAGACGACAAGGGCGTGGCGATGTACAAAGGAATACCGTTCATGACATCTGCAGGAGCATGCACGTCGTCGATCCCGAAGGCAAGCATCAAATAATTGCATCATAGCCATGGTAGAGGAGAGCTTCACAGCCAGAAGGATCCCTGAACACTGCGCTACTTGGCGAACCAAACAGAGTCACTTTTGAAGAGATTTTGCACTGGTTCATCAAATCAAATGGGCCTTCATAATTTCAGGTAATGTATCGTTGTAGTTCTTTTGGTCTTAAAAATGACATTTTCTGATTTGAATTTATGATATTTAGAATTGACATTATGTTCGTATGATGTCAAAGGGTCACATTTTTGTTTTAGATGAATCTCAATCTCCCAACAACCATATTTTGTTTATCTAACTTCGAATTACACATAAATATAATTTCGATTTCAG

Coding sequence (CDS)

ATGGCTGCCAATGGAGGTTCTGCGTTAGATAGGAAGCAGTTGGTCGCATCGGTGCTGGCCAAACACTTCTCCTTAGATTTTAGTTCATTAACCGGAGAAAGTATGGATTTTAAGACCTATGTAGTAAACCTCTTGAAAACATCAAGAAATGGTGCTTCTATCGATGATAATGATGAGGTGATGAAATGGATTACATTTGCAGACAGCTTTCCTGTAGATTCTAAGGCATGCCTTGAGGTTCTCAAACAATTAAATGAAGAATTGGTTCAAAAGTCTGTACTTTTGGGTAATGGATTGAAGACATCTGAAGCTGATGTAATTGTGTTTTCAGTACTACACCCTTCTGTGAACAAAGAGAATATTGGGGAGTTGTTTCAAAAGATACAGCTAGAGAAATGCAACTTTGATCCTCCAGGAAAAGTTGTTGCCAACAATGTGGAGGAAGATTCAAACGCCAAGAAGTCTTCGCAAAGCACCAAGGTTTCAGATAAGCCTCAACTGAACCCAGACACTAAGAAAACTGATCCGGGGAAAAAAGAGAAGGACAAAAAAGAAGCTGCACCTGAAAAGAAGAAACCACTTGAAACAGAAACAACGGATAAAGAAAAGGAAGTTAGCGTTAGTTTGTTGAATATACGTGTTGGGCTTATTCGAAAAGCGTGGAAACATCCATCTGCTGACAGTTTGCTGGTTGAGGAGATAGATGTTGGAGAGGCCAATGTGCGACAGGTTGTCAGTGGTCTGGCAAAGTTCTGTAGTCCAGAGGAATTGACGAACCGCCACGTTGTTCTTATCACTAATGTAAAACCCGGAAAGCTACGAGATGTGATGTCCCAGGGATTGGTGTTGTGTGCGTCTAATGAAGATCACACCATCGTGGAGCCTTTGCTTCCTCCTGAAGGAGCCAAAATTGGTGAACAAATTTCATTTGCGGGGGTTGATGGGAAGCCAGAAGATGTTCTCAACCCCAAAAAGAAACAACTGGATAAGATAACACCGCATCTTTTCACAGACGACAAGGGCGTGGCGATGTACAAAGGAATACCGTTCATGACATCTGCAGGAGCATGCACGTCGTCGATCCCGAAGGCAAGCATCAAATAA

Homology

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BLAST of CmoCh04G001000 vs. Swiss-Prot
Match: SYM_ORYSJ (Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700 PE=2 SV=2)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-42
Identity = 106/229 (46.29%), Postives = 145/229 (63.32%), Query Frame = 1


Query: 140 KVVANNVEEDSNAKKSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETT 199
           K   +  E  S A+  +++ KV+DK +    TK +D G+K++ KK++   K K       
Sbjct: 583 KFAGSQAERSSKAQADAEAKKVADKLK---GTKLSDGGQKKEQKKQSGGSKSK------- 642

Query: 200 DKEKEVSVSLLNIRVGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTN 259
           + E +V+V+ L+IRVGLIRKA KHP ADSL VEEIDVGE   R VVSGL KF   EE+ N
Sbjct: 643 NAEVDVTVAKLDIRVGLIRKAQKHPDADSLYVEEIDVGEEAPRTVVSGLVKFIPLEEMQN 702

Query: 260 RHVVLITNVKPGKLRDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPED 319
           R V ++ N+KP  +R + S  +VL ASNEDHT VE + PPE A +GE+++FAG  G+PE 
Sbjct: 703 RKVCVLCNLKPVAMRGIKSHAMVLAASNEDHTKVELVEPPESAAVGERVTFAGYSGEPEA 762

Query: 320 VLNPKKKQLDKITPHLFTDDKGVAMYKGIPFMTSAGAC-TSSIPKASIK 368
            LN K K  +K++  L ++ + VA YK +PF TSAG C   SI    I+
Sbjct: 763 SLNAKSKTWEKLSADLHSNGELVACYKDVPFTTSAGVCKVKSIASGEIR 801

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BLAST of CmoCh04G001000 vs. Swiss-Prot
Match: SYMC_ARATH (Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 9.4e-38
Identity = 96/219 (43.84%), Postives = 140/219 (63.93%), Query Frame = 1


Query: 150 SNAKKSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSL 209
           S+ +   ++  ++D  QLN  TK +D  K++   K     K +P        ++E++++ 
Sbjct: 588 SDRRARDEAANLAD--QLNK-TKLSDAKKQKASSKGGGKPKPQPAA------DREITMAR 647

Query: 210 LNIRVGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVK 269
           L+IRVG I KA KHP AD+L VEEIDVG   +R VVSGL K+   EE+ NR V ++ N+K
Sbjct: 648 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 707

Query: 270 PGKLRDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLD 329
           P K+RD++SQ +VL AS+ D + VE + PP+ A IGE+++F G +G+P+DVLNPKKK  +
Sbjct: 708 PAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWE 767

Query: 330 KITPHLFTDDKGVAMYKGIPFMTSAGAC-TSSIPKASIK 368
            +   L T +  VA YK +PF TSAG C  SSI   +I+
Sbjct: 768 TLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797

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BLAST of CmoCh04G001000 vs. Swiss-Prot
Match: AIMP1_HUMAN (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens GN=AIMP1 PE=1 SV=2)

HSP 1 Score: 144.1 bits (362), Expect = 3.1e-33
Identity = 114/311 (36.66%), Postives = 167/311 (53.70%), Query Frame = 1


Query: 56  DNDEVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPS 115
           +ND V+K +   +    ++   +E LKQ    L +K++L     +  +  V        +
Sbjct: 3   NNDAVLKRL---EQKGAEADQIIEYLKQQVSLLKEKAILQATLREEKKLRV------ENA 62

Query: 116 VNKENIGELFQK-IQLEKCNFD-----PPGKVVANNVEEDSNAKKSSQSTKVSD--KPQL 175
             K+ I EL Q+ IQ E  N       P G  +  N     N  +S+  T VS   K Q+
Sbjct: 63  KLKKEIEELKQELIQAEIQNGVKQIPFPSGTPLHANSMVSENVIQSTAVTTVSSGTKEQI 122

Query: 176 NPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGLIRKAWKHPSAD 235
              T      K++ +KK    EKK+     + D  K + VS L++R+G I  A KHP AD
Sbjct: 123 KGGTGDEKKAKEKIEKKGEKKEKKQQSIAGSADS-KPIDVSRLDLRIGCIITARKHPDAD 182

Query: 236 SLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVLCASN 295
           SL VEE+DVGE   R VVSGL      E++ NR V+L+ N+KP K+R V+SQ +V+CAS+
Sbjct: 183 SLYVEEVDVGEIAPRTVVSGLVNHVPLEQMQNRMVILLCNLKPAKMRGVLSQAMVMCASS 242

Query: 296 EDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDDKGVAMYKG 355
            +   +E L PP G+  G++I+F    G+P+  LNPKKK  ++I P L T+D+ VA YKG
Sbjct: 243 PEK--IEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNDECVATYKG 301

Query: 356 IPF-MTSAGAC 358
           +PF +   G C
Sbjct: 303 VPFEVKGKGVC 301

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BLAST of CmoCh04G001000 vs. Swiss-Prot
Match: AIMP1_MOUSE (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus GN=Aimp1 PE=1 SV=2)

HSP 1 Score: 137.5 bits (345), Expect = 2.9e-31
Identity = 112/309 (36.25%), Postives = 164/309 (53.07%), Query Frame = 1


Query: 57  NDEVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV 116
           ND V+K +   +    ++   +E LKQ    L +K++L     +  +  V        + 
Sbjct: 4   NDAVLKRL---EQKGAEADQIIEYLKQQVALLKEKAILQATMREEKKLRV------ENAK 63

Query: 117 NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSS---QSTKVSDKPQLNPDTK- 176
            K+ I EL Q++ L + +       V  +    +N   S    QS  V+     +P TK 
Sbjct: 64  LKKEIEELKQELILAEIHNGVEQVRVRLSTPLQTNCTASESVVQSPSVATTA--SPATKE 123

Query: 177 --KTDPGKKEKDKKEAAPEKKKPLETETTDKE-KEVSVSLLNIRVGLIRKAWKHPSADSL 236
             K    KK K+K E   EKK+  ++     + K +  S L++R+G I  A KHP ADSL
Sbjct: 124 QIKAGEEKKVKEKTEKKGEKKEKQQSAAASTDSKPIDASRLDLRIGCIVTAKKHPDADSL 183

Query: 237 LVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVLCASNED 296
            VEE+DVGEA  R VVSGL      E++ NR VVL+ N+KP K+R V+SQ +V+CAS+ +
Sbjct: 184 YVEEVDVGEAAPRTVVSGLVNHVPLEQMQNRMVVLLCNLKPAKMRGVLSQAMVMCASSPE 243

Query: 297 HTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDDKGVAMYKGIP 356
              VE L PP G+  G++I+F    G+P+  LNPKKK  ++I P L T+ + VA YKG P
Sbjct: 244 K--VEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVATYKGAP 299

Query: 357 F-MTSAGAC 358
           F +   G C
Sbjct: 304 FEVKGKGVC 299

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BLAST of CmoCh04G001000 vs. Swiss-Prot
Match: AIMP1_CRIGR (Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus GN=AIMP1 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 6.5e-31
Identity = 113/315 (35.87%), Postives = 171/315 (54.29%), Query Frame = 1


Query: 52  ASIDDNDEVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSV 111
           A +  ND V+K +   +    ++   +E LKQ    L +K+VL     +  +  V     
Sbjct: 45  AKMATNDAVLKRL---EQKGAEADQIIEYLKQQVALLKEKAVLQATLREEKKLRV----- 104

Query: 112 LHPSVNKENIGELFQKI---QLEKCNFDPPGKVVANNVEEDSNAKKSS--QSTKVSD-KP 171
              +  K+ I EL Q++   +++      P  V ++   + S+A  +S  QST VS    
Sbjct: 105 -ENAKLKKEIEELKQELIQAEIQNGVKQIPVPVQSDTPVQASSAVSTSVIQSTSVSTISC 164

Query: 172 QLNPDTKKTDPGKKEKDKKEAAPEKK-KPLETETTDKE-KEVSVSLLNIRVGLIRKAWKH 231
            +   +K     KK K+K +   EKK K L++     + K V VS L++R+G I    KH
Sbjct: 165 SIKEHSKGGGEEKKVKEKTDKKGEKKEKKLQSAAPSADSKPVDVSRLDLRIGRIVTVKKH 224

Query: 232 PSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVL 291
           P ADSL VEE+DVGEA  R V+SGL      +++ NR VVL+ N+KP K+R ++SQ +V+
Sbjct: 225 PDADSLYVEEVDVGEAAPRTVISGLVNHVPLDQMQNRMVVLLCNLKPAKMRGILSQAMVM 284

Query: 292 CASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDDKGVA 351
           CAS+ +   VE L PP G+  G++I+F    G+P+  LNPKKK  ++I P L T+ + VA
Sbjct: 285 CASSPEK--VEILAPPNGSVPGDRITFDAFPGEPDKELNPKKKIWEQIQPDLHTNAECVA 344

Query: 352 MYKGIPF-MTSAGAC 358
            YKG PF +   G C
Sbjct: 345 TYKGSPFEVKGKGVC 348

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BLAST of CmoCh04G001000 vs. TrEMBL
Match: A0A0A0KQP5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223010 PE=4 SV=1)

HSP 1 Score: 590.1 bits (1520), Expect = 1.8e-165
Identity = 314/394 (79.70%), Postives = 336/394 (85.28%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGESM--DFKTYVVNLLKTSRNGASIDDND 60
           M ANGGSALDRKQLVAS LAKHF+LD ++L GE+   DF+ YV+N+LK SRNGAS+DDN 
Sbjct: 1   MVANGGSALDRKQLVASALAKHFALDHNALIGENAECDFRAYVLNILKASRNGASVDDNI 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EV KWITFADSFPVDSKAC +VLKQLNEEL  KSVLLG GLK SEADV+VFSVLHP V  
Sbjct: 61  EVTKWITFADSFPVDSKACFDVLKQLNEELAPKSVLLGKGLKPSEADVLVFSVLHPYVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPP---GKVVANNVEEDSNAK 180
                               NKEN GELFQKI L+KC FDPP    KVVANNV EDSNAK
Sbjct: 121 LSNAEMEKLPHVLRWMDYIQNKENFGELFQKILLQKCEFDPPLQGNKVVANNVNEDSNAK 180

Query: 181 KSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIR 240
           KSSQSTKVS+KPQ+NPDTKKTD GKKEK+KKEAAPEKKKP+ETET DKEKEVSVSLLNIR
Sbjct: 181 KSSQSTKVSEKPQVNPDTKKTDAGKKEKEKKEAAPEKKKPVETETADKEKEVSVSLLNIR 240

Query: 241 VGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKL 300
           VGLIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+ SPEELTNR VVLITNVKPGKL
Sbjct: 241 VGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYYSPEELTNRRVVLITNVKPGKL 300

Query: 301 RDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITP 360
           RDVMS+GLVLCASNEDHT+VEPLLPPEGA IGEQISF+GVDGKPEDVLNPKKKQLDKITP
Sbjct: 301 RDVMSEGLVLCASNEDHTVVEPLLPPEGANIGEQISFSGVDGKPEDVLNPKKKQLDKITP 360

Query: 361 HLFTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           HLFT+DKG A +KGIPFMTSAG CTS+I K SIK
Sbjct: 361 HLFTNDKGEATFKGIPFMTSAGPCTSTISKGSIK 394

[Close]

BLAST of CmoCh04G001000 vs. TrEMBL
Match: A0A061FTH7_THECC (OB-fold nucleic acid binding domain-containing protein isoform 3 OS=Theobroma cacao GN=TCM_045490 PE=4 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 2.2e-126
Identity = 254/391 (64.96%), Postives = 293/391 (74.94%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGE--SMDFKTYVVNLLKTSRNGASIDDND 60
           MA +G +   R+QL+ S + KHFSLD  + + E    D K   +N+LK+S    S  +ND
Sbjct: 1   MATSGNNDPKRRQLIVSSICKHFSLDPKAFSSEVPGNDIKNLYLNILKSSGK-ESPKNND 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EVMKWI FA+SFP DSKAC  VL +LN +L QKSVLLGNG   SEADVIVFS +H SV  
Sbjct: 61  EVMKWIAFAESFPKDSKACHGVLNELNADLAQKSVLLGNGFTPSEADVIVFSAVHNSVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSS 180
                               +KE++G LFQKI LEK  F+P     A   E D NAKK+ 
Sbjct: 121 LSNSEKDKLPHVMRWMDYIQSKEDLGALFQKILLEKPGFEPQRAKAAAKPEIDLNAKKTV 180

Query: 181 QSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGL 240
           QSTK++DK     + KK+D GKK K  KEA  EKKK  ETE +DK+KE+SVSLLNI+VGL
Sbjct: 181 QSTKIADKSVAEVNAKKSDSGKKAKGDKEAVQEKKKAPETEASDKDKELSVSLLNIQVGL 240

Query: 241 IRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDV 300
           I KAWKHPSADSLLVEEIDVGEA +RQVVSGLAK+CSPE+LTNR VVLITNVKPGKLRDV
Sbjct: 241 ICKAWKHPSADSLLVEEIDVGEAKLRQVVSGLAKYCSPEQLTNRRVVLITNVKPGKLRDV 300

Query: 301 MSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLF 360
           MS+GLVLCASNEDHT VEPLLPPEGAK GE +SF+G+DGKP+DVLNPKKKQL+KITPHLF
Sbjct: 301 MSEGLVLCASNEDHTAVEPLLPPEGAKPGEHVSFSGIDGKPDDVLNPKKKQLEKITPHLF 360

Query: 361 TDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           TD+KGVA +KGIPFMTSAG CTSSIPKASIK
Sbjct: 361 TDEKGVATFKGIPFMTSAGPCTSSIPKASIK 390

[Close]

BLAST of CmoCh04G001000 vs. TrEMBL
Match: A0A067JFS8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03314 PE=4 SV=1)

HSP 1 Score: 457.6 bits (1176), Expect = 1.4e-125
Identity = 244/380 (64.21%), Postives = 290/380 (76.32%), Query Frame = 1


Query: 8   ALDRKQLVASVLAKHFSLDFSSLTGESMDFKTYVVNLLKTSRNGASIDDNDEVMKWITFA 67
           +L RKQ VAS L+KH  L++ +      + K+   N+LK+S       +NDEVMKWI FA
Sbjct: 9   SLKRKQTVASALSKHLDLNYGASVSGEDNIKSLYTNILKSSGKWLPQKENDEVMKWIEFA 68

Query: 68  DSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV----------- 127
           +SFP+DS+AC + L +LN+EL  KSV+LGNGL  SE DVIVFSV+HPSV           
Sbjct: 69  ESFPIDSQACFDALNRLNQELAPKSVILGNGLTPSEVDVIVFSVVHPSVIRLSHSEREKL 128

Query: 128 -----------NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSSQSTKVSDKP 187
                      NKE + +LF+KI LEK  F+P G   A   E DSNAKK SQ+TK ++K 
Sbjct: 129 TYVMRWMDYIQNKEELVDLFEKILLEKPLFEPLGARDAAKAEIDSNAKKISQNTKNTEKS 188

Query: 188 QLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGLIRKAWKHPS 247
           + + + KK+D G K  + K+A  EKKKP +TE  +K+KEVSVSLLNI+VGLIRKAWKHPS
Sbjct: 189 EADKNVKKSDAGAKVTESKDAKQEKKKPPQTEPAEKDKEVSVSLLNIQVGLIRKAWKHPS 248

Query: 248 ADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVLCA 307
           ADSLLVEEIDVGE+ +RQVVSGLAK+CSP+ELTNR VVLITNVK GKLRDVMS+GLVLCA
Sbjct: 249 ADSLLVEEIDVGESKLRQVVSGLAKYCSPDELTNRRVVLITNVKSGKLRDVMSEGLVLCA 308

Query: 308 SNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDDKGVAMY 366
           SNEDH++VEPLLPPEGAKIGE+ISF+G+DGKPEDVLNPKKKQLDKITP+LFTDDKGVA Y
Sbjct: 309 SNEDHSVVEPLLPPEGAKIGERISFSGIDGKPEDVLNPKKKQLDKITPNLFTDDKGVATY 368

[Close]

BLAST of CmoCh04G001000 vs. TrEMBL
Match: A0A0D2RQS7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 3.2e-125
Identity = 256/391 (65.47%), Postives = 293/391 (74.94%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGE--SMDFKTYVVNLLKTSRNGASIDDND 60
           MA NG S L RKQ + S L KHFSLD  + + +    D KT  +N+LK+S    S  +ND
Sbjct: 1   MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGK-ESPQNND 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EVMKWI FADSFP DSKAC   L +LN +L +KSVLLGNG   SEADVIVFSV+H S+  
Sbjct: 61  EVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIA 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSS 180
                               N E++G LF+KI LEK  F+P     A   E  S+AK + 
Sbjct: 121 LSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTV 180

Query: 181 QSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGL 240
           Q+TK++DKP    + KK+D  KK K  KEA PEKK P E E +DK+KE+SVSLLNI+VGL
Sbjct: 181 QNTKIADKPDTEKNAKKSDSAKKAKGDKEAVPEKKAP-EKEASDKDKELSVSLLNIQVGL 240

Query: 241 IRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDV 300
           IRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+CSPE+LTNR VVLITNVKPGKLRDV
Sbjct: 241 IRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKLRDV 300

Query: 301 MSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLF 360
           MS+GLVLCASNEDHT VEPLLPPEGAK GE ISF+G+DGKPEDVLNPKKKQL+KITP+LF
Sbjct: 301 MSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITPNLF 360

Query: 361 TDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           TD+KGVA +KGIPFMTSAG CTSSIPKASIK
Sbjct: 361 TDEKGVATFKGIPFMTSAGPCTSSIPKASIK 389

[Close]

BLAST of CmoCh04G001000 vs. TrEMBL
Match: A0A0D2UW45_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 256/394 (64.97%), Postives = 293/394 (74.37%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGE--SMDFKTYVVNLLKTSRNGASIDDND 60
           MA NG S L RKQ + S L KHFSLD  + + +    D KT  +N+LK+S    S  +ND
Sbjct: 1   MATNGTSDLKRKQGIVSSLCKHFSLDPKAFSSQVPGNDIKTLYINILKSSGK-ESPQNND 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EVMKWI FADSFP DSKAC   L +LN +L +KSVLLGNG   SEADVIVFSV+H S+  
Sbjct: 61  EVMKWIAFADSFPSDSKACHGGLNELNTDLAKKSVLLGNGFTPSEADVIVFSVIHSSMIA 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSS 180
                               N E++G LF+KI LEK  F+P     A   E  S+AK + 
Sbjct: 121 LSTPEKEKLPHVMRWMDYIQNSEDLGALFEKILLEKPVFEPQIAKAAAKPEVTSSAKGTV 180

Query: 181 QSTKVSDKPQLNPDTKKTDPG---KKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIR 240
           Q+TK++DKP    + KK+D     KK K  KEA PEKK P E E +DK+KE+SVSLLNI+
Sbjct: 181 QNTKIADKPDTEKNAKKSDSADAKKKAKGDKEAVPEKKAP-EKEASDKDKELSVSLLNIQ 240

Query: 241 VGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKL 300
           VGLIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+CSPE+LTNR VVLITNVKPGKL
Sbjct: 241 VGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEDLTNRRVVLITNVKPGKL 300

Query: 301 RDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITP 360
           RDVMS+GLVLCASNEDHT VEPLLPPEGAK GE ISF+G+DGKPEDVLNPKKKQL+KITP
Sbjct: 301 RDVMSEGLVLCASNEDHTKVEPLLPPEGAKPGECISFSGIDGKPEDVLNPKKKQLEKITP 360

Query: 361 HLFTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           +LFTD+KGVA +KGIPFMTSAG CTSSIPKASIK
Sbjct: 361 NLFTDEKGVATFKGIPFMTSAGPCTSSIPKASIK 392

[Close]

BLAST of CmoCh04G001000 vs. TAIR10
Match: AT2G40660.1 (AT2G40660.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 399.1 bits (1024), Expect = 3.0e-111
Identity = 233/388 (60.05%), Postives = 275/388 (70.88%), Query Frame = 1


Query: 12  KQLVASVLAKHFSLD---FSSLTGESMDFKTYVVNLLKTSRNGASIDDNDEVMKWITFAD 71
           KQ++ S L KHFSLD   F    GES D KT   N+LK S    S  +ND V+KW+ FA+
Sbjct: 6   KQMILSALCKHFSLDPEPFVGGAGES-DIKTLYSNVLKASGKEVSAQNND-VLKWLDFAE 65

Query: 72  SFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV------------ 131
            F  DSK     L++LN EL  KSVLLGNGL  S ADV VFS LH SV            
Sbjct: 66  GFSSDSKDWFSALEKLNLELATKSVLLGNGLTPSAADVAVFSALHSSVLGLSDSDKEKVP 125

Query: 132 ----------NKENIGELFQKI--QLEKCNFDPPGKVVANNVEEDSNAKKSSQSTKVSDK 191
                     NKE +  LF  I  +L + +F+ P   +   VE +SN+KK+++  K  DK
Sbjct: 126 HVIRWVNYIQNKEELSTLFAPIPVKLPEFSFEVPKPAI--KVETNSNSKKAAEGVKPVDK 185

Query: 192 PQLNPD--TKKTDPGKKEKD---KKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGLIRK 251
           P + P   TKKT+P + +K+   +K+A  EKKKP E E   KE E+SVSLLNI+VGLIRK
Sbjct: 186 PDVQPQLGTKKTEPEEPKKNAAKEKDAKKEKKKPAEPEPAKKEAELSVSLLNIQVGLIRK 245

Query: 252 AWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQ 311
           AWKHPSADSLLVEEIDVGE  VRQVVSGLAKFCSPE+LTNR V LITNVKPGKLRDVMSQ
Sbjct: 246 AWKHPSADSLLVEEIDVGEDKVRQVVSGLAKFCSPEDLTNRLVALITNVKPGKLRDVMSQ 305

Query: 312 GLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDD 368
           GLVLCAS+EDH++VEPLLPP GAK GE++SF+G++GKPEDVLNPKKKQL+KITP L+TD+
Sbjct: 306 GLVLCASSEDHSVVEPLLPPAGAKPGERVSFSGIEGKPEDVLNPKKKQLEKITPGLYTDE 365

[Close]

BLAST of CmoCh04G001000 vs. TAIR10
Match: AT4G13780.1 (AT4G13780.1 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative)

HSP 1 Score: 159.1 bits (401), Expect = 5.3e-39
Identity = 96/219 (43.84%), Postives = 140/219 (63.93%), Query Frame = 1


Query: 150 SNAKKSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSL 209
           S+ +   ++  ++D  QLN  TK +D  K++   K     K +P        ++E++++ 
Sbjct: 588 SDRRARDEAANLAD--QLNK-TKLSDAKKQKASSKGGGKPKPQPAA------DREITMAR 647

Query: 210 LNIRVGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVK 269
           L+IRVG I KA KHP AD+L VEEIDVG   +R VVSGL K+   EE+ NR V ++ N+K
Sbjct: 648 LDIRVGKIVKAEKHPKADALYVEEIDVGGGEIRTVVSGLVKYIPLEEMQNRMVCVLCNLK 707

Query: 270 PGKLRDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLD 329
           P K+RD++SQ +VL AS+ D + VE + PP+ A IGE+++F G +G+P+DVLNPKKK  +
Sbjct: 708 PAKMRDIVSQAMVLAASSSDGSKVELVEPPKTANIGERVTFPGFEGEPDDVLNPKKKVWE 767

Query: 330 KITPHLFTDDKGVAMYKGIPFMTSAGAC-TSSIPKASIK 368
            +   L T +  VA YK +PF TSAG C  SSI   +I+
Sbjct: 768 TLLVDLNTKENLVACYKDVPFTTSAGVCKVSSISNGTIR 797

[Close]

BLAST of CmoCh04G001000 vs. TAIR10
Match: AT3G59980.1 (AT3G59980.1 Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-27
Identity = 75/189 (39.68%), Postives = 112/189 (59.26%), Query Frame = 1


Query: 186 AAPEKKKPLETETTDKEKEVSVSLLNIRVGLIRKAWKHPSADSLLVEEIDVGEANVRQVV 245
           +A E +K  E++  ++  + + +LL+I+VG I KAW+H  ADSL VEE+D+GEA  R + 
Sbjct: 85  SADESEKKSESQKEEENVKETANLLDIKVGRIVKAWQHEEADSLYVEEVDIGEAEPRIIC 144

Query: 246 SGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVLCASNEDHTIVEPLLPPEGAKIG 305
           SGL K+   + L    VV++ N+KP  +R V S G++L AS+  H  VE L+PPEG+  G
Sbjct: 145 SGLVKYVPLDLLQGASVVVLANLKPRNMRGVKSCGMLLAASDAAHENVELLVPPEGSVPG 204

Query: 306 EQISFAGVDGKPEDVLNP-------KKKQLDKITPHLFTDDKGVAMYKGIPFMTSAGACT 365
           +++ F G +   E +  P       KKK  + + P L TD  GV+M K     TS+G  T
Sbjct: 205 DRVWF-GNEEDLEQLPEPAPPNKVQKKKMWELVQPLLKTDASGVSMLKEHLMRTSSGLVT 264

Query: 366 S-SIPKASI 367
           S S+  A+I
Sbjct: 265 SKSLRNANI 272

[Close]

BLAST of CmoCh04G001000 vs. NCBI nr
Match: gi|659114227|ref|XP_008456962.1| (PREDICTED: probable methionine--tRNA ligase isoform X2 [Cucumis melo])

HSP 1 Score: 599.0 bits (1543), Expect = 5.7e-168
Identity = 314/392 (80.10%), Postives = 342/392 (87.24%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGESM--DFKTYVVNLLKTSRNGASIDDND 60
           M ANGGSAL R+ LVAS LAKHF+LD ++L GE+   DF+TYV+N+LKTSRNGAS+DDND
Sbjct: 1   MVANGGSALGRRHLVASALAKHFALDHNALIGENAECDFRTYVLNILKTSRNGASVDDND 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EV KWITFADSFPVDSKAC ++LKQLNEEL  KSVLLG GLK SEADV+VFSVLHP V  
Sbjct: 61  EVTKWITFADSFPVDSKACFDILKQLNEELAPKSVLLGKGLKPSEADVLVFSVLHPYVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPPG-KVVANNVEEDSNAKKS 180
                               NK+N GELFQKI L+KC F+PPG KVVANNV+EDSNAKKS
Sbjct: 121 LSNAEMEKLPHVLRWMDYIQNKQNFGELFQKILLQKCEFNPPGNKVVANNVDEDSNAKKS 180

Query: 181 SQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVG 240
           SQSTKVS+KPQ+NPDTKKTD GKKEK+KKEAAPEKKKP+ETET DKEKEVSVSLLNI+VG
Sbjct: 181 SQSTKVSEKPQVNPDTKKTDVGKKEKEKKEAAPEKKKPVETETPDKEKEVSVSLLNIKVG 240

Query: 241 LIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRD 300
           LIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+CSPEELTNRHVVLITNVKPGKLRD
Sbjct: 241 LIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEELTNRHVVLITNVKPGKLRD 300

Query: 301 VMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHL 360
           VMS+GLVLCASNEDHT+VEPLLPP+GAKIGEQISF+GVDGKPEDVLNPKKKQLDKITPHL
Sbjct: 301 VMSEGLVLCASNEDHTVVEPLLPPKGAKIGEQISFSGVDGKPEDVLNPKKKQLDKITPHL 360

Query: 361 FTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           FT+DKG A +KGIPFMTSAG CTSSI K SIK
Sbjct: 361 FTNDKGEATFKGIPFMTSAGPCTSSISKGSIK 392

[Close]

BLAST of CmoCh04G001000 vs. NCBI nr
Match: gi|659114225|ref|XP_008456961.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1 [Cucumis melo])

HSP 1 Score: 595.9 bits (1535), Expect = 4.8e-167
Identity = 313/394 (79.44%), Postives = 341/394 (86.55%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGESM--DFKTYVVNLLKTSRNGASIDDND 60
           M ANGGSAL R+ LVAS LAKHF+LD ++L GE+   DF+TYV+N+LKTSRNGAS+DDND
Sbjct: 1   MVANGGSALGRRHLVASALAKHFALDHNALIGENAECDFRTYVLNILKTSRNGASVDDND 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EV KWITFADSFPVDSKAC ++LKQLNEEL  KSVLLG GLK SEADV+VFSVLHP V  
Sbjct: 61  EVTKWITFADSFPVDSKACFDILKQLNEELAPKSVLLGKGLKPSEADVLVFSVLHPYVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPP---GKVVANNVEEDSNAK 180
                               NK+N GELFQKI L+KC F+PP    KVVANNV+EDSNAK
Sbjct: 121 LSNAEMEKLPHVLRWMDYIQNKQNFGELFQKILLQKCEFNPPLQGNKVVANNVDEDSNAK 180

Query: 181 KSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIR 240
           KSSQSTKVS+KPQ+NPDTKKTD GKKEK+KKEAAPEKKKP+ETET DKEKEVSVSLLNI+
Sbjct: 181 KSSQSTKVSEKPQVNPDTKKTDVGKKEKEKKEAAPEKKKPVETETPDKEKEVSVSLLNIK 240

Query: 241 VGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKL 300
           VGLIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+CSPEELTNRHVVLITNVKPGKL
Sbjct: 241 VGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYCSPEELTNRHVVLITNVKPGKL 300

Query: 301 RDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITP 360
           RDVMS+GLVLCASNEDHT+VEPLLPP+GAKIGEQISF+GVDGKPEDVLNPKKKQLDKITP
Sbjct: 301 RDVMSEGLVLCASNEDHTVVEPLLPPKGAKIGEQISFSGVDGKPEDVLNPKKKQLDKITP 360

Query: 361 HLFTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           HLFT+DKG A +KGIPFMTSAG CTSSI K SIK
Sbjct: 361 HLFTNDKGEATFKGIPFMTSAGPCTSSISKGSIK 394

[Close]

BLAST of CmoCh04G001000 vs. NCBI nr
Match: gi|449457397|ref|XP_004146435.1| (PREDICTED: probable methionine--tRNA ligase isoform X2 [Cucumis sativus])

HSP 1 Score: 593.2 bits (1528), Expect = 3.1e-166
Identity = 315/392 (80.36%), Postives = 337/392 (85.97%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGESM--DFKTYVVNLLKTSRNGASIDDND 60
           M ANGGSALDRKQLVAS LAKHF+LD ++L GE+   DF+ YV+N+LK SRNGAS+DDN 
Sbjct: 1   MVANGGSALDRKQLVASALAKHFALDHNALIGENAECDFRAYVLNILKASRNGASVDDNI 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EV KWITFADSFPVDSKAC +VLKQLNEEL  KSVLLG GLK SEADV+VFSVLHP V  
Sbjct: 61  EVTKWITFADSFPVDSKACFDVLKQLNEELAPKSVLLGKGLKPSEADVLVFSVLHPYVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPPG-KVVANNVEEDSNAKKS 180
                               NKEN GELFQKI L+KC FDPPG KVVANNV EDSNAKKS
Sbjct: 121 LSNAEMEKLPHVLRWMDYIQNKENFGELFQKILLQKCEFDPPGNKVVANNVNEDSNAKKS 180

Query: 181 SQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVG 240
           SQSTKVS+KPQ+NPDTKKTD GKKEK+KKEAAPEKKKP+ETET DKEKEVSVSLLNIRVG
Sbjct: 181 SQSTKVSEKPQVNPDTKKTDAGKKEKEKKEAAPEKKKPVETETADKEKEVSVSLLNIRVG 240

Query: 241 LIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRD 300
           LIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+ SPEELTNR VVLITNVKPGKLRD
Sbjct: 241 LIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYYSPEELTNRRVVLITNVKPGKLRD 300

Query: 301 VMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHL 360
           VMS+GLVLCASNEDHT+VEPLLPPEGA IGEQISF+GVDGKPEDVLNPKKKQLDKITPHL
Sbjct: 301 VMSEGLVLCASNEDHTVVEPLLPPEGANIGEQISFSGVDGKPEDVLNPKKKQLDKITPHL 360

Query: 361 FTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           FT+DKG A +KGIPFMTSAG CTS+I K SIK
Sbjct: 361 FTNDKGEATFKGIPFMTSAGPCTSTISKGSIK 392

[Close]

BLAST of CmoCh04G001000 vs. NCBI nr
Match: gi|778701570|ref|XP_011655049.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 590.1 bits (1520), Expect = 2.6e-165
Identity = 314/394 (79.70%), Postives = 336/394 (85.28%), Query Frame = 1


Query: 1   MAANGGSALDRKQLVASVLAKHFSLDFSSLTGESM--DFKTYVVNLLKTSRNGASIDDND 60
           M ANGGSALDRKQLVAS LAKHF+LD ++L GE+   DF+ YV+N+LK SRNGAS+DDN 
Sbjct: 1   MVANGGSALDRKQLVASALAKHFALDHNALIGENAECDFRAYVLNILKASRNGASVDDNI 60

Query: 61  EVMKWITFADSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV-- 120
           EV KWITFADSFPVDSKAC +VLKQLNEEL  KSVLLG GLK SEADV+VFSVLHP V  
Sbjct: 61  EVTKWITFADSFPVDSKACFDVLKQLNEELAPKSVLLGKGLKPSEADVLVFSVLHPYVIG 120

Query: 121 --------------------NKENIGELFQKIQLEKCNFDPP---GKVVANNVEEDSNAK 180
                               NKEN GELFQKI L+KC FDPP    KVVANNV EDSNAK
Sbjct: 121 LSNAEMEKLPHVLRWMDYIQNKENFGELFQKILLQKCEFDPPLQGNKVVANNVNEDSNAK 180

Query: 181 KSSQSTKVSDKPQLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIR 240
           KSSQSTKVS+KPQ+NPDTKKTD GKKEK+KKEAAPEKKKP+ETET DKEKEVSVSLLNIR
Sbjct: 181 KSSQSTKVSEKPQVNPDTKKTDAGKKEKEKKEAAPEKKKPVETETADKEKEVSVSLLNIR 240

Query: 241 VGLIRKAWKHPSADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKL 300
           VGLIRKAWKHPSADSLLVEEIDVGEA VRQVVSGLAK+ SPEELTNR VVLITNVKPGKL
Sbjct: 241 VGLIRKAWKHPSADSLLVEEIDVGEAKVRQVVSGLAKYYSPEELTNRRVVLITNVKPGKL 300

Query: 301 RDVMSQGLVLCASNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITP 360
           RDVMS+GLVLCASNEDHT+VEPLLPPEGA IGEQISF+GVDGKPEDVLNPKKKQLDKITP
Sbjct: 301 RDVMSEGLVLCASNEDHTVVEPLLPPEGANIGEQISFSGVDGKPEDVLNPKKKQLDKITP 360

Query: 361 HLFTDDKGVAMYKGIPFMTSAGACTSSIPKASIK 368
           HLFT+DKG A +KGIPFMTSAG CTS+I K SIK
Sbjct: 361 HLFTNDKGEATFKGIPFMTSAGPCTSTISKGSIK 394

[Close]

BLAST of CmoCh04G001000 vs. NCBI nr
Match: gi|802778401|ref|XP_012091137.1| (PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas])

HSP 1 Score: 463.0 bits (1190), Expect = 4.9e-127
Identity = 247/382 (64.66%), Postives = 293/382 (76.70%), Query Frame = 1


Query: 8   ALDRKQLVASVLAKHFSLDFSSLTGESMDFKTYVVNLLKTSRNGASIDDNDEVMKWITFA 67
           +L RKQ VAS L+KH  L++ +      + K+   N+LK+S       +NDEVMKWI FA
Sbjct: 9   SLKRKQTVASALSKHLDLNYGASVSGEDNIKSLYTNILKSSGKWLPQKENDEVMKWIEFA 68

Query: 68  DSFPVDSKACLEVLKQLNEELVQKSVLLGNGLKTSEADVIVFSVLHPSV----------- 127
           +SFP+DS+AC + L +LN+EL  KSV+LGNGL  SE DVIVFSV+HPSV           
Sbjct: 69  ESFPIDSQACFDALNRLNQELAPKSVILGNGLTPSEVDVIVFSVVHPSVIRLSHSEREKL 128

Query: 128 -----------NKENIGELFQKIQLEKCNFDPPGKVVANNVEEDSNAKKSSQSTKVSDKP 187
                      NKE + +LF+KI LEK  F+P G   A   E DSNAKK SQ+TK ++K 
Sbjct: 129 TYVMRWMDYIQNKEELVDLFEKILLEKPLFEPLGARDAAKAEIDSNAKKISQNTKNTEKS 188

Query: 188 QLNPDTKKTDPGKKEKDKKEAAPEKKKPLETETTDKEKEVSVSLLNIRVGLIRKAWKHPS 247
           + + + KK+D G K  + K+A  EKKKP +TE  +K+KEVSVSLLNI+VGLIRKAWKHPS
Sbjct: 189 EADKNVKKSDAGAKVTESKDAKQEKKKPPQTEPAEKDKEVSVSLLNIQVGLIRKAWKHPS 248

Query: 248 ADSLLVEEIDVGEANVRQVVSGLAKFCSPEELTNRHVVLITNVKPGKLRDVMSQGLVLCA 307
           ADSLLVEEIDVGE+ +RQVVSGLAK+CSP+ELTNR VVLITNVK GKLRDVMS+GLVLCA
Sbjct: 249 ADSLLVEEIDVGESKLRQVVSGLAKYCSPDELTNRRVVLITNVKSGKLRDVMSEGLVLCA 308

Query: 308 SNEDHTIVEPLLPPEGAKIGEQISFAGVDGKPEDVLNPKKKQLDKITPHLFTDDKGVAMY 367
           SNEDH++VEPLLPPEGAKIGE+ISF+G+DGKPEDVLNPKKKQLDKITP+LFTDDKGVA Y
Sbjct: 309 SNEDHSVVEPLLPPEGAKIGERISFSGIDGKPEDVLNPKKKQLDKITPNLFTDDKGVATY 368

The following BLAST results are available for this feature:

BLAST of CmoCh04G001000 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SYM_ORYSJ	1.7e-42	46.29	Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os06g0508700...	[more]
SYMC_ARATH	9.4e-38	43.84	Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 S...	[more]
AIMP1_HUMAN	3.1e-33	36.66	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sa...	[more]
AIMP1_MOUSE	2.9e-31	36.25	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus mus...	[more]
AIMP1_CRIGR	6.5e-31	35.87	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetu...	[more]

BLAST of CmoCh04G001000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQP5_CUCSA	1.8e-165	79.70	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G223010 PE=4 SV=1	[more]
A0A061FTH7_THECC	2.2e-126	64.96	OB-fold nucleic acid binding domain-containing protein isoform 3 OS=Theobroma ca...	[more]
A0A067JFS8_JATCU	1.4e-125	64.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03314 PE=4 SV=1	[more]
A0A0D2RQS7_GOSRA	3.2e-125	65.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1	[more]
A0A0D2UW45_GOSRA	1.3e-123	64.97	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G209900 PE=4 SV=1	[more]

BLAST of CmoCh04G001000 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G40660.1	3.0e-111	60.05	Nucleic acid-binding, OB-fold-like protein	[more]
AT4G13780.1	5.3e-39	43.84	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putat...	[more]
AT3G59980.1	7.9e-27	39.68	Nucleic acid-binding, OB-fold-like protein	[more]

BLAST of CmoCh04G001000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114227\|ref\|XP_008456962.1\|	5.7e-168	80.10	PREDICTED: probable methionine--tRNA ligase isoform X2 [Cucumis melo]	[more]
gi\|659114225\|ref\|XP_008456961.1\|	4.8e-167	79.44	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]
gi\|449457397\|ref\|XP_004146435.1\|	3.1e-166	80.36	PREDICTED: probable methionine--tRNA ligase isoform X2 [Cucumis sativus]	[more]
gi\|778701570\|ref\|XP_011655049.1\|	2.6e-165	79.70	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]
gi\|802778401\|ref\|XP_012091137.1\|	4.9e-127	64.66	PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002547	tRNA-bd_dom
IPR010987	Glutathione-S-Trfase_C-like
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0000049	tRNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006464	cellular protein modification process
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0000049	tRNA binding
molecular_function	GO:0016874	ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G001000.1	CmoCh04G001000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002547	tRNA-binding domain	PFAM	PF01588	tRNA_bind	coord: 212..306 score: 2.5
IPR002547	tRNA-binding domain	PROFILE	PS50886	TRBD	coord: 206..309 score: 29
IPR010987	Glutathione S-transferase, C-terminal-like	unknown	SSF47616	GST C-terminal domain-like	coord: 40..118 score: 8.16
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 207..360 score: 1.8
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 208..354 score: 5.14
None	No IPR available	PANTHER	PTHR11586	FAMILY NOT NAMED	coord: 8..367 score: 1.5E
None	No IPR available	PANTHER	PTHR11586:SF1	NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN	coord: 8..367 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G001000	Cucsa.143880	Cucumber (Gy14) v1	cgycmoB0401
CmoCh04G001000	CmaCh04G001010	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G001000	Cla007299	Watermelon (97103) v1	cmowmB685
CmoCh04G001000	Csa5G223010	Cucumber (Chinese Long) v2	cmocuB737
CmoCh04G001000	MELO3C020154	Melon (DHL92) v3.5.1	cmomeB634
CmoCh04G001000	ClCG07G005160	Watermelon (Charleston Gray)	cmowcgB676
CmoCh04G001000	CSPI05G11610	Wild cucumber (PI 183967)	cmocpiB747
CmoCh04G001000	Lsi04G010160	Bottle gourd (USVL1VR-Ls)	cmolsiB663
CmoCh04G001000	Cp4.1LG01g05680	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G001000	MELO3C020154.2	Melon (DHL92) v3.6.1	cmomedB739
CmoCh04G001000	CsaV3_5G011010	Cucumber (Chinese Long) v3	cmocucB0873
CmoCh04G001000	Cla97C07G133520	Watermelon (97103) v2	cmowmbB755
CmoCh04G001000	Bhi07G000411	Wax gourd	cmowgoB0889
CmoCh04G001000	CsGy5G008870	Cucumber (Gy14) v2	cgybcmoB652
CmoCh04G001000	Carg24470	Silver-seed gourd	carcmoB1219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G001000	Cucurbita maxima (Rimu)	cmacmoB731
CmoCh04G001000	Wild cucumber (PI 183967)	cmocpiB731
CmoCh04G001000	Cucurbita pepo (Zucchini)	cmocpeB674
CmoCh04G001000	Cucumber (Gy14) v2	cgybcmoB636
CmoCh04G001000	Silver-seed gourd	carcmoB0924
CmoCh04G001000	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G001000	Cucumber (Gy14) v1	cgycmoB0494