CmoCh03G014810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G014810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Vacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein
Location	Cmo_Chr03 : 10634721 .. 10634987 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCGTGATTACATTTCTAAGTAAATACTCTTCTGGACCAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAG

mRNA sequence

ATGCGCGTGATTACATTTCTAAGTAAATACTCTTCTGGACCAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAG

Coding sequence (CDS)

ATGCGCGTGATTACATTTCTAAGTAAATACTCTTCTGGACCAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAATGTTGTCATTGCTATTTATATTATCATGGCAATGAAAGAACCCTCTAGTAAACATGAACCGGATCCTGCATTTGTTGCCGAGGCAAAAGCTAGTATAAACCAGTCTCCTGGGAAAGCAGAGGACCCCTCACAGGCCAATAATAAGAAGGAAGAATAG

Homology

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BLAST of CmoCh03G014810 vs. TrEMBL
Match: A0A0A0KPB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526400 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.7e-27
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDP F+AEAKASINQS 
Sbjct: 204 PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQST 263

Query: 74  GKAEDPSQANNKKEE 89
           GKA+ PSQA NKKEE
Sbjct: 264 GKADGPSQAQNKKEE 278

[Close]

BLAST of CmoCh03G014810 vs. TrEMBL
Match: F6HFT6_VITVI (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Vitis vinifera GN=VIT_01s0011g01270 PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-19
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQS- 73
           PGSTQL+ +S TLLSGF+AVISVN+VIA YI MAMKEPS KHEPDPAF+A AKAS++QS 
Sbjct: 32  PGSTQLSSYSATLLSGFIAVISVNIVIAFYIFMAMKEPSDKHEPDPAFLAAAKASVSQST 91

Query: 74  PGKAEDPSQANNKKE 88
           PG+ EDPSQ+ +K+E
Sbjct: 92  PGETEDPSQSRDKQE 106

[Close]

BLAST of CmoCh03G014810 vs. TrEMBL
Match: A0A067JWH7_JATCU (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Jatropha curcas GN=JCGZ_27104 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 8.1e-19
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PG T L+PH+LTLLSGFLAVISVNVVIA YI MAMKEP+ KHEPDP FV++AKAS++Q  
Sbjct: 32  PGVTHLSPHALTLLSGFLAVISVNVVIAFYIYMAMKEPAEKHEPDPKFVSDAKASVSQLT 91

Query: 74  GKAEDPSQANNKKEE 89
           GKAE+ S  + KKEE
Sbjct: 92  GKAEESSSQSVKKEE 106

[Close]

BLAST of CmoCh03G014810 vs. TrEMBL
Match: B9MUL9_POPTR (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Populus trichocarpa GN=POPTR_0001s16060g PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PG T+L+PHSLTL+SGF+AVISVN+VIA YI MA+KEPS KHEPDPAF+AEA+AS++QS 
Sbjct: 32  PGITKLSPHSLTLMSGFVAVISVNIVIAFYIYMAIKEPSDKHEPDPAFLAEAEASVSQSA 91

Query: 74  GKAEDPSQANNKKE 88
           GK  D SQ+  K+E
Sbjct: 92  GKVGDSSQSVKKEE 105

[Close]

BLAST of CmoCh03G014810 vs. TrEMBL
Match: W9QP27_9ROSA (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Morus notabilis GN=L484_020864 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGS+ L+PH+LTL+SGF+AVISVN+VIA YI MAMKEPS KHEPDPAF+AEAKAS+NQS 
Sbjct: 32  PGSSNLSPHTLTLVSGFVAVISVNIVIAFYIYMAMKEPSHKHEPDPAFLAEAKASVNQSA 91

Query: 74  GKAEDPSQANNKKE 88
             ++  SQ+  K+E
Sbjct: 92  NDSDKSSQSLKKEE 105

[Close]

BLAST of CmoCh03G014810 vs. TAIR10
Match: AT1G05780.1 (AT1G05780.1 Vacuolar ATPase assembly integral membrane protein VMA21-like domain)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-16
Identity = 46/75 (61.33%), Postives = 54/75 (72.00%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGST L+PHSL LLSGFLAV+SVN VI  YI MAMKEP+ KH+PD AF+AEAK S+N+  
Sbjct: 32  PGSTTLSPHSLILLSGFLAVVSVNTVIVFYICMAMKEPADKHKPDAAFLAEAKDSVNKLT 91

Query: 74  GKAEDPSQANNKKEE 89
             A        KK+E
Sbjct: 92  KGATSSDDHALKKQE 106

[Close]

BLAST of CmoCh03G014810 vs. TAIR10
Match: AT2G31710.1 (AT2G31710.1 Vacuolar ATPase assembly integral membrane protein VMA21-like domain)

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-16
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGST L+PHSLTLLSGFLAV+SVNVVI  YI +A+KEP+ KH+PD +FVAEAK S+ +  
Sbjct: 32  PGSTTLSPHSLTLLSGFLAVVSVNVVIVFYICLALKEPADKHKPDASFVAEAKDSVKKLT 91

Query: 74  GKAEDPSQANNKKE 88
               +   A  K+E
Sbjct: 92  SGVTNTDPALKKQE 105

[Close]

BLAST of CmoCh03G014810 vs. NCBI nr
Match: gi|449433513|ref|XP_004134542.1| (PREDICTED: uncharacterized protein LOC101206493 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.8e-27
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDP F+AEAKASINQS 
Sbjct: 32  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQST 91

Query: 74  GKAEDPSQANNKKEE 89
           GKA+ PSQA NKKEE
Sbjct: 92  GKADGPSQAQNKKEE 106

[Close]

BLAST of CmoCh03G014810 vs. NCBI nr
Match: gi|700194302|gb|KGN49506.1| (hypothetical protein Csa_6G526400 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.8e-27
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDP F+AEAKASINQS 
Sbjct: 204 PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQST 263

Query: 74  GKAEDPSQANNKKEE 89
           GKA+ PSQA NKKEE
Sbjct: 264 GKADGPSQAQNKKEE 278

[Close]

BLAST of CmoCh03G014810 vs. NCBI nr
Match: gi|659077983|ref|XP_008439487.1| (PREDICTED: uncharacterized protein LOC103484273 [Cucumis melo])

HSP 1 Score: 125.9 bits (315), Expect = 3.4e-26
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PGST+LNPHSLTLLSGFLAVISVNVVI IYIIMAMKEPSSKHEPDPAF+AEAKASINQS 
Sbjct: 32  PGSTRLNPHSLTLLSGFLAVISVNVVIVIYIIMAMKEPSSKHEPDPAFLAEAKASINQST 91

Query: 74  GKAEDPSQANNKKEE 89
           GKA+ PS+A+NKKEE
Sbjct: 92  GKADGPSEAHNKKEE 106

[Close]

BLAST of CmoCh03G014810 vs. NCBI nr
Match: gi|297738017|emb|CBI27218.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-19
Identity = 55/75 (73.33%), Postives = 66/75 (88.00%), Query Frame = 1


Query: 14 PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQS- 73
          PGSTQL+ +S TLLSGF+AVISVN+VIA YI MAMKEPS KHEPDPAF+A AKAS++QS 
Sbjct: 18 PGSTQLSSYSATLLSGFIAVISVNIVIAFYIFMAMKEPSDKHEPDPAFLAAAKASVSQST 77

Query: 74 PGKAEDPSQANNKKE 88
          PG+ EDPSQ+ +K+E
Sbjct: 78 PGETEDPSQSRDKQE 92

[Close]

BLAST of CmoCh03G014810 vs. NCBI nr
Match: gi|743877779|ref|XP_011035493.1| (PREDICTED: uncharacterized protein LOC105133272 [Populus euphratica])

HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 14  PGSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPAFVAEAKASINQSP 73
           PG T+L+PHSLTLLSGF+AVISVN+VIA YI MA+KEPS KHEPDPAF+AEAKAS++QS 
Sbjct: 32  PGITKLSPHSLTLLSGFVAVISVNIVIAFYIYMAIKEPSDKHEPDPAFLAEAKASVSQSA 91

Query: 74  GKAEDPSQANNKKE 88
           GK  D SQ+  K+E
Sbjct: 92  GKVGDSSQSLKKEE 105

The following BLAST results are available for this feature:

BLAST of CmoCh03G014810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G014810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPB7_CUCSA	4.7e-27	92.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526400 PE=3 SV=1	[more]
F6HFT6_VITVI	1.6e-19	73.33	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Vitis vinife...	[more]
A0A067JWH7_JATCU	8.1e-19	72.00	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Jatropha cur...	[more]
B9MUL9_POPTR	1.4e-18	70.27	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Populus tric...	[more]
W9QP27_9ROSA	5.3e-18	68.92	Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Morus notabi...	[more]

BLAST of CmoCh03G014810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05780.1	2.6e-16	61.33	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]
AT2G31710.1	3.4e-16	59.46	Vacuolar ATPase assembly integral membrane protein VMA21-like domain	[more]

BLAST of CmoCh03G014810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433513\|ref\|XP_004134542.1\|	6.8e-27	92.00	PREDICTED: uncharacterized protein LOC101206493 [Cucumis sativus]	[more]
gi\|700194302\|gb\|KGN49506.1\|	6.8e-27	92.00	hypothetical protein Csa_6G526400 [Cucumis sativus]	[more]
gi\|659077983\|ref\|XP_008439487.1\|	3.4e-26	89.33	PREDICTED: uncharacterized protein LOC103484273 [Cucumis melo]	[more]
gi\|297738017\|emb\|CBI27218.3\|	2.3e-19	73.33	unnamed protein product [Vitis vinifera]	[more]
gi\|743877779\|ref\|XP_011035493.1\|	4.0e-19	72.97	PREDICTED: uncharacterized protein LOC105133272 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR019013	Vma21

Vocabulary: **Biological Process**
Term	Definition
GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0070072	vacuolar proton-transporting V-type ATPase complex assembly
cellular_component	GO:0030127	COPII vesicle coat
cellular_component	GO:0033116	endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0012507	ER to Golgi transport vesicle membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G014810.1	CmoCh03G014810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21	PANTHER	PTHR31792	FAMILY NOT NAMED	coord: 14..70 score: 2.9
IPR019013	Vacuolar ATPase assembly integral membrane protein Vma21	PFAM	PF09446	VMA21	coord: 4..48 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G014810	Cucsa.048670	Cucumber (Gy14) v1	cgycmoB0040
CmoCh03G014810	CmaCh03G014810	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G014810	Cla009867	Watermelon (97103) v1	cmowmB619
CmoCh03G014810	Csa6G526400	Cucumber (Chinese Long) v2	cmocuB667
CmoCh03G014810	MELO3C007032	Melon (DHL92) v3.5.1	cmomeB606
CmoCh03G014810	CSPI06G37290	Wild cucumber (PI 183967)	cmocpiB678
CmoCh03G014810	Cp4.1LG10g06850	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G014810	MELO3C007032.2	Melon (DHL92) v3.6.1	cmomedB695
CmoCh03G014810	CsaV3_6G052780	Cucumber (Chinese Long) v3	cmocucB0791
CmoCh03G014810	Bhi03G000198	Wax gourd	cmowgoB0782
CmoCh03G014810	CsGy6G036650	Cucumber (Gy14) v2	cgybcmoB809
CmoCh03G014810	Carg26327	Silver-seed gourd	carcmoB1157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G014810	Cucurbita pepo (Zucchini)	cmocpeB618
CmoCh03G014810	Bottle gourd (USVL1VR-Ls)	cmolsiB588
CmoCh03G014810	Silver-seed gourd	carcmoB0995
CmoCh03G014810	Watermelon (97103) v2	cmowmbB639
CmoCh03G014810	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh03G014810	Cucurbita maxima (Rimu)	cmacmoB861
CmoCh03G014810	Watermelon (Charleston Gray)	cmowcgB573