Cla009867 (gene) Watermelon (97103) v1

Overview
NameCla009867
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionVacuolar ATPase assembly integral membrane protein VMA21-like domain-containing protein (AHRD V1 ***- Q58G56_ARATH); contains Interpro domain(s) IPR019013 Vacuolar ATPase assembly integral membrane protein VMA21-like domain
LocationChr1 : 33637939 .. 33638862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGTGTTTAATACATGAGAGGGAACTCCCTATTTATAAAGCATTAATACACAAACAGGGTAAAAGAGATTGACCTAGGGATTTACCTAAATTACCCTATTCCTAGCTTCATCAGTATGCCATCTTTACAACTTCATCATGGCTACTGCCTACTGGTCATCAAACTCAATTATAAAAATTGCACGCTCAAAATTCGACCGTCCTATCTGTAAATTTGTTAGTATAGAGACAACTTGTGAGTGAAATTGCACGCTCAACTTCATGTAAACCTCTCTCAATAATAGTTGTCCCCTTCCTCACTAGTTACTACCCTCTTTACTCATGACCGTCGGTCATTACCAAATCACTCTTAACACTACCTTTGATTCGGTCCTTTTAAGATAATGATCTTTCTTTTAGCAAAAATGTCCCTTCATATCCCTTTTCTATAAGATAGGAAGGGCTCTTGCACAAATTGTACTTCTACGCAATTGCTCCATAGACCTTATATCTATTATCTATATATATATATATATGTGAAGAAGAATTGTTGGTATGGATATCGTCTTATTGTTATGTTAGGGATTTTGTTCATTATAGTTTTGATCTTGTACTTTTTGTTTCTTGTCGTTAACGTGTCTTTTCTTCCCTCTCTCCTCTTCCCTTTTATTTGCCTATGTGTGATTACATTTCTAAGTAAATACTTTTCTTGAGTAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAACATTGTCATTGCTATTTATATTATAATGGCAATGAAAGAACCTTCTAGTAAACATGAACCGGATCCTACATTTCTTGCCGAGGCAAAAGCTAGCATAAACCAGTCTACTGGGAAAGCTGATGACCCTTCACAAGCTCAGAATAAGAAGGAAGAATAG

mRNA sequence

ATGGGAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAACATTGTCATTGCTATTTATATTATAATGGCAATGAAAGAACCTTCTAGTAAACATGAACCGGATCCTACATTTCTTGCCGAGGCAAAAGCTAGCATAAACCAGTCTACTGGGAAAGCTGATGACCCTTCACAAGCTCAGAATAAGAAGGAAGAATAG

Coding sequence (CDS)

ATGGGAGGTTCAACACAATTGAATCCGCATTCTCTTACACTCTTGAGTGGATTCCTTGCTGTCATATCAGTCAACATTGTCATTGCTATTTATATTATAATGGCAATGAAAGAACCTTCTAGTAAACATGAACCGGATCCTACATTTCTTGCCGAGGCAAAAGCTAGCATAAACCAGTCTACTGGGAAAGCTGATGACCCTTCACAAGCTCAGAATAAGAAGGAAGAATAG

Protein sequence

MGGSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTGKADDPSQAQNKKEE
Homology
[Close]
BLAST of Cla009867 vs. TrEMBL
Match: A0A0A0KPB7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526400 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 1.6e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GSTQLNPHSLTLLSGFLAVISVN+VIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG
Sbjct: 205 GSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 264

Query: 63  KADDPSQAQNKKEE 77
           KAD PSQAQNKKEE
Sbjct: 265 KADGPSQAQNKKEE 278

[Close]
BLAST of Cla009867 vs. TrEMBL
Match: F6HFT6_VITVI (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Vitis vinifera GN=VIT_01s0011g01270 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 7.5e-21
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQST- 62
           GSTQL+ +S TLLSGF+AVISVNIVIA YI MAMKEPS KHEPDP FLA AKAS++QST 
Sbjct: 33  GSTQLSSYSATLLSGFIAVISVNIVIAFYIFMAMKEPSDKHEPDPAFLAAAKASVSQSTP 92

Query: 63  GKADDPSQAQNKKE 76
           G+ +DPSQ+++K+E
Sbjct: 93  GETEDPSQSRDKQE 106

[Close]
BLAST of Cla009867 vs. TrEMBL
Match: B9MUL9_POPTR (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Populus trichocarpa GN=POPTR_0001s16060g PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-21
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           G T+L+PHSLTL+SGF+AVISVNIVIA YI MA+KEPS KHEPDP FLAEA+AS++QS G
Sbjct: 33  GITKLSPHSLTLMSGFVAVISVNIVIAFYIYMAIKEPSDKHEPDPAFLAEAEASVSQSAG 92

Query: 63  KADDPSQAQNKKE 76
           K  D SQ+  K+E
Sbjct: 93  KVGDSSQSVKKEE 105

[Close]
BLAST of Cla009867 vs. TrEMBL
Match: M5WID5_PRUPE (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Prunus persica GN=PRUPE_ppa013759mg PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           G++ ++P+SLTLLSGFLAVISVNIVIA YI MAMKEPS KH+PDP FLAEAKAS+NQ T 
Sbjct: 33  GASDMSPYSLTLLSGFLAVISVNIVIAFYIYMAMKEPSDKHKPDPAFLAEAKASVNQPTV 92

Query: 63  KADDPSQAQNKKE 76
           +AD  SQ+  K+E
Sbjct: 93  EADSSSQSSKKEE 105

[Close]
BLAST of Cla009867 vs. TrEMBL
Match: W9QP27_9ROSA (Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Morus notabilis GN=L484_020864 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GS+ L+PH+LTL+SGF+AVISVNIVIA YI MAMKEPS KHEPDP FLAEAKAS+NQS  
Sbjct: 33  GSSNLSPHTLTLVSGFVAVISVNIVIAFYIYMAMKEPSHKHEPDPAFLAEAKASVNQSAN 92

Query: 63  KADDPSQAQNKKE 76
            +D  SQ+  K+E
Sbjct: 93  DSDKSSQSLKKEE 105

[Close]
BLAST of Cla009867 vs. NCBI nr
Match: gi|449433513|ref|XP_004134542.1| (PREDICTED: uncharacterized protein LOC101206493 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GSTQLNPHSLTLLSGFLAVISVN+VIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG
Sbjct: 33  GSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 92

Query: 63  KADDPSQAQNKKEE 77
           KAD PSQAQNKKEE
Sbjct: 93  KADGPSQAQNKKEE 106

[Close]
BLAST of Cla009867 vs. NCBI nr
Match: gi|700194302|gb|KGN49506.1| (hypothetical protein Csa_6G526400 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.3e-31
Identity = 72/74 (97.30%), Postives = 73/74 (98.65%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GSTQLNPHSLTLLSGFLAVISVN+VIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG
Sbjct: 205 GSTQLNPHSLTLLSGFLAVISVNVVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 264

Query: 63  KADDPSQAQNKKEE 77
           KAD PSQAQNKKEE
Sbjct: 265 KADGPSQAQNKKEE 278

[Close]
BLAST of Cla009867 vs. NCBI nr
Match: gi|659077983|ref|XP_008439487.1| (PREDICTED: uncharacterized protein LOC103484273 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 6.3e-29
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GST+LNPHSLTLLSGFLAVISVN+VI IYIIMAMKEPSSKHEPDP FLAEAKASINQSTG
Sbjct: 33  GSTRLNPHSLTLLSGFLAVISVNVVIVIYIIMAMKEPSSKHEPDPAFLAEAKASINQSTG 92

Query: 63  KADDPSQAQNKKEE 77
           KAD PS+A NKKEE
Sbjct: 93  KADGPSEAHNKKEE 106

[Close]
BLAST of Cla009867 vs. NCBI nr
Match: gi|470120994|ref|XP_004296570.1| (PREDICTED: uncharacterized protein LOC101295033 [Fragaria vesca subsp. vesca])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-21
Identity = 55/73 (75.34%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           GS+ L+PH+LTLLSGFLAV+SVNIVIA YI MAMKEPS KHEPDP FLAEAKASINQST 
Sbjct: 33  GSSDLSPHTLTLLSGFLAVVSVNIVIAFYIYMAMKEPSDKHEPDPAFLAEAKASINQSTA 92

Query: 63  KADDPSQAQNKKE 76
            A   SQ+  K E
Sbjct: 93  DAGSSSQSSKKNE 105

[Close]
BLAST of Cla009867 vs. NCBI nr
Match: gi|743877779|ref|XP_011035493.1| (PREDICTED: uncharacterized protein LOC105133272 [Populus euphratica])

HSP 1 Score: 109.4 bits (272), Expect = 2.8e-21
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 1 

Query: 3   GSTQLNPHSLTLLSGFLAVISVNIVIAIYIIMAMKEPSSKHEPDPTFLAEAKASINQSTG 62
           G T+L+PHSLTLLSGF+AVISVNIVIA YI MA+KEPS KHEPDP FLAEAKAS++QS G
Sbjct: 33  GITKLSPHSLTLLSGFVAVISVNIVIAFYIYMAIKEPSDKHEPDPAFLAEAKASVSQSAG 92

Query: 63  KADDPSQAQNKKE 76
           K  D SQ+  K+E
Sbjct: 93  KVGDSSQSLKKEE 105

The following BLAST results are available for this feature:
BLAST of Cla009867 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPB7_CUCSA1.6e-3197.30Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526400 PE=3 SV=1[more]
F6HFT6_VITVI7.5e-2172.97Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Vitis vinife... [more]
B9MUL9_POPTR9.8e-2171.23Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Populus tric... [more]
M5WID5_PRUPE1.7e-2071.23Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Prunus persi... [more]
W9QP27_9ROSA1.7e-2071.23Vacuolar ATPase assembly integral membrane protein VMA21 homolog OS=Morus notabi... [more]
BLAST of Cla009867 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433513|ref|XP_004134542.1|2.3e-3197.30PREDICTED: uncharacterized protein LOC101206493 [Cucumis sativus][more]
gi|700194302|gb|KGN49506.1|2.3e-3197.30hypothetical protein Csa_6G526400 [Cucumis sativus][more]
gi|659077983|ref|XP_008439487.1|6.3e-2990.54PREDICTED: uncharacterized protein LOC103484273 [Cucumis melo][more]
gi|470120994|ref|XP_004296570.1|1.7e-2175.34PREDICTED: uncharacterized protein LOC101295033 [Fragaria vesca subsp. vesca][more]
gi|743877779|ref|XP_011035493.1|2.8e-2173.97PREDICTED: uncharacterized protein LOC105133272 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR019013Vma21
Vocabulary: Biological Process
TermDefinition
GO:0070072vacuolar proton-transporting V-type ATPase complex assembly
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0030127 COPII vesicle coat
cellular_component GO:0033116 endoplasmic reticulum-Golgi intermediate compartment membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003677 DNA binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU37571watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU54690watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla009867Cla009867.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU37571WMU37571transcribed_cluster
WMU54690WMU54690transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PANTHERPTHR31792FAMILY NOT NAMEDcoord: 3..58
score: 7.1
IPR019013Vacuolar ATPase assembly integral membrane protein Vma21PFAMPF09446VMA21coord: 4..36
score: 3.