CmoCh03G010900 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G010900
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 8373417 .. 8373974 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTCCTCTAGCTCCAACTACTGTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCAGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTCACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGTAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

mRNA sequence

ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTCCTCTAGCTCCAACTACTGTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCAGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTCACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGTAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

Coding sequence (CDS)

ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTCCTCTAGCTCCAACTACTGTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCAGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTCACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTCGGTTCTCGATTCGGCGAGTAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

Homology

[Close]

BLAST of CmoCh03G010900 vs. TrEMBL
Match: A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-41
Identity = 117/177 (66.10%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERPLAPTTVAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP + PL+P  VAV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME- 120

Query: 121 TKKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAI 176
            + +KK +R V           E EESV++   EEEEEEE G      +ADALLEAI
Sbjct: 121 -RNQKKAEREVR---------VEEEESVHK--VEEEEEEEIG------IADALLEAI 148

[Close]

BLAST of CmoCh03G010900 vs. TrEMBL
Match: A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12
Identity = 67/184 (36.41%), Postives = 95/184 (51.63%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERPLAPTTVAVSAAADFSDVGIEDPDLI 60
           M  P++ +  A+N S  P   +S S  DP P      PTT    A +      IEDPD++
Sbjct: 1   MENPKSDQAPAENCS-DPAPSNSNSGDDPSP------PTT----AESWEEKPEIEDPDIL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSIVSEMEST 120
           R+PKRRK+CPSAL+  D + S SN  F F+FD+KF G S  E+TPKFGSFN +      +
Sbjct: 61  RQPKRRKNCPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGS 120

Query: 121 KKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAIEGGG 180
            K+ K + +VL                       EEE+E+ + +++E  D ++E    G 
Sbjct: 121 TKDPKSEETVL-----------------------EEEDEDDDDDDEEKPDVVVEKNSMGL 147

Query: 181 LESV 184
           L SV
Sbjct: 181 LSSV 147

[Close]

BLAST of CmoCh03G010900 vs. TrEMBL
Match: W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 58/138 (42.03%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 15  SLSPLSRSSFSAADPDPGERPLAPTTVAVSAAADFSDVGIEDPDLIREPKRRKHCPSALE 74
           S + LS  S ++ +PD G+    PT      AAD+     EDPD  REPK+R+ CP ALE
Sbjct: 11  SQTTLSLPSSASENPDSGDVSQTPT------AADYPVS--EDPDSTREPKKRRCCPKALE 70

Query: 75  NLDELTSASNSS---FGFTFDTKFCGVSAEITPKFGSFNSIVS-EMESTKKEKKEQRSVL 134
            ++EL    NS+   F F+FDTKF G S EITPKFGSFN +VS   ++T+  KKE     
Sbjct: 71  QVEELLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKD 130

Query: 135 DSASKTRGDEEREESVNR 149
            + + T    E  E   +
Sbjct: 131 QTQNPTGSSSETVEETKQ 140

[Close]

BLAST of CmoCh03G010900 vs. TrEMBL
Match: M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.5e-11
Identity = 66/184 (35.87%), Postives = 95/184 (51.63%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERPLAPTTVAVSAAADFSDVGIEDPDLI 60
           M  P++ +  A+N S  P   +S S+ DP        P+T A S         IEDPD++
Sbjct: 1   MENPKSDQAPAENCS-DPAPSNSNSSDDP-------LPSTTAESWE---EKPEIEDPDIL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSIVSEMEST 120
           R+PKRRK+CPSAL+  D + S SN  F F+FD+KF G S  E+TPKFGSFN +      +
Sbjct: 61  RQPKRRKNCPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGS 120

Query: 121 KKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAIEGGG 180
            K+ K + +VL                       EEE+E+ + +++E  D ++E    G 
Sbjct: 121 TKDPKSEETVL-----------------------EEEDEDDDDDDEEKPDVVVEKNSMGL 147

Query: 181 LESV 184
           L SV
Sbjct: 181 LSSV 147

[Close]

BLAST of CmoCh03G010900 vs. TrEMBL
Match: K4D2Y7_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.5e-09
Identity = 58/159 (36.48%), Postives = 86/159 (54.09%), Query Frame = 1


Query: 25  SAADPDP-----GERPLAPTTVAVSAAADFSDVGIEDPDLIREPKRRKHCPSALENLDEL 84
           + +DP P     G+ P  PTT    A +      IEDPD+IR+ KRRK+CPSAL+  D +
Sbjct: 13  NCSDPAPSNSNSGDDPSPPTT----AESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 72

Query: 85  TSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSIVSEMESTKKEKKEQRSVLDSASKTRG 144
            S SN  F F+FD+KF G S  E+TPKFGSFN +      + K+ K + +VL+       
Sbjct: 73  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLE------- 132

Query: 145 DEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAIEG 178
                        E+E+EEE+ +   ++ +  LL +++G
Sbjct: 133 ------------VEDEDEEEKPDVVVEKNSLGLLSSVDG 145

[Close]

BLAST of CmoCh03G010900 vs. NCBI nr
Match: gi|778694676|ref|XP_011653847.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 7.8e-41
Identity = 117/177 (66.10%), Postives = 127/177 (71.75%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERPLAPTTVAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP + PL+P  VAV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME- 120

Query: 121 TKKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAI 176
            + +KK +R V           E EESV++   EEEEEEE G      +ADALLEAI
Sbjct: 121 -RNQKKAEREVR---------VEEEESVHK--VEEEEEEEIG------IADALLEAI 148

[Close]

BLAST of CmoCh03G010900 vs. NCBI nr
Match: gi|778694679|ref|XP_011653849.1| (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 3.0e-40
Identity = 110/161 (68.32%), Postives = 119/161 (73.91%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERPLAPTTVAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP + PL+P  VAV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPAAVDPDPVDPPLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME- 120

Query: 121 TKKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEE 160
            + +KK +R V           E EESV++  EEEEEEEEE
Sbjct: 121 -RNQKKAEREV---------RVEEEESVHKVEEEEEEEEEE 140

[Close]

BLAST of CmoCh03G010900 vs. NCBI nr
Match: gi|659111461|ref|XP_008455747.1| (PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-like [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39
Identity = 114/178 (64.04%), Postives = 128/178 (71.91%), Query Frame = 1


Query: 1   MAEPQTRENFAQNPSLSPLSRSSFS--AADPDPGERPLAPTTVAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSRSSFS  A DPDP + PL+P  VA           ++DPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRSSFSPPAVDPDPVDPPLSPPAVAP----------LQDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMES 120
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME 
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME- 120

Query: 121 TKKEKKEQRSVLDSASKTRGDEEREESVNRGREEEEEEEEEGEGEEKEVADALLEAIE 177
            + +KKE+R V           E EE+V++   EEEEEEE G      +ADALL+AI+
Sbjct: 121 -RNQKKEEREVR---------VEEEETVHK--VEEEEEEEIG------IADALLKAIK 149

[Close]

BLAST of CmoCh03G010900 vs. NCBI nr
Match: gi|970056961|ref|XP_015055124.1| (PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii])

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-12
Identity = 51/121 (42.15%), Postives = 71/121 (58.68%), Query Frame = 1


Query: 25  SAADPDP-----GERPLAPTTVAVSAAADFSDVGIEDPDLIREPKRRKHCPSALENLDEL 84
           + +DP P     G+ P  PTT    A +      IEDPD+IR+ KRRK+CPSAL+  D +
Sbjct: 13  NCSDPAPSNSNSGDDPSPPTT----AESWEEKPEIEDPDIIRQAKRRKNCPSALDKFDSV 72

Query: 85  TSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSIVSEMESTKKEKKEQRSVLDSASKTRG 140
            S SN  F F+FD+KF G S  E+TPKFGSFN +      + K+ K + +VL+   + + 
Sbjct: 73  NSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV---KPGSTKDPKSEETVLEEEDEEKP 126

[Close]

BLAST of CmoCh03G010900 vs. NCBI nr
Match: gi|703155556|ref|XP_010111232.1| (hypothetical protein L484_027885 [Morus notabilis])

HSP 1 Score: 77.4 bits (189), Expect = 2.9e-11
Identity = 58/138 (42.03%), Postives = 77/138 (55.80%), Query Frame = 1


Query: 15  SLSPLSRSSFSAADPDPGERPLAPTTVAVSAAADFSDVGIEDPDLIREPKRRKHCPSALE 74
           S + LS  S ++ +PD G+    PT      AAD+     EDPD  REPK+R+ CP ALE
Sbjct: 11  SQTTLSLPSSASENPDSGDVSQTPT------AADYPVS--EDPDSTREPKKRRCCPKALE 70

Query: 75  NLDELTSASNSS---FGFTFDTKFCGVSAEITPKFGSFNSIVS-EMESTKKEKKEQRSVL 134
            ++EL    NS+   F F+FDTKF G S EITPKFGSFN +VS   ++T+  KKE     
Sbjct: 71  QVEELLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVSNSAQNTRNCKKEAEGKD 130

Query: 135 DSASKTRGDEEREESVNR 149
            + + T    E  E   +
Sbjct: 131 QTQNPTGSSSETVEETKQ 140

The following BLAST results are available for this feature:

BLAST of CmoCh03G010900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G010900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L245_CUCSA	5.5e-41	66.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G420180 PE=4 SV=1	[more]
A0A0V0HAK9_SOLCH	9.1e-12	36.41	Putative ovule protein OS=Solanum chacoense PE=4 SV=1	[more]
W9S7C4_9ROSA	2.0e-11	42.03	Uncharacterized protein OS=Morus notabilis GN=L484_027885 PE=4 SV=1	[more]
M1CPV9_SOLTU	4.5e-11	35.87	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028103 PE=4 SV=1	[more]
K4D2Y7_SOLLC	2.5e-09	36.48	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmoCh03G010900 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G010900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694676\|ref\|XP_011653847.1\|	7.8e-41	66.10	PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus]	[more]
gi\|778694679\|ref\|XP_011653849.1\|	3.0e-40	68.32	PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus]	[more]
gi\|659111461\|ref\|XP_008455747.1\|	1.1e-39	64.04	PREDICTED: X-linked retinitis pigmentosa GTPase regulator-interacting protein 1-...	[more]
gi\|970056961\|ref\|XP_015055124.1\|	3.4e-12	42.15	PREDICTED: uncharacterized protein LOC107001678 [Solanum pennellii]	[more]
gi\|703155556\|ref\|XP_010111232.1\|	2.9e-11	42.03	hypothetical protein L484_027885 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G010900.1	CmoCh03G010900.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 146..166 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G010900	CmaCh03G001550	Cucurbita maxima (Rimu)	cmacmoB656
CmoCh03G010900	Carg28071	Silver-seed gourd	carcmoB1195

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G010900	Silver-seed gourd	carcmoB0336
CmoCh03G010900	Silver-seed gourd	carcmoB1095
CmoCh03G010900	Watermelon (97103) v2	cmowmbB642
CmoCh03G010900	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G010900	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G010900	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G010900	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G010900	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G010900	Melon (DHL92) v3.5.1	cmomeB598
CmoCh03G010900	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G010900	Watermelon (97103) v1	cmowmB620
CmoCh03G010900	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G010900	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G010900	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G010900	Cucumber (Gy14) v2	cgybcmoB811