Carg28071 (gene) Silver-seed gourd

Overview
NameCarg28071
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSoluble starch synthase
LocationCucurbita_argyrosperma_scaffold_169 : 321821 .. 322372 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTTCTCTAGTTCCAACTACTCTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTTACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTTGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

mRNA sequence

ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTTCTCTAGTTCCAACTACTCTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTTACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTTGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

Coding sequence (CDS)

ATGGCAGAGCCTCAAACTCGCGAAAATTTCGCCCAAAATCCATCACTTTCACCACTCTCCCGCTCCTCTTTCTCCGCCGCCGATCCAGATCCCGGCGAACGTTCTCTAGTTCCAACTACTCTCGCCGTCTCGGCCGCCGCGGACTTCAGTGATGTAGGCATCGAGGATCCCGATTTGATTCGAGAACCTAAACGGCGGAAGCACTGTCCGTCGGCTCTGGAGAATCTCGACGAGTTGACGTCGGCGTCGAACTCCAGCTTTGGCTTTACTTTCGACACCAAATTTTGCGGAGTCTCAGCCGAGATCACTCCGAAATTCGGATCGTTCAACTCGATCGTTTCGGAAATGGAGTCGACGAAGAAGGAGAAGAAAGAGCAGAGGTTGGTTCTCGATTCGGCGAGCAAAACGAGAGGAGACGAAGAAAGAGAAGAGTCCGTAAATCGAGGTACAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGTCGCCGATGCGTTGCTAGAAGCAATTGAAGGAGGAGGTCTGGAATCTGTAGCGGATTGA

Protein sequence

MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEMESTKKEKKEQRLVLDSASKTRGDEEREESVNRGTEEEEEEEEEEEEKEVADALLEAIEGGGLESVAD
Homology
[Close]
BLAST of Carg28071 vs. NCBI nr
Match: XP_011653847.1 (PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus] >KGN54677.1 hypothetical protein Csa_4G420180 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 81/119 (68.07%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSR--SSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSR                L P  +AV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRXXXXXXXXXXXXXXXXLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEME 118
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME 109

[Close]
BLAST of Carg28071 vs. NCBI nr
Match: XP_011653849.1 (PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 1.8e-30
Identity = 81/119 (68.07%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSR--SSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSR                L P  +AV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRXXXXXXXXXXXXXXXXLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEME 118
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME 109

[Close]
BLAST of Carg28071 vs. NCBI nr
Match: EXC30710.1 (hypothetical protein L484_027885 [Morus notabilis])

HSP 1 Score: 84.7 bits (208), Expect = 3.5e-13
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 15  SLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLIREPKRRKHCPSALE 74
           S + LS  S ++ +PD G+ S  PT      AAD+     EDPD  REPK+R+ CP ALE
Sbjct: 11  SQTTLSLPSSASENPDSGDVSQTPT------AADYP--VSEDPDSTREPKKRRCCPKALE 70

Query: 75  NLDELTSASNSS---FGFTFDTKFCGVSAEITPKFGSFNSIVS 115
            ++EL    NS+   F F+FDTKF G S EITPKFGSFN +VS
Sbjct: 71  QVEELLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVS 105

[Close]
BLAST of Carg28071 vs. NCBI nr
Match: XP_016495977.1 (PREDICTED: uncharacterized protein LOC107814989 [Nicotiana tabacum])

HSP 1 Score: 80.1 bits (196), Expect = 8.6e-12
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60
           M +P+T ++ A N             + P PG    +P   A  +  +  D   EDPD +
Sbjct: 1   MEDPKTDQSPAAN------------CSTPAPGTVDDLPPQAATESCEEKPDK--EDPDSL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSI 113
           R+PKRRK+CP+AL+  D + SA+N  F F+FD+KF G S  E+TPKFGSFN +
Sbjct: 61  RQPKRRKNCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRV 99

[Close]
BLAST of Carg28071 vs. NCBI nr
Match: OIT38761.1 (hypothetical protein A4A49_21018 [Nicotiana attenuata])

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-11
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60
           M EP+T ++ A N S+            P P      P   A  +  +  D   EDPD +
Sbjct: 1   MEEPKTDQSSAANCSI------------PAPHTVDDQPPQAATESCEEKPDK--EDPDSL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSI 113
           R+PKRRK+CP+AL+  D + SA+N  F F+FD+KF G S  E+TPKFGSFN +
Sbjct: 61  RQPKRRKNCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRV 99

[Close]
BLAST of Carg28071 vs. TrEMBL
Match: tr|A0A0A0L245|A0A0A0L245_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.2e-30
Identity = 81/119 (68.07%), Postives = 84/119 (70.59%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSR--SSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPD 60
           MAEPQTREN AQN SLSPLSR                L P  +AV          +EDPD
Sbjct: 1   MAEPQTRENLAQNLSLSPLSRXXXXXXXXXXXXXXXXLSPPAVAV----------LEDPD 60

Query: 61  LIREPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSAEITPKFGSFNSIVSEME 118
           LIREPKRRKHCP+ALENLDELTSASNSSF FTFDTKFCG SAEITPKFGSFNSI  EME
Sbjct: 61  LIREPKRRKHCPTALENLDELTSASNSSFAFTFDTKFCGFSAEITPKFGSFNSIAPEME 109

[Close]
BLAST of Carg28071 vs. TrEMBL
Match: tr|W9S7C4|W9S7C4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027885 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 52/103 (50.49%), Postives = 65/103 (63.11%), Query Frame = 0 

Query: 15  SLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLIREPKRRKHCPSALE 74
           S + LS  S ++ +PD G+ S  PT      AAD+     EDPD  REPK+R+ CP ALE
Sbjct: 11  SQTTLSLPSSASENPDSGDVSQTPT------AADYP--VSEDPDSTREPKKRRCCPKALE 70

Query: 75  NLDELTSASNSS---FGFTFDTKFCGVSAEITPKFGSFNSIVS 115
            ++EL    NS+   F F+FDTKF G S EITPKFGSFN +VS
Sbjct: 71  QVEELLIGPNSNPNLFSFSFDTKFSGCSPEITPKFGSFNLVVS 105

[Close]
BLAST of Carg28071 vs. TrEMBL
Match: tr|A0A0V0HAK9|A0A0V0HAK9_SOLCH (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.7e-13
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60
           M  P++ +  A+N S  P   +S S  DP P      PTT    A +      IEDPD++
Sbjct: 1   MENPKSDQAPAENCS-DPAPSNSNSGDDPSP------PTT----AESWEEKPEIEDPDIL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSI 113
           R+PKRRK+CPSAL+  D + S SN  F F+FD+KF G S  E+TPKFGSFN +
Sbjct: 61  RQPKRRKNCPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV 102

[Close]
BLAST of Carg28071 vs. TrEMBL
Match: tr|M1CPV9|M1CPV9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 51/113 (45.13%), Postives = 69/113 (61.06%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60
           M  P++ +  A+N S  P   +S S+ DP       +P+T A S         IEDPD++
Sbjct: 1   MENPKSDQAPAENCS-DPAPSNSNSSDDP-------LPSTTAESWE---EKPEIEDPDIL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSI 113
           R+PKRRK+CPSAL+  D + S SN  F F+FD+KF G S  E+TPKFGSFN +
Sbjct: 61  RQPKRRKNCPSALDKFDSVNSGSNFGFSFSFDSKFSGCSTPEVTPKFGSFNRV 102

[Close]
BLAST of Carg28071 vs. TrEMBL
Match: tr|A0A1S4C4A0|A0A1S4C4A0_TOBAC (uncharacterized protein LOC107814989 OS=Nicotiana tabacum OX=4097 GN=LOC107814989 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = 0 

Query: 1   MAEPQTRENFAQNPSLSPLSRSSFSAADPDPGERSLVPTTLAVSAAADFSDVGIEDPDLI 60
           M +P+T ++ A N             + P PG    +P   A  +  +  D   EDPD +
Sbjct: 1   MEDPKTDQSPAAN------------CSTPAPGTVDDLPPQAATESCEEKPDK--EDPDSL 60

Query: 61  REPKRRKHCPSALENLDELTSASNSSFGFTFDTKFCGVSA-EITPKFGSFNSI 113
           R+PKRRK+CP+AL+  D + SA+N  F F+FD+KF G S  E+TPKFGSFN +
Sbjct: 61  RQPKRRKNCPTALDKFDSVNSATNLGFSFSFDSKFSGCSTPEVTPKFGSFNRV 99

The following BLAST results are available for this feature:
BLAST of Carg28071 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011653847.11.8e-3068.07PREDICTED: uncharacterized protein LOC105435263 isoform X1 [Cucumis sativus] >KG... [more]
XP_011653849.11.8e-3068.07PREDICTED: uncharacterized protein LOC105435263 isoform X2 [Cucumis sativus][more]
EXC30710.13.5e-1350.49hypothetical protein L484_027885 [Morus notabilis][more]
XP_016495977.18.6e-1240.71PREDICTED: uncharacterized protein LOC107814989 [Nicotiana tabacum][more]
OIT38761.11.9e-1141.59hypothetical protein A4A49_21018 [Nicotiana attenuata][more]
BLAST of Carg28071 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg28071 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg28071 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0L245|A0A0A0L245_CUCSA1.2e-3068.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420180 PE=4 SV=1[more]
tr|W9S7C4|W9S7C4_9ROSA2.3e-1350.49Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_027885 PE=4 SV=1[more]
tr|A0A0V0HAK9|A0A0V0HAK9_SOLCH6.7e-1346.02Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
tr|M1CPV9|M1CPV9_SOLTU2.0e-1245.13Uncharacterized protein OS=Solanum tuberosum OX=4113 PE=4 SV=1[more]
tr|A0A1S4C4A0|A0A1S4C4A0_TOBAC5.7e-1240.71uncharacterized protein LOC107814989 OS=Nicotiana tabacum OX=4097 GN=LOC10781498... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg28071-RACarg28071-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 140..172
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 146..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..145

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg28071CmaCh03G001550Cucurbita maxima (Rimu)carcmaB1225
Carg28071CmoCh03G010900Cucurbita moschata (Rifu)carcmoB1195
Carg28071Cp4.1LG10g10620Cucurbita pepo (Zucchini)carcpeB1234
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None