CmoCh03G007150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G007150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transducin/WD40 repeat-like superfamily protein
Location	Cmo_Chr03 : 6188599 .. 6188964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCTTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCGGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGACGATGATATGGCTGTGTCGGTACCGTTGCCGGTCAGGTAA

mRNA sequence

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCTTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCGGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGACGATGATATGGCTGTGTCGGTACCGTTGCCGGTCAGGTAA

Coding sequence (CDS)

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGTGAGGCCGTTTTTCGCTTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCTTTAGACGGCGGCAGTCATATCAAAACGGCGACCACCACCACAGTGAAGCGGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACCAGATAATTCTCGACCGTGGATCAGTGGACGCCGACGATGATATGGCTGTGTCGGTACCGTTGCCGGTCAGGTAA

Homology

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BLAST of CmoCh03G007150 vs. TrEMBL
Match: A0A0A0KGN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 4.7e-41
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVF-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSV-D 120
           TNHH +AGA FQDDV  RRR SY N DHHHSEAVADCIEFIK KAYSDD++ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 ADDDMAVSVPLPVR 122
           ADDDM VSVP+PVR
Sbjct: 121 ADDDMTVSVPVPVR 134

[Close]

BLAST of CmoCh03G007150 vs. TrEMBL
Match: B9MXG5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 9.8e-15
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVFRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V ++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQIIL--DRGSVDADDDMAVSVPLPV 121
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of CmoCh03G007150 vs. TrEMBL
Match: A0A067D7T3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.8e-14
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 16  GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNH-HSAGAVFQDDVFRRRQSYQNG 75
           G +  N    PAMTL ER REAVFR IML ALSKAT   H+     +      R  Y   
Sbjct: 13  GSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAHVSRSYYNPA 72

Query: 76  DHHHSEAVADCIEFIKKKAYSDDQII---LDRGSVDADDDMAVSVPLP 120
           D HHSEAVADCIEFIKKKA +DD+      D  + D DD +++    P
Sbjct: 73  DPHHSEAVADCIEFIKKKALTDDEDYDHDNDNSASDTDDSISIDATNP 120

[Close]

BLAST of CmoCh03G007150 vs. TrEMBL
Match: A0A151TIL0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_013184 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-13
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 13 KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVFRRRQSYQ 72
          +L+ +  K++K P  MTL ER REAV R +ML ALSKAT +H  G        R  + Y 
Sbjct: 9  RLKSNSCKSNKPPSPMTLLERFREAVLRLMMLSALSKATTNHRDGE-------RHNRRYN 68

Query: 73 NGDH--HHSEAVADCIEFIKKKAYSD 97
          N  H  HHSEAVADCIEFIKKKA +D
Sbjct: 69 NSPHDPHHSEAVADCIEFIKKKAATD 87

[Close]

BLAST of CmoCh03G007150 vs. TrEMBL
Match: V4UP74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027456mg PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-13
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 13  KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA-------TNHHSAGAVFQDDVF 72
           +LR  + KN    PAMTL ER REAVFR IML ALSKA       T  H+     +    
Sbjct: 9   RLRSGNNKNKT--PAMTLLERFREAVFRLIMLSALSKAAAATTTTTTTHNNYHHHRHQAH 68

Query: 73  RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSV 117
             R  Y   D HHSEAVADCIEFIKKKA +DD+   D  +  +D D ++S+
Sbjct: 69  VSRSYYNPADPHHSEAVADCIEFIKKKALTDDE-DYDHNNSASDTDDSISI 116

[Close]

BLAST of CmoCh03G007150 vs. NCBI nr
Match: gi|700193706|gb|KGN48910.1| (hypothetical protein Csa_6G505880 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 6.7e-41
Identity = 100/134 (74.63%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVF-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSV-D 120
           TNHH +AGA FQDDV  RRR SY N DHHHSEAVADCIEFIK KAYSDD++ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 ADDDMAVSVPLPVR 122
           ADDDM VSVP+PVR
Sbjct: 121 ADDDMTVSVPVPVR 134

[Close]

BLAST of CmoCh03G007150 vs. NCBI nr
Match: gi|566170839|ref|XP_006383111.1| (hypothetical protein POPTR_0005s11660g [Populus trichocarpa])

HSP 1 Score: 87.8 bits (216), Expect = 1.4e-14
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVFRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V ++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDQIIL--DRGSVDADDDMAVSVPLPV 121
           SEAVADCIEFIKK + +D + I      S   DD   +++P+PV
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPV 147

[Close]

BLAST of CmoCh03G007150 vs. NCBI nr
Match: gi|641818045|gb|KDO39059.1| (hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis])

HSP 1 Score: 86.3 bits (212), Expect = 4.1e-14
Identity = 52/108 (48.15%), Postives = 61/108 (56.48%), Query Frame = 1


Query: 16  GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNH-HSAGAVFQDDVFRRRQSYQNG 75
           G +  N    PAMTL ER REAVFR IML ALSKAT   H+     +      R  Y   
Sbjct: 13  GSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAHVSRSYYNPA 72

Query: 76  DHHHSEAVADCIEFIKKKAYSDDQII---LDRGSVDADDDMAVSVPLP 120
           D HHSEAVADCIEFIKKKA +DD+      D  + D DD +++    P
Sbjct: 73  DPHHSEAVADCIEFIKKKALTDDEDYDHDNDNSASDTDDSISIDATNP 120

[Close]

BLAST of CmoCh03G007150 vs. NCBI nr
Match: gi|1012355686|gb|KYP66873.1| (hypothetical protein KK1_013184 [Cajanus cajan])

HSP 1 Score: 83.2 bits (204), Expect = 3.5e-13
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 1


Query: 13 KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVFRRRQSYQ 72
          +L+ +  K++K P  MTL ER REAV R +ML ALSKAT +H  G        R  + Y 
Sbjct: 9  RLKSNSCKSNKPPSPMTLLERFREAVLRLMMLSALSKATTNHRDGE-------RHNRRYN 68

Query: 73 NGDH--HHSEAVADCIEFIKKKAYSD 97
          N  H  HHSEAVADCIEFIKKKA +D
Sbjct: 69 NSPHDPHHSEAVADCIEFIKKKAATD 87

[Close]

BLAST of CmoCh03G007150 vs. NCBI nr
Match: gi|641841020|gb|KDO59935.1| (hypothetical protein CISIN_1g047442mg, partial [Citrus sinensis])

HSP 1 Score: 81.6 bits (200), Expect = 1.0e-12
Identity = 53/111 (47.75%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 13  KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA-------TNHHSAGAVFQDDVF 72
           +LR  + KN    PAMTL ER REAVFR IML ALSKA       T  H+     +    
Sbjct: 9   RLRSGNNKNKT--PAMTLLERFREAVFRLIMLSALSKAAAATTTTTTTHNNYHHHRHQAH 68

Query: 73  RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDQIILDRGSVDADDDMAVSV 117
             R  Y   D HHSEAVADCIEFIKKKA +DD+   D  +  +D D ++S+
Sbjct: 69  VSRSYYNPADPHHSEAVADCIEFIKKKALTDDE-DYDHNNSASDTDDSISI 116

The following BLAST results are available for this feature:

BLAST of CmoCh03G007150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G007150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3_CUCSA	4.7e-41	74.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1	[more]
B9MXG5_POPTR	9.8e-15	50.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1	[more]
A0A067D7T3_CITSI	2.8e-14	48.15	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 S...	[more]
A0A151TIL0_CAJCA	2.4e-13	53.49	Uncharacterized protein OS=Cajanus cajan GN=KK1_013184 PE=4 SV=1	[more]
V4UP74_9ROSI	7.0e-13	47.75	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027456mg PE=4 SV=1	[more]

BLAST of CmoCh03G007150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G007150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193706\|gb\|KGN48910.1\|	6.7e-41	74.63	hypothetical protein Csa_6G505880 [Cucumis sativus]	[more]
gi\|566170839\|ref\|XP_006383111.1\|	1.4e-14	50.00	hypothetical protein POPTR_0005s11660g [Populus trichocarpa]	[more]
gi\|641818045\|gb\|KDO39059.1\|	4.1e-14	48.15	hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis]	[more]
gi\|1012355686\|gb\|KYP66873.1\|	3.5e-13	53.49	hypothetical protein KK1_013184 [Cajanus cajan]	[more]
gi\|641841020\|gb\|KDO59935.1\|	1.0e-12	47.75	hypothetical protein CISIN_1g047442mg, partial [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G007150.1	CmoCh03G007150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	FAMILY NOT NAMED	coord: 28..120 score: 2.5
None	No IPR available	PANTHER	PTHR35111:SF1	SUBFAMILY NOT NAMED	coord: 28..120 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G007150	Cucsa.043540	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G007150	CmaCh03G006890	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G007150	Cla014282	Watermelon (97103) v1	cmowmB623
CmoCh03G007150	Csa6G505880	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G007150	MELO3C007900	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G007150	ClCG01G020280	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G007150	CSPI06G31740	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G007150	Cp4.1LG10g00150	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G007150	MELO3C007900.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G007150	CsaV3_6G047070	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G007150	Cla97C01G019690	Watermelon (97103) v2	cmowmbB642
CmoCh03G007150	Bhi03G000645	Wax gourd	cmowgoB0781
CmoCh03G007150	CsGy6G031240	Cucumber (Gy14) v2	cgybcmoB811

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G007150	Silver-seed gourd	carcmoB0551
CmoCh03G007150	Silver-seed gourd	carcmoB0886
CmoCh03G007150	Silver-seed gourd	carcmoB1317
CmoCh03G007150	Cucumber (Chinese Long) v3	cmocucB0766
CmoCh03G007150	Cucumber (Chinese Long) v3	cmocucB0773
CmoCh03G007150	Watermelon (97103) v2	cmowmbB673
CmoCh03G007150	Cucurbita moschata (Rifu)	cmocmoB027
CmoCh03G007150	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G007150	Cucurbita maxima (Rimu)	cmacmoB057
CmoCh03G007150	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G007150	Wild cucumber (PI 183967)	cmocpiB655
CmoCh03G007150	Cucumber (Chinese Long) v2	cmocuB643
CmoCh03G007150	Melon (DHL92) v3.5.1	cmomeB584
CmoCh03G007150	Watermelon (Charleston Gray)	cmowcgB601
CmoCh03G007150	Watermelon (97103) v1	cmowmB610
CmoCh03G007150	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G007150	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G007150	Bottle gourd (USVL1VR-Ls)	cmolsiB608
CmoCh03G007150	Cucumber (Gy14) v2	cgybcmoB230
CmoCh03G007150	Cucumber (Gy14) v2	cgybcmoB385
CmoCh03G007150	Melon (DHL92) v3.6.1	cmomedB671