Cla014282 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014282
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 29669606 .. 29670004 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAAAAAACAAGACGAGTCCACCGAAAGACGAAGGCGCCGGCCAATCTCTGCCTCCGAAAGCCAAGAGGCGACGCCACGAAGAACAACAAGGCCGCGGCGGCCATGACTCTGTTTGAACGCCTCCGCGAGGCTGTTTTTCGTTTTATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGGCGGAGCCGCCTTCCAGGACGACGTCGTCGTTAGGCGGCGACACGCATACCCAAACGTCGACCACCACCACAGCGAAGCCGTCGCCGATTGCATCGAATTCATCAAGATGAAGGCGTATTCCGACGACGAAATAATTCTTGACCGTGGATCGGTGGACGTCGATGATGATATGGCGGTGTCGGTGCCGGTGCCGGTCAGGTAA

mRNA sequence

ATGGCCGAAAAAACAAGACGAGTCCACCGAAAGACGAAGGCGCCGGCCAATCTCTGCCTCCGAAAGCCAAGAGGCGACGCCACGAAGAACAACAAGGCCGCGGCGGCCATGACTCTGTTTGAACGCCTCCGCGAGGCTGTTTTTCGTTTTATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGGCGGAGCCGCCTTCCAGGACGACGTCGTCGTTAGGCGGCGACACGCATACCCAAACGTCGACCACCACCACAGCGAAGCCGTCGCCGATTGCATCGAATTCATCAAGATGAAGGCGTATTCCGACGACGAAATAATTCTTGACCGTGGATCGGTGGACGTCGATGATGATATGGCGGTGTCGGTGCCGGTGCCGGTCAGGTAA

Coding sequence (CDS)

ATGGCCGAAAAAACAAGACGAGTCCACCGAAAGACGAAGGCGCCGGCCAATCTCTGCCTCCGAAAGCCAAGAGGCGACGCCACGAAGAACAACAAGGCCGCGGCGGCCATGACTCTGTTTGAACGCCTCCGCGAGGCTGTTTTTCGTTTTATAATGCTATGTGCTCTCTCAAAGGCCACAAATCATCATCCCGCCGGCGGAGCCGCCTTCCAGGACGACGTCGTCGTTAGGCGGCGACACGCATACCCAAACGTCGACCACCACCACAGCGAAGCCGTCGCCGATTGCATCGAATTCATCAAGATGAAGGCGTATTCCGACGACGAAATAATTCTTGACCGTGGATCGGTGGACGTCGATGATGATATGGCGGTGTCGGTGCCGGTGCCGGTCAGGTAA

Protein sequence

MAEKTRRVHRKTKAPANLCLRKPRGDATKNNKAAAAMTLFERLREAVFRFIMLCALSKATNHHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILDRGSVDVDDDMAVSVPVPVR

Homology

[Close]

BLAST of Cla014282 vs. TrEMBL
Match: A0A0A0KGN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.3e-56
Identity = 114/134 (85.07%), Postives = 118/134 (88.06%), Query Frame = 1


Query: 1   MAEKTRRVHRKTKAPANLCLRKPR-GDATKNNKAAAAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV RK K P NLCLRKPR GDA K  K  + MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILDRGSV-D 120
           TNHHPA GA FQDDVVVRRRH+YPNVDHHHSEAVADCIEFIKMKAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 VDDDMAVSVPVPVR 133
            DDDM VSVPVPVR
Sbjct: 121 ADDDMTVSVPVPVR 134

[Close]

BLAST of Cla014282 vs. TrEMBL
Match: W9SCS0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026688 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.2e-15
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 3   EKTRRVHRKTKAPANLCLRKPRGDA-TKNNKAAAAMTLFERLREAVFRFIMLCALSKATN 62
           EK R    K     N C+ + R ++ T   K    MTL ER REAVFR IM  ALSK+ N
Sbjct: 2   EKPRGGSPKRVMKTNFCIPRLRNNSSTTKTKGITPMTLLERFREAVFRLIMFSALSKSAN 61

Query: 63  HHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILD-RGSVDVD 122
           H  +G           RRH +P+ DH HSEAVA+CIEFIK KA  D+  +   R SV+  
Sbjct: 62  HPGSGDV---------RRHYHPSNDHRHSEAVAECIEFIKKKAGPDESRVSSARSSVNSA 121

Query: 123 DDMAVSVPVPV 132
            D  V + VP+
Sbjct: 122 ADQGV-IHVPI 122

[Close]

BLAST of Cla014282 vs. TrEMBL
Match: A0A067D7T3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-14
Identity = 56/118 (47.46%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 17  NLCLRKPRGDATKNNK-AAAAMTLFERLREAVFRFIMLCALSKATNHHPAGGAAFQDDVV 76
           NLC+ + R  +  NNK    AMTL ER REAVFR IML ALSKAT          +    
Sbjct: 4   NLCIPRLRSGSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAH 63

Query: 77  VRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEII---LDRGSVDVDDDMAVSVPVP 131
           V R +  P  D HHSEAVADCIEFIK KA +DDE      D  + D DD +++    P
Sbjct: 64  VSRSYYNP-ADPHHSEAVADCIEFIKKKALTDDEDYDHDNDNSASDTDDSISIDATNP 120

[Close]

BLAST of Cla014282 vs. TrEMBL
Match: B9MXG5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-14
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 8   VHRKTKAPANLCLRKPRGDATKN--NKAAAAMTLFERLREAVFRFIMLCALSKATNHHPA 67
           ++   +  ++LC+ + R + T    N   + MTL ER R+AVFR +ML ALSKAT H+ A
Sbjct: 23  INSPKRMKSHLCIPRLRVNTTCTIKNHRLSPMTLLERFRQAVFRLMMLSALSKAT-HNAA 82

Query: 68  GGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIIL--DRGSVDVDDDM 127
           G +   D  V+++R +Y   D HHSEAVADCIEFIK  + +D E I      S   DD  
Sbjct: 83  GSSP--DHHVMKKRSSYYPADPHHSEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTG 142

Query: 128 AVSVPVPV 132
            +++PVPV
Sbjct: 143 EMAMPVPV 147

[Close]

BLAST of Cla014282 vs. TrEMBL
Match: A0A061DFB2_THECC (Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_000214 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.3e-14
Identity = 57/130 (43.85%), Postives = 71/130 (54.62%), Query Frame = 1


Query: 1   MAEKTRRVHRKTKAPANLCLRKPRGDATKNNKAAAAMTLFERLREAVFRFIMLCALSKAT 60
           M +KTR   +K K+ + LC+  PR   +  NK  + MTL ER REAV R IML AL+K +
Sbjct: 255 MEKKTRGSLKKMKS-STLCM--PRFKGSNKNKRLSPMTLLERFREAVLRLIMLSALTKTS 314

Query: 61  NHHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILDRGSVDVD 120
           +HH     A         R  YP  D HHSEAVADCIEFIK KA   +       S ++D
Sbjct: 315 HHHTGSSTA--------PRKYYP-ADAHHSEAVADCIEFIKKKASRVENRDSSASSSNMD 372

Query: 121 DDMAVSVPVP 131
               V +PVP
Sbjct: 375 ATGEVVMPVP 372

[Close]

BLAST of Cla014282 vs. NCBI nr
Match: gi|700193706|gb|KGN48910.1| (hypothetical protein Csa_6G505880 [Cucumis sativus])

HSP 1 Score: 225.7 bits (574), Expect = 4.7e-56
Identity = 114/134 (85.07%), Postives = 118/134 (88.06%), Query Frame = 1


Query: 1   MAEKTRRVHRKTKAPANLCLRKPR-GDATKNNKAAAAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRV RK K P NLCLRKPR GDA K  K  + MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILDRGSV-D 120
           TNHHPA GA FQDDVVVRRRH+YPNVDHHHSEAVADCIEFIKMKAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

Query: 121 VDDDMAVSVPVPVR 133
            DDDM VSVPVPVR
Sbjct: 121 ADDDMTVSVPVPVR 134

[Close]

BLAST of Cla014282 vs. NCBI nr
Match: gi|703163482|ref|XP_010113356.1| (hypothetical protein L484_026688 [Morus notabilis])

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 57/131 (43.51%), Postives = 71/131 (54.20%), Query Frame = 1


Query: 3   EKTRRVHRKTKAPANLCLRKPRGDA-TKNNKAAAAMTLFERLREAVFRFIMLCALSKATN 62
           EK R    K     N C+ + R ++ T   K    MTL ER REAVFR IM  ALSK+ N
Sbjct: 2   EKPRGGSPKRVMKTNFCIPRLRNNSSTTKTKGITPMTLLERFREAVFRLIMFSALSKSAN 61

Query: 63  HHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILD-RGSVDVD 122
           H  +G           RRH +P+ DH HSEAVA+CIEFIK KA  D+  +   R SV+  
Sbjct: 62  HPGSGDV---------RRHYHPSNDHRHSEAVAECIEFIKKKAGPDESRVSSARSSVNSA 121

Query: 123 DDMAVSVPVPV 132
            D  V + VP+
Sbjct: 122 ADQGV-IHVPI 122

[Close]

BLAST of Cla014282 vs. NCBI nr
Match: gi|641818045|gb|KDO39059.1| (hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis])

HSP 1 Score: 87.4 bits (215), Expect = 2.0e-14
Identity = 56/118 (47.46%), Postives = 66/118 (55.93%), Query Frame = 1


Query: 17  NLCLRKPRGDATKNNK-AAAAMTLFERLREAVFRFIMLCALSKATNHHPAGGAAFQDDVV 76
           NLC+ + R  +  NNK    AMTL ER REAVFR IML ALSKAT          +    
Sbjct: 4   NLCIPRLRSGSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAH 63

Query: 77  VRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEII---LDRGSVDVDDDMAVSVPVP 131
           V R +  P  D HHSEAVADCIEFIK KA +DDE      D  + D DD +++    P
Sbjct: 64  VSRSYYNP-ADPHHSEAVADCIEFIKKKALTDDEDYDHDNDNSASDTDDSISIDATNP 120

[Close]

BLAST of Cla014282 vs. NCBI nr
Match: gi|566170839|ref|XP_006383111.1| (hypothetical protein POPTR_0005s11660g [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 8   VHRKTKAPANLCLRKPRGDATKN--NKAAAAMTLFERLREAVFRFIMLCALSKATNHHPA 67
           ++   +  ++LC+ + R + T    N   + MTL ER R+AVFR +ML ALSKAT H+ A
Sbjct: 23  INSPKRMKSHLCIPRLRVNTTCTIKNHRLSPMTLLERFRQAVFRLMMLSALSKAT-HNAA 82

Query: 68  GGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIIL--DRGSVDVDDDM 127
           G +   D  V+++R +Y   D HHSEAVADCIEFIK  + +D E I      S   DD  
Sbjct: 83  GSSP--DHHVMKKRSSYYPADPHHSEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTG 142

Query: 128 AVSVPVPV 132
            +++PVPV
Sbjct: 143 EMAMPVPV 147

[Close]

BLAST of Cla014282 vs. NCBI nr
Match: gi|1009144161|ref|XP_015889648.1| (PREDICTED: uncharacterized protein LOC107424376 [Ziziphus jujuba])

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-14
Identity = 57/133 (42.86%), Postives = 71/133 (53.38%), Query Frame = 1


Query: 3   EKTRRVHRKTKAPANLCLRKPRGDATKNNK----AAAAMTLFERLREAVFRFIMLCALSK 62
           EK R   +K     N+C+ + R ++  NNK      + MTL ER REAVFR IML ALSK
Sbjct: 5   EKPRESPKKVMK-TNMCIPRLRSNSCSNNKNRGGLLSPMTLLERFREAVFRLIMLSALSK 64

Query: 63  ATNHHPAGGAAFQDDVVVRRRHAYPNVDHHHSEAVADCIEFIKMKAYSDDEIILDRGSVD 122
           AT +  +G A    D   R+ H Y N D  HSEAVADCIEFIK  A   +       S  
Sbjct: 65  ATTNVQSGSA----DYAQRQYHYYSN-DPRHSEAVADCIEFIKKTAVPYENRDSSATSTS 124

Query: 123 VDDDMAVSVPVPV 132
           +DD     V +P+
Sbjct: 125 IDDASTAEVVIPL 131

The following BLAST results are available for this feature:

BLAST of Cla014282 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGN3_CUCSA	3.3e-56	85.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1	[more]
W9SCS0_9ROSA	8.2e-15	43.51	Uncharacterized protein OS=Morus notabilis GN=L484_026688 PE=4 SV=1	[more]
A0A067D7T3_CITSI	1.4e-14	47.46	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 S...	[more]
B9MXG5_POPTR	1.8e-14	42.97	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1	[more]
A0A061DFB2_THECC	5.3e-14	43.85	Transducin/WD40 repeat-like superfamily protein OS=Theobroma cacao GN=TCM_000214...	[more]

BLAST of Cla014282 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193706\|gb\|KGN48910.1\|	4.7e-56	85.07	hypothetical protein Csa_6G505880 [Cucumis sativus]	[more]
gi\|703163482\|ref\|XP_010113356.1\|	1.2e-14	43.51	hypothetical protein L484_026688 [Morus notabilis]	[more]
gi\|641818045\|gb\|KDO39059.1\|	2.0e-14	47.46	hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis]	[more]
gi\|566170839\|ref\|XP_006383111.1\|	2.6e-14	42.97	hypothetical protein POPTR_0005s11660g [Populus trichocarpa]	[more]
gi\|1009144161\|ref\|XP_015889648.1\|	5.8e-14	42.86	PREDICTED: uncharacterized protein LOC107424376 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016043	cellular component organization
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014282	Cla014282.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35111	FAMILY NOT NAMED	coord: 1..113 score: 3.3
None	No IPR available	PANTHER	PTHR35111:SF1	SUBFAMILY NOT NAMED	coord: 1..113 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014282	Cla97C01G019690	Watermelon (97103) v2	wmwmbB234
Cla014282	Csa6G505880	Cucumber (Chinese Long) v2	cuwmB500
Cla014282	MELO3C007900	Melon (DHL92) v3.5.1	mewmB570
Cla014282	ClCG01G020280	Watermelon (Charleston Gray)	wcgwmB141
Cla014282	CSPI06G31740	Wild cucumber (PI 183967)	cpiwmB519
Cla014282	Cucsa.043540	Cucumber (Gy14) v1	cgywmB026
Cla014282	CmaCh03G006890	Cucurbita maxima (Rimu)	cmawmB632
Cla014282	CmoCh03G007150	Cucurbita moschata (Rifu)	cmowmB623
Cla014282	Cp4.1LG10g00150	Cucurbita pepo (Zucchini)	cpewmB073
Cla014282	CsGy6G031240	Cucumber (Gy14) v2	cgybwmB468
Cla014282	MELO3C007900.2	Melon (DHL92) v3.6.1	medwmB559
Cla014282	CsaV3_6G047070	Cucumber (Chinese Long) v3	cucwmB526
Cla014282	Bhi03G000645	Wax gourd	wgowmB432

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014282	Cucurbita pepo (Zucchini)	cpewmB282
Cla014282	Cucurbita pepo (Zucchini)	cpewmB482
Cla014282	Cucurbita pepo (Zucchini)	cpewmB577
Cla014282	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014282	Bottle gourd (USVL1VR-Ls)	lsiwmB322
Cla014282	Bottle gourd (USVL1VR-Ls)	lsiwmB490
Cla014282	Cucumber (Gy14) v2	cgybwmB126
Cla014282	Cucumber (Gy14) v2	cgybwmB242
Cla014282	Melon (DHL92) v3.6.1	medwmB321
Cla014282	Melon (DHL92) v3.6.1	medwmB373
Cla014282	Silver-seed gourd	carwmB0407
Cla014282	Silver-seed gourd	carwmB0642
Cla014282	Silver-seed gourd	carwmB0984
Cla014282	Cucumber (Chinese Long) v3	cucwmB144
Cla014282	Cucumber (Chinese Long) v3	cucwmB266
Cla014282	Watermelon (97103) v2	wmwmbB270
Cla014282	Watermelon (97103) v2	wmwmbB283
Cla014282	Watermelon (97103) v1	wmwmB069
Cla014282	Watermelon (97103) v1	wmwmB127
Cla014282	Cucumber (Gy14) v1	cgywmB617
Cla014282	Cucurbita maxima (Rimu)	cmawmB169
Cla014282	Cucurbita maxima (Rimu)	cmawmB761
Cla014282	Cucurbita maxima (Rimu)	cmawmB826
Cla014282	Cucurbita moschata (Rifu)	cmowmB027
Cla014282	Cucurbita moschata (Rifu)	cmowmB153
Cla014282	Cucurbita moschata (Rifu)	cmowmB816
Cla014282	Melon (DHL92) v3.5.1	mewmB324
Cla014282	Watermelon (Charleston Gray)	wcgwmB420
Cla014282	Cucumber (Chinese Long) v2	cuwmB132