CmaCh03G006890 (gene) Cucurbita maxima (Rimu)

NameCmaCh03G006890
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTransducin/WD40 repeat-like superfamily protein
LocationCma_Chr03 : 5692129 .. 5693684 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGGTAAAAGTTTTATTTGGGTAACTGGCGGCGGAGCAAGGGATTGCTTGCATTTCAATTTAGCAACTTCGTGTGTTTGAAGTTAATGTATCCGGTTTTACAGTTTGGTTTTTATAGTCTGATAGACGTGTAATATATACTTGGATAATAGAAGAATTTATAATTTGGTGTGTTAGAAATTTCTCGTGGGGATATTTTTTCAATAACTTTAATATTAATATAAAAAATAAAAATAAAAATAAAAAATAAAAAACTTGGGCCACACCATTAGAGAGGTTTTAATTTTTTCCCTATACTTTTGTCCAATTTTATGTCCCACTTAGTTTAATATAAATATAGTTTTAATATTAACTAATTTTGAGATTCTAAATAATATTTAAACCGAAAACTTTGTTGTAAATTTTTTTTAATGGTTAAAGACGGTGGTGTAATATTAAAATTTAAAATTTTAAGAATAGTGGAGATAGAATTTATTATATTATATTTGCTTGTCAAATATATCTATTTATTATGATGTTTAAACATTTTTTTAATAAACATTATATCAAAAATGAAAATTTTTAAATAAGTTTTGGATCCACAAATTCTTGTTGACCAATTCTGGATCCCAACAAAAATAAATGAGAAATGAAATAGGTAATGGAGAGGAGGACGAGGAAGATTTTCCTATATACATCTATGGTTTATTCAAATTTATAAATTTTAATTTTAAATTTAATAAAATTCATCCCATCTATAGAATCATGAAATTAAAAGTTTAATATTGTATGTCAAATATAAAATTAATTCAATTTTATGTCTAATAAATTAGTTTATTAAAAAATGTAAAACAAATGTAAAAACGAGTAAAAGCGAACCATATGTAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

mRNA sequence

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

Coding sequence (CDS)

ATGGCGGAGAAAACCAGAAGAGTGCCCGGAAAGGCGAAGCTCAGAGGCGACGACATGAAGAACAGCAAGGCCCCACCGGCGATGACTCTGTTCGAGCGCCTCCGCGAGGCCGTTTTTCGATTCATAATGCTATGTGCTCTTTCAAAGGCTACAAATCATCATTCTGCTGGAGCCGTCTTCCAAGACGACGTCGTTAGACGGCGGCAGTCATATCAAAACGGTGACCACCACCACAGTGAAGCTGTCGCTGATTGCATTGAGTTCATCAAGAAGAAGGCGTATTCCGACGACGAGATAATTCTCGACCGCGGATCAGTGGACGCCGATGATGATATGGCTGCGTCGGTGCCGTTGCCGGTCAGTGGAAGGATAGAAAGTAACAGGTGGAAGAAAAGGGAGGGGTTGTTGCAGAAAGAGCAGGGAGGAATATGGGCTGCAGAGAGTGTCGGCTGTGATCAAGAGCAGCAGGGAAGGGAAGGGAGAATTGATACTTTGAAAGTGTCCAAATTGGAAGTGAAAAGAAGCAAAAGGGCAGGCGTGGGTGGATGTCATTTGGGCCATGTTACTAGTAAAGAACATTACGTACTGGAAGCCTCAAAAAGCTTTGAAGATGTTCATGGATCCACAGCTAAATTTGAGTGTACATACCCACCAGCCATGAATAGAAGGTTAGCGTTGAGCTATTTAGACTGA

Protein sequence

MAEKTRRVPGKAKLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSVDADDDMAASVPLPVSGRIESNRWKKREGLLQKEQGGIWAAESVGCDQEQQGREGRIDTLKVSKLEVKRSKRAGVGGCHLGHVTSKEHYVLEASKSFEDVHGSTAKFECTYPPAMNRRLALSYLD
BLAST of CmaCh03G006890 vs. TrEMBL
Match: A0A0A0KGN3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 100/133 (75.19%), Postives = 105/133 (78.95%), Query Frame = 1

Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSV-D 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

BLAST of CmaCh03G006890 vs. TrEMBL
Match: B9MXG5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.4e-15
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1

Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDEIIL--DRGSVDADDDMAASVPLPVS 122
           SEAVADCIEFIKK + +D E I      S   DD    ++P+PV+
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPVT 148

BLAST of CmaCh03G006890 vs. TrEMBL
Match: A0A067D7T3_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-13
Identity = 53/101 (52.48%), Postives = 59/101 (58.42%), Query Frame = 1

Query: 16  GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNH-HSAGAVFQDDVVRRRQSYQNG 75
           G +  N    PAMTL ER REAVFR IML ALSKAT   H+     +      R  Y   
Sbjct: 13  GSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAHVSRSYYNPA 72

Query: 76  DHHHSEAVADCIEFIKKKAYSDDEIILDRGSVDADDDMAAS 116
           D HHSEAVADCIEFIKKKA +DDE        D D+D +AS
Sbjct: 73  DPHHSEAVADCIEFIKKKALTDDE------DYDHDNDNSAS 107

BLAST of CmaCh03G006890 vs. TrEMBL
Match: A0A151TIL0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_013184 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 13 KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQ 72
          +L+ +  K++K P  MTL ER REAV R +ML ALSKAT +H  G        R  + Y 
Sbjct: 9  RLKSNSCKSNKPPSPMTLLERFREAVLRLMMLSALSKATTNHRDGE-------RHNRRYN 68

Query: 73 NGDH--HHSEAVADCIEFIKKKAYSD 97
          N  H  HHSEAVADCIEFIKKKA +D
Sbjct: 69 NSPHDPHHSEAVADCIEFIKKKAATD 87

BLAST of CmaCh03G006890 vs. TrEMBL
Match: I1LI09_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G076300 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 47/84 (55.95%), Postives = 53/84 (63.10%), Query Frame = 1

Query: 13 KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQ 72
          +L+    KN K P  MTL ER REAV R +ML ALSKATNH  +G    D   + R    
Sbjct: 9  RLKSSSCKN-KTPSPMTLLERFREAVLRLMMLSALSKATNHRRSG----DGERQNRHFNS 68

Query: 73 NGDHHHSEAVADCIEFIKKKAYSD 97
            D HHSEAVADCIEFIKKKA +D
Sbjct: 69 PHDPHHSEAVADCIEFIKKKAATD 87

BLAST of CmaCh03G006890 vs. NCBI nr
Match: gi|700193706|gb|KGN48910.1| (hypothetical protein Csa_6G505880 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 100/133 (75.19%), Postives = 105/133 (78.95%), Query Frame = 1

Query: 1   MAEKTRRVPGKAK------LR----GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKA 60
           MAEK+RRVP K K      LR    GD  K +K P  MTLFERLREAVFRFIMLCALSKA
Sbjct: 1   MAEKSRRVPRKIKPPPNLCLRKPRSGDAKKTTKPPSPMTLFERLREAVFRFIMLCALSKA 60

Query: 61  TNHH-SAGAVFQDDVV-RRRQSYQNGDHHHSEAVADCIEFIKKKAYSDDEIILDRGSV-D 120
           TNHH +AGA FQDDVV RRR SY N DHHHSEAVADCIEFIK KAYSDDE+ILDRGSV D
Sbjct: 61  TNHHPAAGATFQDDVVVRRRHSYPNVDHHHSEAVADCIEFIKMKAYSDDEVILDRGSVDD 120

BLAST of CmaCh03G006890 vs. NCBI nr
Match: gi|566170839|ref|XP_006383111.1| (hypothetical protein POPTR_0005s11660g [Populus trichocarpa])

HSP 1 Score: 89.4 bits (220), Expect = 9.2e-15
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1

Query: 19  MKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHH 78
           +KN +  P MTL ER R+AVFR +ML ALSKAT H++AG+     V+++R SY   D HH
Sbjct: 46  IKNHRLSP-MTLLERFRQAVFRLMMLSALSKAT-HNAAGSSPDHHVMKKRSSYYPADPHH 105

Query: 79  SEAVADCIEFIKKKAYSDDEIIL--DRGSVDADDDMAASVPLPVS 122
           SEAVADCIEFIKK + +D E I      S   DD    ++P+PV+
Sbjct: 106 SEAVADCIEFIKKSSLTDQEEINRDSTASSSFDDTGEMAMPVPVT 148

BLAST of CmaCh03G006890 vs. NCBI nr
Match: gi|641818045|gb|KDO39059.1| (hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis])

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 53/101 (52.48%), Postives = 59/101 (58.42%), Query Frame = 1

Query: 16  GDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNH-HSAGAVFQDDVVRRRQSYQNG 75
           G +  N    PAMTL ER REAVFR IML ALSKAT   H+     +      R  Y   
Sbjct: 13  GSNGNNKNKTPAMTLLERFREAVFRLIMLSALSKATTTTHNNYHHHRHQAHVSRSYYNPA 72

Query: 76  DHHHSEAVADCIEFIKKKAYSDDEIILDRGSVDADDDMAAS 116
           D HHSEAVADCIEFIKKKA +DDE        D D+D +AS
Sbjct: 73  DPHHSEAVADCIEFIKKKALTDDE------DYDHDNDNSAS 107

BLAST of CmaCh03G006890 vs. NCBI nr
Match: gi|1012355686|gb|KYP66873.1| (hypothetical protein KK1_013184 [Cajanus cajan])

HSP 1 Score: 82.8 bits (203), Expect = 8.6e-13
Identity = 46/86 (53.49%), Postives = 55/86 (63.95%), Query Frame = 1

Query: 13 KLRGDDMKNSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQ 72
          +L+ +  K++K P  MTL ER REAV R +ML ALSKAT +H  G        R  + Y 
Sbjct: 9  RLKSNSCKSNKPPSPMTLLERFREAVLRLMMLSALSKATTNHRDGE-------RHNRRYN 68

Query: 73 NGDH--HHSEAVADCIEFIKKKAYSD 97
          N  H  HHSEAVADCIEFIKKKA +D
Sbjct: 69 NSPHDPHHSEAVADCIEFIKKKAATD 87

BLAST of CmaCh03G006890 vs. NCBI nr
Match: gi|731386829|ref|XP_010649044.1| (PREDICTED: uncharacterized protein LOC104879129 [Vitis vinifera])

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 52/100 (52.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query: 21  NSKAPPAMTLFERLREAVFRFIMLCALSKATNHHSAGAVFQDDVVRRRQSYQNGDHHHSE 80
           N++  PAM+L ER REAVFR IML ALSKAT+H  +      DV R   SY   + HHSE
Sbjct: 36  NNRLSPAMSLLERFREAVFRLIMLTALSKATSHSGS-----RDVPR---SYYPNEPHHSE 95

Query: 81  AVADCIEFIKKKAYSDDEIILDRGSVDADDDMAASVPLPV 121
           AVADCIEFIKK A   D    +R S  A   M  ++P+PV
Sbjct: 96  AVADCIEFIKKSASPGD----NRDST-ASSSMDTAMPVPV 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KGN3_CUCSA1.2e-4075.19Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505880 PE=4 SV=1[more]
B9MXG5_POPTR6.4e-1550.48Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11660g PE=4 SV=1[more]
A0A067D7T3_CITSI1.6e-1352.48Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g035989mg PE=4 S... [more]
A0A151TIL0_CAJCA6.0e-1353.49Uncharacterized protein OS=Cajanus cajan GN=KK1_013184 PE=4 SV=1[more]
I1LI09_SOYBN2.3e-1255.95Uncharacterized protein OS=Glycine max GN=GLYMA_11G076300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700193706|gb|KGN48910.1|1.7e-4075.19hypothetical protein Csa_6G505880 [Cucumis sativus][more]
gi|566170839|ref|XP_006383111.1|9.2e-1550.48hypothetical protein POPTR_0005s11660g [Populus trichocarpa][more]
gi|641818045|gb|KDO39059.1|2.3e-1352.48hypothetical protein CISIN_1g035989mg, partial [Citrus sinensis][more]
gi|1012355686|gb|KYP66873.1|8.6e-1353.49hypothetical protein KK1_013184 [Cajanus cajan][more]
gi|731386829|ref|XP_010649044.1|2.5e-1252.00PREDICTED: uncharacterized protein LOC104879129 [Vitis vinifera][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G006890.1CmaCh03G006890.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35111FAMILY NOT NAMEDcoord: 28..102
score: 4.9
NoneNo IPR availablePANTHERPTHR35111:SF1SUBFAMILY NOT NAMEDcoord: 28..102
score: 4.9

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G006890Cucumber (Chinese Long) v3cmacucB0783
CmaCh03G006890Cucumber (Chinese Long) v3cmacucB0790
CmaCh03G006890Watermelon (97103) v2cmawmbB695
CmaCh03G006890Watermelon (97103) v2cmawmbB700
CmaCh03G006890Cucurbita maxima (Rimu)cmacmaB061
CmaCh03G006890Cucurbita maxima (Rimu)cmacmaB185
CmaCh03G006890Cucurbita maxima (Rimu)cmacmaB422
CmaCh03G006890Cucurbita maxima (Rimu)cmacmaB519
CmaCh03G006890Cucurbita maxima (Rimu)cmacmaB523
CmaCh03G006890Cucumber (Gy14) v1cgycmaB0937
CmaCh03G006890Cucurbita moschata (Rifu)cmacmoB633
CmaCh03G006890Cucurbita moschata (Rifu)cmacmoB647
CmaCh03G006890Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G006890Wild cucumber (PI 183967)cmacpiB663
CmaCh03G006890Wild cucumber (PI 183967)cmacpiB669
CmaCh03G006890Cucumber (Chinese Long) v2cmacuB661
CmaCh03G006890Cucumber (Chinese Long) v2cmacuB655
CmaCh03G006890Melon (DHL92) v3.5.1cmameB594
CmaCh03G006890Watermelon (97103) v1cmawmB626
CmaCh03G006890Cucurbita pepo (Zucchini)cmacpeB661
CmaCh03G006890Cucurbita pepo (Zucchini)cmacpeB678
CmaCh03G006890Cucurbita pepo (Zucchini)cmacpeB671
CmaCh03G006890Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G006890Bottle gourd (USVL1VR-Ls)cmalsiB619
CmaCh03G006890Bottle gourd (USVL1VR-Ls)cmalsiB615
CmaCh03G006890Cucumber (Gy14) v2cgybcmaB242
CmaCh03G006890Cucumber (Gy14) v2cgybcmaB408
CmaCh03G006890Melon (DHL92) v3.6.1cmamedB678
CmaCh03G006890Melon (DHL92) v3.6.1cmamedB685
CmaCh03G006890Silver-seed gourdcarcmaB0567
CmaCh03G006890Silver-seed gourdcarcmaB0912
CmaCh03G006890Silver-seed gourdcarcmaB1355