CmoCh03G001790 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G001790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionBeta-galactosidase (3.2.1.23)
LocationCmo_Chr03 : 2809414 .. 2809696 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGGAATCCAACTAAGAACTAACAATCAAGTCTACAAGAATGAAATGCAAACTTTCACGACGAAAATAGTGAATATGTGTAAACAAGGCAACCTCTTTGCATCGCAAGGAGGGCTAGTAATCTTAGCTCAAATCGAGGATGAGTATGGAAGCGTGATGACACCTTATGGAAATGTAGGAAAAATATATATCAATTGGTGCGCTCAAATGGTCGAATCTCTTAATATTGGCGTTCCATGGATCATGTGCCAATAGAGTGATGCCCACAACTTATCTTTAA

mRNA sequence

ATGCCGGGAATCCAACTAAGAACTAACAATCAAGTCTACAAGAATGAAATGCAAACTTTCACGACGAAAATAGTGAATATGTGTAAACAAGGCAACCTCTTTGCATCGCAAGGAGGGCTAGTAATCTTAGCTCAAATCGAGGATGAGTATGGAAGCGTGATGACACCTTATGGAAATGAAAAATATATATCAATTGGTGCGCTCAAATGGTCGAATCTCTTAATATTGGCGTTCCATGGATCATGTGCCAATAGAGTGATGCCCACAACTTATCTTTAA

Coding sequence (CDS)

ATGCCGGGAATCCAACTAAGAACTAACAATCAAGTCTACAAGAATGAAATGCAAACTTTCACGACGAAAATAGTGAATATGTGTAAACAAGGCAACCTCTTTGCATCGCAAGGAGGGCTAGTAATCTTAGCTCAAATCGAGGATGAGTATGGAAGCGTGATGACACCTTATGGAAATGAAAAATATATATCAATTGGTGCGCTCAAATGGTCGAATCTCTTAATATTGGCGTTCCATGGATCATGTGCCAATAGAGTGATGCCCACAACTTATCTTTAA
BLAST of CmoCh03G001790 vs. Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.1e-14
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           MP ++ RT N  + NEMQ FTTKIVNM K+ +LFASQGG +ILAQIE+EYG+V++ YG E
Sbjct: 135 MPDMKFRTINPGFMNEMQNFTTKIVNMMKEESLFASQGGPIILAQIENEYGNVISSYGAE 194

BLAST of CmoCh03G001790 vs. Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           MP ++ RT N  + NEMQ FTTKIV M K+  LFASQGG +ILAQIE+EYG+V++ YG E
Sbjct: 136 MPNMKFRTVNPSFMNEMQNFTTKIVKMMKEEKLFASQGGPIILAQIENEYGNVISSYGAE 195

BLAST of CmoCh03G001790 vs. Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-13
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           +PGI+ RT+N+ +K EMQ FTTKIV++ KQ  L+ASQGG +IL+QIE+EYG++ + YG  
Sbjct: 140 VPGIKFRTDNEPFKEEMQRFTTKIVDLMKQEKLYASQGGPIILSQIENEYGNIDSAYG-- 199

Query: 61  KYISIGALKWSNLLILA 78
              +   +KWS  + L+
Sbjct: 200 -AAAKSYIKWSASMALS 213

BLAST of CmoCh03G001790 vs. Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.0e-13
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPG++ RT N  + NEMQ FTT IV M K+  LFASQGG +ILAQIE+EYG+V+  YG
Sbjct: 130 MPGMEFRTTNTAFMNEMQNFTTMIVEMVKKEKLFASQGGPIILAQIENEYGNVIGSYG 187

BLAST of CmoCh03G001790 vs. Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.7e-12
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           +PG+Q R +N+ ++NEM+TFTT IVN  K   +FA QGG +ILAQIE+EYG++M    N 
Sbjct: 139 IPGMQFRLHNEPFENEMETFTTLIVNKMKDSKMFAEQGGPIILAQIENEYGNIMGKLNNN 198

Query: 61  KYIS 65
           +  S
Sbjct: 199 QSAS 202

BLAST of CmoCh03G001790 vs. TrEMBL
Match: A0A0A0LDH9_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 2.8e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYG
Sbjct: 135 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYG 192

BLAST of CmoCh03G001790 vs. TrEMBL
Match: A0A0A0LXX7_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 52/59 (88.14%), Postives = 56/59 (94.92%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGN 60
           MPGIQLRT+NQVYKNEM TFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYGN
Sbjct: 113 MPGIQLRTDNQVYKNEMLTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGN 171

BLAST of CmoCh03G001790 vs. TrEMBL
Match: A0A0A0KL41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168850 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTP-YGN 60
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTP YG+
Sbjct: 64  MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPAYGD 123

BLAST of CmoCh03G001790 vs. TrEMBL
Match: A0A0A0KRM6_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTP-YGN 60
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTP YG+
Sbjct: 130 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPAYGD 189

BLAST of CmoCh03G001790 vs. TrEMBL
Match: A0A0A0M006_CUCSA (Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.1e-21
Identity = 53/60 (88.33%), Postives = 57/60 (95.00%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTP-YGN 60
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTP YG+
Sbjct: 130 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPAYGD 189

BLAST of CmoCh03G001790 vs. TAIR10
Match: AT2G28470.1 (AT2G28470.1 beta-galactosidase 8)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-15
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           +PGI+ RT+N+ +K EMQ FTTKIV++ KQ  L+ASQGG +IL+QIE+EYG++ + YG  
Sbjct: 140 VPGIKFRTDNEPFKEEMQRFTTKIVDLMKQEKLYASQGGPIILSQIENEYGNIDSAYG-- 199

Query: 61  KYISIGALKWSNLLILA 78
              +   +KWS  + L+
Sbjct: 200 -AAAKSYIKWSASMALS 213

BLAST of CmoCh03G001790 vs. TAIR10
Match: AT5G20710.1 (AT5G20710.1 beta-galactosidase 7)

HSP 1 Score: 77.0 bits (188), Expect = 6.6e-15
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           MP ++ RT N  + NEMQ FTTKIV M K+  LFASQGG +ILAQIE+EYG+V++ YG E
Sbjct: 136 MPNMKFRTVNPSFMNEMQNFTTKIVKMMKEEKLFASQGGPIILAQIENEYGNVISSYGAE 195

BLAST of CmoCh03G001790 vs. TAIR10
Match: AT1G31740.1 (AT1G31740.1 beta-galactosidase 15)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-14
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPG++ RT N  + NEMQ FTT IV M K+  LFASQGG +ILAQIE+EYG+V+  YG
Sbjct: 153 MPGMEFRTTNTAFMNEMQNFTTMIVEMVKKEKLFASQGGPIILAQIENEYGNVIGSYG 210

BLAST of CmoCh03G001790 vs. TAIR10
Match: AT2G32810.1 (AT2G32810.1 beta galactosidase 9)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGNE 60
           +PGI+ RT+N+ +K EMQ F TKIV++ ++  LF  QGG +I+ QIE+EYG V   YG +
Sbjct: 146 IPGIEFRTDNEPFKKEMQKFVTKIVDLMREAKLFCWQGGPIIMLQIENEYGDVEKSYGQK 205

BLAST of CmoCh03G001790 vs. TAIR10
Match: AT3G13750.1 (AT3G13750.1 beta galactosidase 1)

HSP 1 Score: 66.6 bits (161), Expect = 9.0e-12
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYG 52
           +PGI  RT+N  +K +MQ FTTKIVNM K   LF SQGG +IL+QIE+EYG
Sbjct: 142 IPGISFRTDNGPFKAQMQRFTTKIVNMMKAERLFESQGGPIILSQIENEYG 192

BLAST of CmoCh03G001790 vs. NCBI nr
Match: gi|659118476|ref|XP_008459141.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 3.1e-22
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGN 60
           MPG+QLRT+NQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYGN
Sbjct: 134 MPGVQLRTDNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGN 192

BLAST of CmoCh03G001790 vs. NCBI nr
Match: gi|778688671|ref|XP_011652808.1| (PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYG
Sbjct: 135 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYG 192

BLAST of CmoCh03G001790 vs. NCBI nr
Match: gi|700203008|gb|KGN58141.1| (hypothetical protein Csa_3G550690 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYG
Sbjct: 135 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYG 192

BLAST of CmoCh03G001790 vs. NCBI nr
Match: gi|659093706|ref|XP_008447673.1| (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 112.5 bits (280), Expect = 4.0e-22
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYG 59
           MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYG
Sbjct: 135 MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYG 192

BLAST of CmoCh03G001790 vs. NCBI nr
Match: gi|659129875|ref|XP_008464891.1| (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 6.9e-22
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = 1

Query: 1   MPGIQLRTNNQVYKNEMQTFTTKIVNMCKQGNLFASQGGLVILAQIEDEYGSVMTPYGN 60
           +PGIQLRT+NQVYKNEMQTFTTKIVNMCKQ NLFASQGG +ILAQIE+EYG+VMTPYGN
Sbjct: 134 IPGIQLRTDNQVYKNEMQTFTTKIVNMCKQANLFASQGGPIILAQIENEYGNVMTPYGN 192

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
BGAL_BRAOL3.1e-1463.33Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGAL7_ARATH1.2e-1361.67Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2[more]
BGAL8_ARATH1.2e-1349.35Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2[more]
BGA15_ARATH2.0e-1362.07Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1[more]
BGAL1_ORYSJ1.7e-1251.56Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LDH9_CUCSA2.8e-2291.38Beta-galactosidase OS=Cucumis sativus GN=Csa_3G550690 PE=3 SV=1[more]
A0A0A0LXX7_CUCSA1.1e-2188.14Beta-galactosidase OS=Cucumis sativus GN=Csa_1G643050 PE=3 SV=1[more]
A0A0A0KL41_CUCSA4.1e-2188.33Uncharacterized protein OS=Cucumis sativus GN=Csa_5G168850 PE=4 SV=1[more]
A0A0A0KRM6_CUCSA4.1e-2188.33Beta-galactosidase OS=Cucumis sativus GN=Csa_5G169120 PE=3 SV=1[more]
A0A0A0M006_CUCSA4.1e-2188.33Beta-galactosidase OS=Cucumis sativus GN=Csa_1G650110 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G28470.16.6e-1549.35 beta-galactosidase 8[more]
AT5G20710.16.6e-1561.67 beta-galactosidase 7[more]
AT1G31740.11.1e-1462.07 beta-galactosidase 15[more]
AT2G32810.12.4e-1250.00 beta galactosidase 9[more]
AT3G13750.19.0e-1262.75 beta galactosidase 1[more]
Match NameE-valueIdentityDescription
gi|659118476|ref|XP_008459141.1|3.1e-2288.14PREDICTED: beta-galactosidase 15-like [Cucumis melo][more]
gi|778688671|ref|XP_011652808.1|4.0e-2291.38PREDICTED: LOW QUALITY PROTEIN: beta-galactosidase-like [Cucumis sativus][more]
gi|700203008|gb|KGN58141.1|4.0e-2291.38hypothetical protein Csa_3G550690 [Cucumis sativus][more]
gi|659093706|ref|XP_008447673.1|4.0e-2291.38PREDICTED: beta-galactosidase 15-like [Cucumis melo][more]
gi|659129875|ref|XP_008464891.1|6.9e-2288.14PREDICTED: beta-galactosidase-like [Cucumis melo][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001944Glycoside_Hdrlase_35
IPR013781Glycoside hydrolase, catalytic domain
IPR017853Glycoside_hydrolase_SF
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006012 galactose metabolic process
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006027 glycosaminoglycan catabolic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0009341 beta-galactosidase complex
molecular_function GO:0004565 beta-galactosidase activity
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G001790.1CmoCh03G001790.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001944Glycoside hydrolase, family 35PANTHERPTHR23421BETA-GALACTOSIDASE RELATEDcoord: 1..59
score: 3.9
IPR013781Glycoside hydrolase, catalytic domainGENE3DG3DSA:3.20.20.80coord: 2..62
score: 8.6
IPR017853Glycoside hydrolase superfamilyunknownSSF51445(Trans)glycosidasescoord: 3..63
score: 8.1
NoneNo IPR availablePANTHERPTHR23421:SF80SUBFAMILY NOT NAMEDcoord: 1..59
score: 3.9

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G001790Cp4.1LG10g11980Cucurbita pepo (Zucchini)cmocpeB605
CmoCh03G001790Cp4.1LG01g17380Cucurbita pepo (Zucchini)cmocpeB617
The following gene(s) are paralogous to this gene:

None