CmoCh02G017190 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G017190
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRPM1 interacting protein 4 transcript protein
LocationCmo_Chr02 : 9837805 .. 9838847 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGTAGGTAATGATCATATATGGTTCATACATTAGAGCTATCTCAAGCACGTAGAAGTGAGGATTTAAAATCTTGAACATTTTGGTTGATAGTGTAGGTGAGATCCCACGTTGGTTGGTTGGTTGGGGAGGGTGAAACATTTTTTTATAAGAGTGTGGAAACCTCTCCCTACTAGATGCGTTCTAGAAACTTTGAGGAAAAATGACAATATGTTCTAGCGGTGGACTTGGGCTATTAGAGCATATGTCTGAACTAGAACTAGAACTAGATGAATTAATGTTCAAATTGACATAGCTATCTTTCTTTGTTCATAATCGATACGGAACTGAAATGGTTGCAAACTAACCAAAGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGAGATTACTGAGATTTGATAATGCAAATGTCTTACATTCTTCTGTTCTTCCTCAAAATTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGCAAATGATATTGTTCTTTGCATTTTCCACGTGAGATTACTTAGATTGCATGAACATGTGAGAATAATGTAGATTATTTCATGGATCTGGCTGCAGCTCACCTCCTTCAATGCCATCTGATTGAAAGTGTTTGTCTGTGGCCAAAGTTGTAAGCAAAGACAAAATTTGATTGTGTTGTTTGGGGTTTACAATTTTTTCTTATTTCGAGATTCATCTGTTGGATATCTATTCTTCATTTTAATAACTGTACTGTGATTTTGGTGTTATGTGTTCTTATTTAATGTTGTAATGTAATGTGTTCTTATTTAATGTTGTA

mRNA sequence

ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGAGATTACTGAGATTTGATAATGCAAATGTCTTACATTCTTCTGTTCTTCCTCAAAATTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGCAAATGATATTGTTCTTTGCATTTTCCACGTGAGATTACTTAGATTGCATGAACATGTGAGAATAATGTAGATTATTTCATGGATCTGGCTGCAGCTCACCTCCTTCAATGCCATCTGATTGAAAGTGTTTGTCTGTGGCCAAAGTTGTAAGCAAAGACAAAATTTGATTGTGTTGTTTGGGGTTTACAATTTTTTCTTATTTCGAGATTCATCTGTTGGATATCTATTCTTCATTTTAATAACTGTACTGTGATTTTGGTGTTATGTGTTCTTATTTAATGTTGTAATGTAATGTGTTCTTATTTAATGTTGTA

Coding sequence (CDS)

ATGGATATGGATGATATTGATTCTTATTCAAAGACTTATATTTGTGGTGCATCTTTTAGGTCAATGGACAAAGAAGTTGCGGTTCCAAAATTTGGTGAATGGAACGACAGGGACGCCACACCGCCAGACAACTACACAGCTATTTTCACCAAGGTGCGGGAAGAGAGACAAGACCAGGGAGCAAGGACGCCGACGCTGCCACAGAACAGTAACATCCCAGATAACCAAAATAATGAACAAAATCAGAAGGTAATTGAAGAACTCTCTTCCATTTCTCAGCCAACCACGTGA
Homology
[Close]
BLAST of CmoCh02G017190 vs. TrEMBL
Match: A0A0A0L950_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-11
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 23 DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNNEQN 82
          D E AVPKFGEW+D DA  P+NYTAIF KVREERQDQ  R TPT   +S   ++QN+EQN
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDST--NSQNHEQN 62

Query: 83 QKVIEEL 89
          QK+ +++
Sbjct: 63 QKLGQKI 67

[Close]
BLAST of CmoCh02G017190 vs. TAIR10
Match: AT3G25070.1 (AT3G25070.1 RPM1 interacting protein 4)

HSP 1 Score: 47.0 bits (110), Expect = 7.7e-06
Identity = 27/63 (42.86%), Postives = 38/63 (60.32%), Query Frame = 1 

Query: 21  SMDKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQ-----DQGARTPTLPQNSNIPDN 79
           S +K   VPKFG+W++ + +  D YT IF KVREER         +RTPT  Q+S  P+N
Sbjct: 141 SPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPT-HQSSRNPNN 200

[Close]
BLAST of CmoCh02G017190 vs. NCBI nr
Match: gi|700203235|gb|KGN58368.1| (hypothetical protein Csa_3G630240 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 1.3e-10
Identity = 41/67 (61.19%), Postives = 51/67 (76.12%), Query Frame = 1 

Query: 23 DKEVAVPKFGEWNDRDATPPDNYTAIFTKVREERQDQGAR-TPTLPQNSNIPDNQNNEQN 82
          D E AVPKFGEW+D DA  P+NYTAIF KVREERQDQ  R TPT   +S   ++QN+EQN
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDST--NSQNHEQN 62

Query: 83 QKVIEEL 89
          QK+ +++
Sbjct: 63 QKLGQKI 67

The following BLAST results are available for this feature:
BLAST of CmoCh02G017190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G017190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L950_CUCSA8.9e-1161.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630240 PE=4 SV=1[more]
BLAST of CmoCh02G017190 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G25070.17.7e-0642.86 RPM1 interacting protein 4[more]
BLAST of CmoCh02G017190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203235|gb|KGN58368.1|1.3e-1061.19hypothetical protein Csa_3G630240 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G017190.1CmoCh02G017190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 23..57
score: 5.0
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 20..90
score: 6.0
NoneNo IPR availablePANTHERPTHR33159:SF6RPM1-INTERACTING PROTEIN 4coord: 20..90
score: 6.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G017190Cucsa.150170Cucumber (Gy14) v1cgycmoB0414
CmoCh02G017190Csa3G630240Cucumber (Chinese Long) v2cmocuB590
CmoCh02G017190ClCG07G002040Watermelon (Charleston Gray)cmowcgB566
CmoCh02G017190CSPI03G27610Wild cucumber (PI 183967)cmocpiB595
CmoCh02G017190Lsi05G011250Bottle gourd (USVL1VR-Ls)cmolsiB565
CmoCh02G017190Cp4.1LG05g00710Cucurbita pepo (Zucchini)cmocpeB596
CmoCh02G017190MELO3C030883.2Melon (DHL92) v3.6.1cmomedB640
CmoCh02G017190Cla97C07G130320Watermelon (97103) v2cmowmbB631
CmoCh02G017190Bhi05G000049Wax gourdcmowgoB0725
CmoCh02G017190Carg08897Silver-seed gourdcarcmoB1057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G017190Silver-seed gourdcarcmoB0400
CmoCh02G017190Silver-seed gourdcarcmoB1287
CmoCh02G017190Cucumber (Chinese Long) v3cmocucB0703
CmoCh02G017190Watermelon (97103) v2cmowmbB622
CmoCh02G017190Cucurbita moschata (Rifu)cmocmoB213
CmoCh02G017190Cucurbita moschata (Rifu)cmocmoB387
CmoCh02G017190Cucurbita moschata (Rifu)cmocmoB437
CmoCh02G017190Cucumber (Gy14) v1cgycmoB0713
CmoCh02G017190Cucurbita maxima (Rimu)cmacmoB261
CmoCh02G017190Cucurbita maxima (Rimu)cmacmoB523
CmoCh02G017190Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G017190Wild cucumber (PI 183967)cmocpiB588
CmoCh02G017190Melon (DHL92) v3.5.1cmomeB559
CmoCh02G017190Watermelon (97103) v1cmowmB552
CmoCh02G017190Cucurbita pepo (Zucchini)cmocpeB564
CmoCh02G017190Cucurbita pepo (Zucchini)cmocpeB590
CmoCh02G017190Cucurbita pepo (Zucchini)cmocpeB599
CmoCh02G017190Bottle gourd (USVL1VR-Ls)cmolsiB566
CmoCh02G017190Cucumber (Gy14) v2cgybcmoB368
CmoCh02G017190Cucumber (Gy14) v2cgybcmoB362
CmoCh02G017190Melon (DHL92) v3.6.1cmomedB648