Cla97C07G130320 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G130320
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RPM1-interacting protein 4
Location	Cla97Chr07 : 2021154 .. 2022069 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGTGCGTCTCAGCTGTAGATAATGATAACAAATGATTTAGAGGCAGCTCAAAGCAATTACAAATTCTTGTTTCATATTGTCTACTTTACTTTGAATTTAAGGCCTTAAAAACATTTTTTCAAATATGTTTGGCACACTGAGTGAGTTTTGAAGTTTGGAATTAATATGTTGGAGTTAAGAAGTTAGTGTTTGGGGTGTAGAGTTCTAAGATGGAGTTCCTCGACAAATGTATAAAGGGGAGAAAGAGGCAAAGATGGAGTTTTTCGATAAATATGCAAAATTCAATAGTGAACAATATTGAAGGCGAGTTATTTAACGTTGACTTATCAAGTTGGTGGGTCAAATACCCTCTTAAGATGTAATTTCGAACAGTTCCTATGACAGTATAGATTTTAATTTGCTACTGAAATCTTCCAAAAGGCGTTGTTATCATTACATATGTCTGATCCCTATGAATCTATAGCTTTCTTTATTTCTAATTGATATGGAAATGCAATGGTTGCAAATGAAAGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

mRNA sequence

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

Coding sequence (CDS)

ATGCATTTGGAGGATATTGATTCCTCCAAATACTGTCTTGAAGATTTTAAATTTGTGGATAACGAAGCTGCAATTCCAAAATTTGGTGAATGGGACGACAGAGATGCCAAAGCACCGGACAACTACACGGCTATTTTCAACATGGTGAGGGAAGGGAGACAAGATCCAGGACGAGCTCGAACATCATCACGGTCGATCGATAACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCGCAGGAGATCATTGTGATTCTAATATCCATTGTCTTACGTTGTTGCCTACCTTCAAAACTTTTCAGAAATGCTGTTGTTTCCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAGTTAA

Protein sequence

MHLEDIDSSKYCLEDFKFVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQKVMKSFLPFLNQPQEIIVILISIVLRCCLPSKLFRNAVVSHGQENDIVLHLHKHS

Homology

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: KGN58368.1 (hypothetical protein Csa_3G630240 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 3.0e-14
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
          DNE A+PKFGEWDD DAKAP+NYTAIFN VRE RQD     T +R ID STN+QNHEQNQ
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLID-STNSQNHEQNQ 62

Query: 80 KV 82
          K+
Sbjct: 63 KL 63

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: XP_006340017.1 (PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum tuberosum])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 191 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 250

Query: 80  KVMK 84
           K MK
Sbjct: 251 KQMK 250

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: XP_006340018.1 (PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum tuberosum])

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-04
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 190 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 249

Query: 80  KVMK 84
           K MK
Sbjct: 250 KQMK 249

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: XP_010036800.1 (PREDICTED: RPM1-interacting protein 4 [Eucalyptus grandis] >KCW48444.1 hypothetical protein EUGRSUZ_K02142 [Eucalyptus grandis])

HSP 1 Score: 53.9 bits (128), Expect = 4.8e-04
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 0


Query: 19  VDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRART 62
           VD+ AA+PKFGEWD+ D  + D YT IFN VRE RQ  G ART
Sbjct: 194 VDSGAAVPKFGEWDESDPASADGYTHIFNKVREERQ--GGART 234

[Close]

BLAST of Cla97C07G130320 vs. NCBI nr
Match: GAY40081.1 (hypothetical protein CUMW_049260 [Citrus unshiu])

HSP 1 Score: 53.5 bits (127), Expect = 6.3e-04
Identity = 28/62 (45.16%), Postives = 35/62 (56.45%), Query Frame = 0


Query: 15  DFKFVDNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSS----RSIDNST 73
           D +  D  AA+PKFG+WD+ +  + D YT IFN VRE R   GRA   S    R+    T
Sbjct: 274 DLEVPDKGAAVPKFGDWDENNPSSADGYTHIFNQVREERNSAGRAGMQSPSTQRNYQRPT 333

[Close]

BLAST of Cla97C07G130320 vs. TrEMBL
Match: tr|A0A0A0L950|A0A0A0L950_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.0e-14
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 20 DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
          DNE A+PKFGEWDD DAKAP+NYTAIFN VRE RQD     T +R ID STN+QNHEQNQ
Sbjct: 3  DNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLID-STNSQNHEQNQ 62

Query: 80 KV 82
          K+
Sbjct: 63 KL 63

[Close]

BLAST of Cla97C07G130320 vs. TrEMBL
Match: tr|M1CPC9|M1CPC9_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 191 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 250

Query: 80  KVMK 84
           K MK
Sbjct: 251 KQMK 250

[Close]

BLAST of Cla97C07G130320 vs. TrEMBL
Match: tr|M1CPD0|M1CPD0_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.4e-05
Identity = 31/64 (48.44%), Postives = 40/64 (62.50%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q    + T SR+   S N Q H   +
Sbjct: 190 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQG-NPSGTPSRA---SNNTQKHNSEE 249

Query: 80  KVMK 84
           K MK
Sbjct: 250 KQMK 249

[Close]

BLAST of Cla97C07G130320 vs. TrEMBL
Match: tr|M1CPD2|M1CPD2_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q
Sbjct: 154 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQ--GNPSGTPSRASNNTQKHNSEEKQ 213

Query: 80  KV 82
            V
Sbjct: 214 MV 213

[Close]

BLAST of Cla97C07G130320 vs. TrEMBL
Match: tr|M1CPD1|M1CPD1_SOLTU (Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 20  DNEAAIPKFGEWDDRDAKAPDNYTAIFNMVREGRQDPGRARTSSRSIDNSTNNQNHEQNQ 79
           D  AA+P+FGEWD+ D ++ DNYT IFN VRE +Q  G    +     N+T   N E+ Q
Sbjct: 190 DRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQ--GNPSGTPSRASNNTQKHNSEEKQ 249

Query: 80  KV 82
            V
Sbjct: 250 MV 249

The following BLAST results are available for this feature:

BLAST of Cla97C07G130320 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58368.1	3.0e-14	72.58	hypothetical protein Csa_3G630240 [Cucumis sativus]	[more]
XP_006340017.1	1.3e-04	48.44	PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum tuberosum]	[more]
XP_006340018.1	1.3e-04	48.44	PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum tuberosum]	[more]
XP_010036800.1	4.8e-04	62.79	PREDICTED: RPM1-interacting protein 4 [Eucalyptus grandis] >KCW48444.1 hypotheti...	[more]
GAY40081.1	6.3e-04	45.16	hypothetical protein CUMW_049260 [Citrus unshiu]	[more]

BLAST of Cla97C07G130320 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L950\|A0A0A0L950_CUCSA	2.0e-14	72.58	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G630240 PE=4 SV=1	[more]
tr\|M1CPC9\|M1CPC9_SOLTU	8.4e-05	48.44	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
tr\|M1CPD0\|M1CPD0_SOLTU	8.4e-05	48.44	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
tr\|M1CPD2\|M1CPD2_SOLTU	2.4e-04	45.16	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]
tr\|M1CPD1\|M1CPD1_SOLTU	2.4e-04	45.16	Uncharacterized protein OS=Solanum tuberosum OX=4113 GN=102596147 PE=4 SV=1	[more]

BLAST of Cla97C07G130320 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G130320 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008700	TypeIII_avirulence_cleave

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0010204	defense response signaling pathway, resistance gene-independent
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G130320.1	Cla97C07G130320.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 20..54 e-value: 1.5E-13 score: 49.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..77
None	No IPR available	PANTHER	PTHR33159	FAMILY NOT NAMED	coord: 20..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G130320	Cla002711	Watermelon (97103) v1	wmwmbB176
Cla97C07G130320	Csa3G630240	Cucumber (Chinese Long) v2	cuwmbB235
Cla97C07G130320	ClCG07G002040	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G130320	CSPI03G27610	Wild cucumber (PI 183967)	cpiwmbB244
Cla97C07G130320	Cucsa.150170	Cucumber (Gy14) v1	cgywmbB255
Cla97C07G130320	CmoCh02G017190	Cucurbita moschata (Rifu)	cmowmbB631
Cla97C07G130320	Lsi05G011250	Bottle gourd (USVL1VR-Ls)	lsiwmbB346
Cla97C07G130320	CsGy3G025660	Cucumber (Gy14) v2	cgybwmbB225
Cla97C07G130320	MELO3C030883.2	Melon (DHL92) v3.6.1	medwmbB334
Cla97C07G130320	Carg08897	Silver-seed gourd	carwmbB0821
Cla97C07G130320	Bhi05G000049	Wax gourd	wgowmbB261

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G130320	Watermelon (97103) v2	wmbwmbB141
Cla97C07G130320	Silver-seed gourd	carwmbB0299
Cla97C07G130320	Silver-seed gourd	carwmbB1011
Cla97C07G130320	Cucumber (Gy14) v2	cgybwmbB231
Cla97C07G130320	Cucumber (Gy14) v2	cgybwmbB523
Cla97C07G130320	Cucumber (Gy14) v1	cgywmbB077
Cla97C07G130320	Cucumber (Gy14) v1	cgywmbB456
Cla97C07G130320	Cucurbita maxima (Rimu)	cmawmbB273
Cla97C07G130320	Cucurbita maxima (Rimu)	cmawmbB540
Cla97C07G130320	Cucurbita maxima (Rimu)	cmawmbB657
Cla97C07G130320	Cucurbita moschata (Rifu)	cmowmbB253
Cla97C07G130320	Cucurbita moschata (Rifu)	cmowmbB521
Cla97C07G130320	Cucurbita moschata (Rifu)	cmowmbB841
Cla97C07G130320	Wild cucumber (PI 183967)	cpiwmbB250
Cla97C07G130320	Cucumber (Chinese Long) v3	cucwmbB238
Cla97C07G130320	Cucumber (Chinese Long) v3	cucwmbB573
Cla97C07G130320	Cucumber (Chinese Long) v2	cuwmbB241
Cla97C07G130320	Cucumber (Chinese Long) v2	cuwmbB550
Cla97C07G130320	Bottle gourd (USVL1VR-Ls)	lsiwmbB202
Cla97C07G130320	Bottle gourd (USVL1VR-Ls)	lsiwmbB347
Cla97C07G130320	Melon (DHL92) v3.6.1	medwmbB339
Cla97C07G130320	Melon (DHL92) v3.6.1	medwmbB445
Cla97C07G130320	Melon (DHL92) v3.5.1	mewmbB346
Cla97C07G130320	Melon (DHL92) v3.5.1	mewmbB351
Cla97C07G130320	Melon (DHL92) v3.5.1	mewmbB451
Cla97C07G130320	Watermelon (Charleston Gray)	wcgwmbB033
Cla97C07G130320	Watermelon (Charleston Gray)	wcgwmbB242
Cla97C07G130320	Watermelon (97103) v1	wmwmbB221