CSPI03G27610 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI03G27610
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRPM1 interacting protein 4
LocationChr3 : 25167690 .. 25172922 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTAAGCTACCATTCCTCCTCTTTTATCGATTTCACTATTTTACTCTGTATTTCTTTTTATACTCTGTTTGGCTGCTCTGAAAATCTCCGAGTTAGCGGGAAAATACAGAATGAGAGCTTTTTCAAAGTTTTCTTTCCGAACGGAACTATTCCAGCGAGATGTGTTTCTGCTTTTCGTTTACCCTAAACTGATTAGTTAAATTTCAGTATTTGATGAGTGATGATGAACCGAAACCGAATAGTTTTTGAAGATTAAATCAAGAACTGTTCAAAAGCTGAGATGTGAGATAGAACTAGAGTGCTTTCTAGATGTAATTTCAGAAATTAAAAATGGTTTTTCTGTCATAGTCCTCGTACGGTTCGAATTATTGCTTGTTTTTTAATGCTTTTTTCTTCTGTTCATATGCTGGGTTTTGACCTGACTTGTGGTGGGTTTCGCTTTGTGCTTATTTCTTGAAGAAGTGTTCAATCACGAGCATTTGAATTCAATTTTAGAATTAAATCATTGCTACTTTTGGGCCATTCTTCTAGTTCATCGTTATGAAAAAAGATTCGTCCATACTTGTATACATGTGGGGCTTTGGTCGTTTATTATTATTATTATTATTTTATATTTAAACTATTTTTGGGGTATATGACAATCAACTATTCTCTAATCAACCATCTATTTATTTGTTCTTATCTGCTGTATAGTCGTTTTTGGTTTTTTCCATTTTGAATCTTTCGAAAGGACTGTCTTTAGATATGTGTGATTTTTGTTGAATCCTTTACGAACTTCATTAAAATCAAGTTTAATACTCATCTTGTTAATGTTATAGTTCTCATATTGTCCATGTGAAAAAAGCTGACTATTTGTGCAAGACAGCTTAGGAAGATCATTCTTCTTATTCCACATTTGAATCTTCTCTTGTTCAAATACATTAGTTTTATATTATGATTGAACTTCTTGTATTTGCTGTTTTGACATTTGTGTTCAAATTTCTATGGTGTAAATTCTCGAAGGGAAAGGAACAACTATTAGGATTGACAATTATGTTATTTCATCTCAAGATTATTCATAGGCGTGAATTGAGAGTGGATTGTTTTGGATACCATTCAAGCTATTTTTGTGGTTGAAGTTGTCTTTTCTTTGGGGATCGGTTGGTAATATGCAATTGGATATAATGATTCCTCTAAACACTGTCTTGAAGTTTTATTTGTGTGCGTCTGTCGAGTCAGTTGTAGTTAATGATAATTGTTCACTTAAACCAATTTTACCAAATATGTCATCTGTTTTCAGCCAAGCCCAACAACTTCAGAAGTGATCAACCTCTAAACAGATTAACCTCTCTTAACAAACTCTTTTCAACTACTCTCAACCATTAACAAATAAAATAGGGTAACAAACTTCTCTGGTATAGTTATAAAAGTGGTTTGAAATTCTACTGACGGAAGTGTTCTTACATTTTATTTTGATGTGAATAAAATCTCTCGAAGGCTATTCGAAGTGGATGTAGGCTTCAAGAAAGCTGAACCACTATAAAACTTGCTGTATTCTTAGTCCTTTTGATGTCTTATTCCGAAACGATGAACTAAGAAACTTAGGAATAACAATAATAATAAATTATCTAGAGTCAGCTTGAGCGATCGCAAGTTCTTATTTTCAAGCAGGTCCTAAGTCCTAAGTAAGTATAGAGTTTGCTGTTGGAATCTTACAAAAGGTTTAGCAATTCTTAAAGGAGCGTTTGCAAAAATAACAAGAAAAATGTTAAGATAATAGAACTCATGTCTCTACGTTTTCTGAATTGCAAAAAAAAAGTAGTAAATTAAAGCTGTAATCCTTTTTTAACTCTTTGTTAGTCTTTAATAACTCTATGGTAGTAATTTGATATATCTAATTACTTGTCATATTTGGAATATGAAAAAAAAAAAGTGTTATGAACTGCTTTTTTTTTAAAAAAATTGTCATTAAATCACTGATTGACACTAAAATTTAAGCAGATGAAGGTGAATTTGATGGGATGTCATCTAACAACAATACATATATCTGATACCCCAATTAATCTATAGCTTTGCTTATTGGTAATTGACATGGTAATGAAATGGTTGCAAATGAAAGGATAACGAAGCTGCAGTTCCAAAATTTGGTGAATGGGATGATAGGGATGCAAAAGCACCGGAGAACTACACAGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGACGATTGACAGCACAAACAGCCAAAATCATGAACAGAATCAAAAGGTTAAGCTATCCTCCATTTCTAAAATTATTGAGATTGATATCCTTTGTCTTACATTATTGCCTGCCTTTAAAACTTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGAAAATGATATTGTTCTACATCTTCATTAGCTCAGTTTTACATGGACATGTGAATATATATTTTATTTGAAGGAAAGAATCTGTTGGGCTGCAACAAATATCCTTCTGTGCCATCTAATGTAAGTGTTTGTTTGTGGGCAAATAAAGTTCTGGGAAAAAGACAAAATCCGGGGTGTTTTGGGTATTATTTTTAATTATTACTTGAAATTTTTACTTTTGCTTGTGATGTATTCTTCACTCTAATAATTGTATTGTGAGGTTTGGCTTATTTTGGTTACTATTTATCTATCACCTTAGTTTATGATTGTATGATCATAGAAACCAACCAAACCGAACTAAACCTGAAATCCTGTTTTTATTAAAGTGGTGATTTTGTTAAGAAAACTAATGTTTTCGATTCAATTTTGTTTTAGATCTAGAAACCGAAACCAGGTTGTTTATGTTACATACATATATTTATGTTATATGCTATATATGGTATAAAACTAGATGATCTACTACATATAAAACCTAAAATTGAATCGAGTTTGAATATTTGGGGTTAGATTTGGAGTAAACAAACAGTTCAGGCTTTAGAGTTGGAAAACTTCACAAACTAATCCAATAACCAAAGAACTTTTTTTATGACAGATCCATTTCTCGTGACCTTTTTGCCATATGAAATATCAATTCTATCCTCTCTATCTTCAAATCCTTAATAAACCATTAGTTACTTTTTCTCTCTTCTACAAACTTGTCTGCAGTATAGAGTGAGATCCATGAAAACGAAGATAATCTAAGTTTTACGAAATATTTTTATTTCAAGATCGCATTTATGATAATAGGAGATGAAAGATAGTTTAATAAAACTTTGGAATAGTTCGAAGAAAGTTAGTAGATTATTTAATAAAAGTTGGGAGACCGTTTGATAAAAATTGGAAGATCGATTAATAAAAATTAAAACTTAGGTTATTTTATCTACTATTTTTTCTTTTATGTTTTTTTTTTTCATTTGGTGTCTATTTATTCACCTTTACACTAAATTGATTATGTACTCTGAATTATTAAAAAATAACATATAATGCAACATTCGTCTCAAATGGCTTATGTTTGGGTTAATTAAATATGCATAAATGGACTTGATATTAAAAGTCAACCAATCGTATACTCACATTTTCAGAAAGCGGTCAAGGATTTGACTATCAAGTATCCTATGATCATTTGATAAAAAAAAAACGTCAGATTATATATTTTCTTACATATTTTTCGTGTCAACCTACAACACTAAAAATAAATACTAAAGTAGACCGAGTTAGAAACATAAAAAACTCGAGATTCAAATCAACGGGAGTGGTAAAAAAGAATGACCTGAGATGCTAAAATAGTAATGGAGTATACATAAGTCTTACTGATGTCAAGCTTAAGTGCCCTTTGTTCCTAAAACCCGTCCGGAAAGGAGAACAATTTGAAAGAGAGAAAATGATTGAGTGGAAACTCTTTCTTAAACTGATTTTTTGCAGGAGATTTTAAAATGAACTCTTACATTACCAAATCATAAAAGACTGTGGGATGGTCGATGAATCATAGGAAATTAATACAGTTTACAACCTTTCAATTGGTTTCAAAATCGAGAGTGAGAGTGTTGTAAGAAAAAACAAACAAGGTCGGTGACGTAGGCACGTGCGATAGAAAGAAGGGAAGAAAGCAAATAAACACGTGTCACGCAACTATTGGACATGAGCAAAAGACGTGGCGCCTTTCAGGCTCGGCTCCTCTTTCACTGTCCCCGCAAGAACCCTGGAACTTCCCCTCTGCCGTGTCTCCATTCTCGTCCTCAATCTCAACCTTTTTCTTCATTTCTCCCTTTATAATGCCGATTTTCCCTTCTCTATCCTTTCCATCTCTCAACCTTTAGAATCCTAACTACGAATATCACAAACCCTAGAAGAACTAATCATATAATCAAATCTAATCTATCAACCACCTCAAATTTGCAAGATATTTTTTTCAACCGCTTATTTCAGGTACCCCATCTTCAGATTCGACGTATTTTATTTAATTTTTTAATTGGGGTATCTTCTTTAATCGATCTTAGTTATGATTTCTGGGGTTTATTTTTGGAGAAAAAATGTCTTTGTGAATGTTTTGACCGATGTGAGATTGAAGACTTGACGTTTTGGTTCCTGTAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTATGAATTTTGTGGTTTAGTGTAAGCCGTATGATTAATCCCAAGGTTTGATGTATTTTAATTGTTTGGTGTAACTGATTATTAATGAATGTTTAGGGGGAAAGGGTAGTGGTTGATTTATTATCGATGTGGGGTTTTCTTTTTAATTATAAATCTGGGAACGAAGGGTTTGTTGTTTGACAAGGATTATATTGATGTCTTGGTTCTGAGTTACAGGGATTTGTTTCTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCGAATCTCCTTGTGTTTATTGCATGACTACAGTTCACGCTCATGGTTGTGGTTTTTCTCTCTGTTGAAAGCCATCAATTTCTTTCTTAAAATTTCCTTTGTTCACTTTATTTTACATGATACATCAGCTGGGGTCTTATTGCATTCAGATTTTGAATATATTGGGCTTATGTATTGCAGGTTGCTGGGGAGCTTGAAAATATAGATGAGTACTCAGGCTATGAGGGGACATACCACAAGAGGTTATCATCGTAG

mRNA sequence

ATGGCTGATAACGAAGCTGCAGTTCCAAAATTTGGTGAATGGGATGATAGGGATGCAAAAGCACCGGAGAACTACACAGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGACGATTGACAGCACAAACAGCCAAAATCATGAACAGAATCAAAAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTTGCTGGGGAGCTTGAAAATATAGATGAGTACTCAGGCTATGAGGGGACATACCACAAGAGGTTATCATCGTAG

Coding sequence (CDS)

ATGGCTGATAACGAAGCTGCAGTTCCAAAATTTGGTGAATGGGATGATAGGGATGCAAAAGCACCGGAGAACTACACAGCTATTTTCAACAAGGTGCGGGAAGAGCGGCAAGATCAAACAGTGCGAGGGACACCAACACGGACGATTGACAGCACAAACAGCCAAAATCATGAACAGAATCAAAAGTTGGGGCAAAAGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTTGCTGGGGAGCTTGAAAATATAGATGAGTACTCAGGCTATGAGGGGACATACCACAAGAGGTTATCATCGTAG
Homology
[Close]
BLAST of CSPI03G27610 vs. TrEMBL
Match: A0A0A0L950_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630240 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.8e-52
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 1 

Query: 1   MADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQN 60
           MADNE AVPKFGEWDD DAKAPENYTAIFNKVREERQDQTVRGTPTR IDSTNSQNHEQN
Sbjct: 1   MADNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDSTNSQNHEQN 60

Query: 61  QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS 106
           QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS
Sbjct: 61  QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS 105

[Close]
BLAST of CSPI03G27610 vs. TrEMBL
Match: K4CTM8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-07
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNK REE+Q     GTP+RT ++T   N E+ Q
Sbjct: 188 SDRGAAVPRFGEWDENDPQSADNYTHIFNKFREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 247

Query: 62  K 63
           +
Sbjct: 248 R 247

[Close]
BLAST of CSPI03G27610 vs. TrEMBL
Match: M1CPD1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 189 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 247

[Close]
BLAST of CSPI03G27610 vs. TrEMBL
Match: M1CPC8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 190 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 248

[Close]
BLAST of CSPI03G27610 vs. TrEMBL
Match: M1CPD0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNKVREE+Q     GTP+R  ++T   N E+ Q
Sbjct: 189 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRASNNTQKHNSEEKQ 247

[Close]
BLAST of CSPI03G27610 vs. NCBI nr
Match: gi|700203235|gb|KGN58368.1| (hypothetical protein Csa_3G630240 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.5e-52
Identity = 102/105 (97.14%), Postives = 102/105 (97.14%), Query Frame = 1 

Query: 1   MADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQN 60
           MADNE AVPKFGEWDD DAKAPENYTAIFNKVREERQDQTVRGTPTR IDSTNSQNHEQN
Sbjct: 1   MADNETAVPKFGEWDDGDAKAPENYTAIFNKVREERQDQTVRGTPTRLIDSTNSQNHEQN 60

Query: 61  QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS 106
           QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS
Sbjct: 61  QKLGQKIRWSRYCLEMDFYDRVAGELENIDEYSGYEGTYHKRLSS 105

[Close]
BLAST of CSPI03G27610 vs. NCBI nr
Match: gi|970050067|ref|XP_015086554.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum pennellii])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNKVREE+Q     GTP+RT ++T   N E+ Q
Sbjct: 188 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 247

Query: 62  K 63
           +
Sbjct: 248 R 247

[Close]
BLAST of CSPI03G27610 vs. NCBI nr
Match: gi|970050065|ref|XP_015086553.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum pennellii])

HSP 1 Score: 65.9 bits (159), Expect = 5.0e-08
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNKVREE+Q     GTP+RT ++T   N E+ Q
Sbjct: 189 SDRGAAVPRFGEWDENDPQSADNYTHIFNKVREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 248

Query: 62  K 63
           +
Sbjct: 249 R 248

[Close]
BLAST of CSPI03G27610 vs. NCBI nr
Match: gi|723729898|ref|XP_010326285.1| (PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum lycopersicum])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNK REE+Q     GTP+RT ++T   N E+ Q
Sbjct: 188 SDRGAAVPRFGEWDENDPQSADNYTHIFNKFREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 247

Query: 62  K 63
           +
Sbjct: 248 R 247

[Close]
BLAST of CSPI03G27610 vs. NCBI nr
Match: gi|723729895|ref|XP_010326284.1| (PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum lycopersicum])

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1 

Query: 2   ADNEAAVPKFGEWDDRDAKAPENYTAIFNKVREERQDQTVRGTPTRTIDSTNSQNHEQNQ 61
           +D  AAVP+FGEWD+ D ++ +NYT IFNK REE+Q     GTP+RT ++T   N E+ Q
Sbjct: 189 SDRGAAVPRFGEWDENDPQSADNYTHIFNKFREEKQGNP-SGTPSRTSNNTQKHNSEEKQ 248

Query: 62  K 63
           +
Sbjct: 249 R 248

The following BLAST results are available for this feature:
BLAST of CSPI03G27610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI03G27610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L950_CUCSA1.8e-5297.14Uncharacterized protein OS=Cucumis sativus GN=Csa_3G630240 PE=4 SV=1[more]
K4CTM8_SOLLC1.3e-0750.82Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
M1CPD1_SOLTU2.3e-0751.67Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1[more]
M1CPC8_SOLTU2.3e-0751.67Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1[more]
M1CPD0_SOLTU2.3e-0751.67Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400027945 PE=4 SV=1[more]
BLAST of CSPI03G27610 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI03G27610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700203235|gb|KGN58368.1|2.5e-5297.14hypothetical protein Csa_3G630240 [Cucumis sativus][more]
gi|970050067|ref|XP_015086554.1|5.0e-0852.46PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum pennellii][more]
gi|970050065|ref|XP_015086553.1|5.0e-0852.46PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum pennellii][more]
gi|723729898|ref|XP_010326285.1|1.9e-0750.82PREDICTED: RPM1-interacting protein 4 isoform X2 [Solanum lycopersicum][more]
gi|723729895|ref|XP_010326284.1|1.9e-0750.82PREDICTED: RPM1-interacting protein 4 isoform X1 [Solanum lycopersicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008700TypeIII_avirulence_cleave
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G27610.1CSPI03G27610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 3..37
score: 1.2
NoneNo IPR availablePANTHERPTHR33159FAMILY NOT NAMEDcoord: 3..83
score: 8.9
NoneNo IPR availablePANTHERPTHR33159:SF6RPM1-INTERACTING PROTEIN 4coord: 3..83
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI03G27610Csa3G630240Cucumber (Chinese Long) v2cpicuB120
CSPI03G27610ClCG07G002040Watermelon (Charleston Gray)cpiwcgB258
CSPI03G27610Lsi05G011250Bottle gourd (USVL1VR-Ls)cpilsiB199
CSPI03G27610MELO3C030883.2Melon (DHL92) v3.6.1cpimedB194
CSPI03G27610Cla97C07G130320Watermelon (97103) v2cpiwmbB244
CSPI03G27610Bhi05G000049Wax gourdcpiwgoB309
CSPI03G27610Cucsa.150170Cucumber (Gy14) v1cgycpiB221
CSPI03G27610CmoCh02G017190Cucurbita moschata (Rifu)cmocpiB595
CSPI03G27610Cp4.1LG05g00710Cucurbita pepo (Zucchini)cpecpiB718
CSPI03G27610CsGy3G025660Cucumber (Gy14) v2cgybcpiB110
CSPI03G27610Carg08897Silver-seed gourdcarcpiB0816
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI03G27610Watermelon (97103) v2cpiwmbB229
CSPI03G27610Wild cucumber (PI 183967)cpicpiB104
CSPI03G27610Cucumber (Gy14) v1cgycpiB078
CSPI03G27610Cucumber (Gy14) v1cgycpiB381
CSPI03G27610Cucurbita maxima (Rimu)cmacpiB516
CSPI03G27610Cucurbita maxima (Rimu)cmacpiB606
CSPI03G27610Cucurbita moschata (Rifu)cmocpiB239
CSPI03G27610Cucurbita moschata (Rifu)cmocpiB506
CSPI03G27610Cucurbita moschata (Rifu)cmocpiB829
CSPI03G27610Cucumber (Chinese Long) v2cpicuB166
CSPI03G27610Melon (DHL92) v3.5.1cpimeB200
CSPI03G27610Melon (DHL92) v3.5.1cpimeB248
CSPI03G27610Watermelon (Charleston Gray)cpiwcgB189
CSPI03G27610Watermelon (Charleston Gray)cpiwcgB247
CSPI03G27610Watermelon (97103) v1cpiwmB225
CSPI03G27610Watermelon (97103) v1cpiwmB252
CSPI03G27610Cucurbita pepo (Zucchini)cpecpiB242
CSPI03G27610Cucurbita pepo (Zucchini)cpecpiB610
CSPI03G27610Cucurbita pepo (Zucchini)cpecpiB858
CSPI03G27610Bottle gourd (USVL1VR-Ls)cpilsiB175
CSPI03G27610Bottle gourd (USVL1VR-Ls)cpilsiB201
CSPI03G27610Melon (DHL92) v3.6.1cpimedB242
CSPI03G27610Cucumber (Gy14) v2cgybcpiB121
CSPI03G27610Cucumber (Gy14) v2cgybcpiB316
CSPI03G27610Silver-seed gourdcarcpiB0325
CSPI03G27610Silver-seed gourdcarcpiB0997
CSPI03G27610Cucumber (Chinese Long) v3cpicucB144