CmoCh02G013510 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G013510
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Ccr4-associated factor, putative) (3.1.13.4)
LocationCmo_Chr02 : 8044419 .. 8045231 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTAATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

mRNA sequence

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTAATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Coding sequence (CDS)

ATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTAATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTCGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA
Homology
[Close]
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 4.4e-109
Identity = 195/271 (71.96%), Postives = 226/271 (83.39%), Query Frame = 1 

Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR---PSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +      R   P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.7e-109
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 1 

Query: 13  REVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 4.3e-80
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.0e-78
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-FHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 290.4 bits (742), Expect = 2.0e-77
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-FHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYFP-RVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 250 RDVYFGKDGPEKHAGVLYGLEV 270
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]
BLAST of CmoCh02G013510 vs. TrEMBL
Match: A0A061GVA7_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobroma cacao GN=TCM_041300 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 1.4e-122
Identity = 209/271 (77.12%), Postives = 235/271 (86.72%), Query Frame = 1 

Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP-------SD 66
           S P+ +REVW  NL  EF LI++++D YPFISMDTEFPG+V++P   PSRP       SD
Sbjct: 10  SKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRPYHSQLQPSD 69

Query: 67  HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 126
           HY  LKSNVDALNLIQVGLTLSD+ GNLP LGTD +FIWEFNF DFDV RD HAPDSI+L
Sbjct: 70  HYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTDTQFIWEFNFSDFDVERDAHAPDSIEL 129

Query: 127 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 186
           L+RQGIDFE+NR  G+DS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP
Sbjct: 130 LRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELP 189

Query: 187 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 246
             LDEFL+IL+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 247 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 250 TWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of CmoCh02G013510 vs. TrEMBL
Match: F6HHC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01090 PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 8.6e-120
Identity = 210/269 (78.07%), Postives = 231/269 (85.87%), Query Frame = 1 

Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-----FHPSRPSDHY 66
           S P+ +REVW  NL  EF LI+ L+D+YPFISMDTEFPGVV RP+     F   RPSDHY
Sbjct: 10  SKPVMIREVWAENLESEFELISDLIDQYPFISMDTEFPGVVFRPSGGEQQFRLRRPSDHY 69

Query: 67  LLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLK 126
             LKSNVDAL LIQVGLTLSDA+GNLP LGT  RFIWEFNFRDFDV RD HAPDSI+LL 
Sbjct: 70  RFLKSNVDALCLIQVGLTLSDANGNLPDLGTGNRFIWEFNFRDFDVARDAHAPDSIELLS 129

Query: 127 RQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSR 186
           RQGIDF+RNR  GVDSARF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR LPS 
Sbjct: 130 RQGIDFDRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 189

Query: 187 LDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTW 246
           L+EFL IL+ FFG KVYDVKH+M+FC SLYGGL+RVA+TL VDRAVGKCHQAGSDSLLTW
Sbjct: 190 LEEFLSILRVFFGTKVYDVKHLMKFCASLYGGLDRVARTLEVDRAVGKCHQAGSDSLLTW 249

Query: 247 HAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           HAFQK+RDVYF KDG EK+AGVLYGLEV+
Sbjct: 250 HAFQKIRDVYFEKDGTEKYAGVLYGLEVF 278

[Close]
BLAST of CmoCh02G013510 vs. TrEMBL
Match: W9RQ69_9ROSA (Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016319 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.3e-119
Identity = 210/270 (77.78%), Postives = 234/270 (86.67%), Query Frame = 1 

Query: 9   PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS-------RPSDHY 68
           PI +REVW  NL  EF LI  L+DR+P+ISMDTEFPGVV R  F  S       RPSDHY
Sbjct: 12  PIVIREVWASNLEAEFELIGDLIDRFPYISMDTEFPGVVYRATFDQSKPYAYRLRPSDHY 71

Query: 69  LLLKSNVDALNLIQVGLTLSDADGNLPTL-GTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 128
            +LKSNVDAL+LIQVGLTLSDADGNLP L G + RFIWEFNFRDFDV RDLHAPDSI+LL
Sbjct: 72  RVLKSNVDALSLIQVGLTLSDADGNLPDLEGGESRFIWEFNFRDFDVARDLHAPDSIELL 131

Query: 129 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 188
           KRQGIDF+RNR+ G+DSARF+EL+MSSGL+CN +VSWVTFHSAYDFGYLVKILTRR LP 
Sbjct: 132 KRQGIDFDRNRSEGIDSARFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRCLPG 191

Query: 189 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 248
            L +FLKIL+AFFG++VYDVKHMMRFC+SLYGGL+RVAKTL V+R VGKCHQAGSDSLLT
Sbjct: 192 ALADFLKILRAFFGDRVYDVKHMMRFCNSLYGGLDRVAKTLEVNRVVGKCHQAGSDSLLT 251

Query: 249 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           WHAFQK+RDVYF  DGPEKHAGVLYGLEV+
Sbjct: 252 WHAFQKIRDVYFVTDGPEKHAGVLYGLEVF 281

[Close]
BLAST of CmoCh02G013510 vs. TrEMBL
Match: B9MYV0_POPTR (CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_0004s21070g PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 7.3e-119
Identity = 208/273 (76.19%), Postives = 230/273 (84.25%), Query Frame = 1 

Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS---------RP 66
           S  I +REVW  NL  EF LI  L+D +PFISMDTEFPGVV RP   P+         +P
Sbjct: 4   SKEIVIREVWSCNLESEFELIRDLIDEFPFISMDTEFPGVVFRPPVDPTNNRNYFRQLKP 63

Query: 67  SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSI 126
           SDHY +LKSNVDALNLIQVGLTLSDA+GNLP LGT  RFIWEFNFRDFDV RD HAPDSI
Sbjct: 64  SDHYKILKSNVDALNLIQVGLTLSDAEGNLPDLGTGNRFIWEFNFRDFDVERDSHAPDSI 123

Query: 127 DLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRK 186
           +LL+RQGIDFERNR  GVDSARF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+
Sbjct: 124 ELLRRQGIDFERNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRE 183

Query: 187 LPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDS 246
           LPS L  FL +L+ FFGN +YDVKHMMRFC SLYGGL+RVA+TL V+R VGKCHQAGSDS
Sbjct: 184 LPSGLVGFLSLLRVFFGNNIYDVKHMMRFCKSLYGGLDRVARTLEVNREVGKCHQAGSDS 243

Query: 247 LLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           LLTWHAFQKMRDV+F KDGPE+HAGVLYGLEV+
Sbjct: 244 LLTWHAFQKMRDVFFVKDGPEQHAGVLYGLEVF 276

[Close]
BLAST of CmoCh02G013510 vs. TrEMBL
Match: A0A0A0KI60_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425790 PE=4 SV=1)

HSP 1 Score: 433.7 bits (1114), Expect = 1.6e-118
Identity = 205/263 (77.95%), Postives = 229/263 (87.07%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFH--PSRPSDHYLLLKSN 69
           I  R+VWD NL HEF LI +L+ RYPFIS+DTEFPGV++RP  H  P RPSDHYLLLKSN
Sbjct: 3   IQTRQVWDLNLLHEFNLITQLLHRYPFISIDTEFPGVLIRPTLHRHPLRPSDHYLLLKSN 62

Query: 70  VDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           VDALNLIQ+GLTLSDA GNLPTLGT   FIWEFNFRDFDV RD HAPDSI+LLK+QGIDF
Sbjct: 63  VDALNLIQLGLTLSDAHGNLPTLGTKNSFIWEFNFRDFDVARDPHAPDSIELLKQQGIDF 122

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
            RNR HGV S+RF++L+MSSGLLCN S++WVTFHSAYDFGYLVKILTR KLPSRL +FL 
Sbjct: 123 HRNRTHGVCSSRFADLVMSSGLLCNDSLTWVTFHSAYDFGYLVKILTRTKLPSRLQDFLN 182

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           ILK  FG KVYDVKHMMRFCD LYGGL+R+AKTL +DRAVGK HQAGSDSLLT+ AF+KM
Sbjct: 183 ILKGLFGKKVYDVKHMMRFCDGLYGGLDRLAKTLDLDRAVGKSHQAGSDSLLTFQAFKKM 242

Query: 250 RDVYFGKDGPEKHAGVLYGLEVY 271
            DVYF KDGP+KHAGVL+GLE+Y
Sbjct: 243 SDVYFSKDGPDKHAGVLFGLELY 265

[Close]
BLAST of CmoCh02G013510 vs. TAIR10
Match: AT5G22250.1 (AT5G22250.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 395.6 bits (1015), Expect = 2.5e-110
Identity = 195/271 (71.96%), Postives = 226/271 (83.39%), Query Frame = 1 

Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR---PSDHYL 65
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +      R   P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 66  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 125
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 126 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 185
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 186 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 245
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 246 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]
BLAST of CmoCh02G013510 vs. TAIR10
Match: AT3G44260.1 (AT3G44260.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 395.2 bits (1014), Expect = 3.2e-110
Identity = 186/261 (71.26%), Postives = 219/261 (83.91%), Query Frame = 1 

Query: 13  REVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALN 72
           REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P D Y LLK+NVDAL+
Sbjct: 20  REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNPDDLYTLLKANVDALS 79

Query: 73  LIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERN 132
           LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPDSI+LL+RQGIDFERN
Sbjct: 80  LIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERN 139

Query: 133 RAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILK 192
              GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTRR+LP  L EF ++++
Sbjct: 140 CRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTRRELPGALGEFKRVMR 199

Query: 193 AFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 252
             FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAGSDSLLTWHAFQ+MRD
Sbjct: 200 VLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAGSDSLLTWHAFQRMRD 259

Query: 253 VYFGKDGPEKHAGVLYGLEVY 271
           +YF +DGPEKHAGVLYGLEV+
Sbjct: 260 LYFVQDGPEKHAGVLYGLEVF 280

[Close]
BLAST of CmoCh02G013510 vs. TAIR10
Match: AT5G10960.1 (AT5G10960.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-81
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 69
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 250 DVYFGKDGPEKHAGVLYGLEV 270
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]
BLAST of CmoCh02G013510 vs. TAIR10
Match: AT1G80780.3 (AT1G80780.3 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-FHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 129
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 130 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 189
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 190 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 249
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 250 DVYFGKDGP-EKHAGVLYGLEV 270
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]
BLAST of CmoCh02G013510 vs. TAIR10
Match: AT2G32070.1 (AT2G32070.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 290.4 bits (742), Expect = 1.1e-78
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 1 

Query: 10  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-FHPSRPSDHYLLLKSNV 69
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 70  DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 129
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 130 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 189
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 190 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 249
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYFP-RVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 250 RDVYFGKDGPEKHAGVLYGLEV 270
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]
BLAST of CmoCh02G013510 vs. NCBI nr
Match: gi|590586505|ref|XP_007015724.1| (Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao])

HSP 1 Score: 447.2 bits (1149), Expect = 2.0e-122
Identity = 209/271 (77.12%), Postives = 235/271 (86.72%), Query Frame = 1 

Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP-------SD 66
           S P+ +REVW  NL  EF LI++++D YPFISMDTEFPG+V++P   PSRP       SD
Sbjct: 10  SKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRPYHSQLQPSD 69

Query: 67  HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 126
           HY  LKSNVDALNLIQVGLTLSD+ GNLP LGTD +FIWEFNF DFDV RD HAPDSI+L
Sbjct: 70  HYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTDTQFIWEFNFSDFDVERDAHAPDSIEL 129

Query: 127 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 186
           L+RQGIDFE+NR  G+DS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP
Sbjct: 130 LRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELP 189

Query: 187 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 246
             LDEFL+IL+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 247 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           TWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 250 TWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]
BLAST of CmoCh02G013510 vs. NCBI nr
Match: gi|694388425|ref|XP_009369921.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Pyrus x bretschneideri])

HSP 1 Score: 439.9 bits (1130), Expect = 3.2e-120
Identity = 209/273 (76.56%), Postives = 233/273 (85.35%), Query Frame = 1 

Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS--------RP 65
           +  PI +REVW  NL  EF LI  ++D YPFISMDTEFPGVV RP   P+        RP
Sbjct: 11  IQKPIVIREVWAHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPPVDPTTPYSRQALRP 70

Query: 66  SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSI 125
           SDHY +LKSNVDAL+LIQVGLTLSD+ GNLP LG+  RFIWEFNF DFDV RD HAPDSI
Sbjct: 71  SDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDVARDPHAPDSI 130

Query: 126 DLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRK 185
           +LL+RQGIDF+RNR+HGVDS+RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR 
Sbjct: 131 ELLRRQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRD 190

Query: 186 LPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDS 245
           LPS L+EFLKIL+ FFGN+VYDVKHMMRFC SLYGGL+RVA+TL VDRAVGKCHQAGSDS
Sbjct: 191 LPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDS 250

Query: 246 LLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           LLTWHAFQKMRDVYF   GPE+HAGVLYGLEV+
Sbjct: 251 LLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF 283

[Close]
BLAST of CmoCh02G013510 vs. NCBI nr
Match: gi|658013956|ref|XP_008342289.1| (PREDICTED: probable CCR4-associated factor 1 homolog 11 [Malus domestica])

HSP 1 Score: 439.5 bits (1129), Expect = 4.2e-120
Identity = 209/273 (76.56%), Postives = 233/273 (85.35%), Query Frame = 1 

Query: 6   LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS--------RP 65
           +  PI +REVW  NL  EF LI  ++D YPFISMDTEFPGVV RP   P+        RP
Sbjct: 11  IQKPIVIREVWAHNLESEFELIQNVIDAYPFISMDTEFPGVVFRPXVDPTSPYSRQTLRP 70

Query: 66  SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSI 125
           SDHY +LKSNVDAL+LIQVGLTLSD+ GNLP LG+  RFIWEFNF DFDV RD HAPDSI
Sbjct: 71  SDHYRILKSNVDALSLIQVGLTLSDSRGNLPDLGSPTRFIWEFNFNDFDVXRDPHAPDSI 130

Query: 126 DLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRK 185
           +LL+RQGIDF+RNR+HGVDS+RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR 
Sbjct: 131 ELLRRQGIDFDRNRSHGVDSSRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRD 190

Query: 186 LPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDS 245
           LPS L+EFLKIL+ FFGN+VYDVKHMMRFC SLYGGL+RVA+TL VDRAVGKCHQAGSDS
Sbjct: 191 LPSGLNEFLKILRVFFGNRVYDVKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDS 250

Query: 246 LLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           LLTWHAFQKMRDVYF   GPE+HAGVLYGLEV+
Sbjct: 251 LLTWHAFQKMRDVYFVHGGPEQHAGVLYGLEVF 283

[Close]
BLAST of CmoCh02G013510 vs. NCBI nr
Match: gi|1009174523|ref|XP_015868387.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba])

HSP 1 Score: 438.7 bits (1127), Expect = 7.2e-120
Identity = 206/268 (76.87%), Postives = 231/268 (86.19%), Query Frame = 1 

Query: 9   PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP------AFHPSRPSDHYL 68
           PI +REVW  NL  EF+LI  L+D +PFISMDTEFPG+V RP           RPSDHYL
Sbjct: 22  PIAIREVWAHNLEAEFQLIRNLIDDFPFISMDTEFPGLVFRPPPQLDPTMRRLRPSDHYL 81

Query: 69  LLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKR 128
           LLKSNVDALNLIQVGLTLSD+ GNLP LG+  RFIWEFNF DFDV+RD HAPDSIDLL+R
Sbjct: 82  LLKSNVDALNLIQVGLTLSDSLGNLPDLGSHNRFIWEFNFSDFDVSRDAHAPDSIDLLRR 141

Query: 129 QGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRL 188
           QGIDF+RNR  G+DS RF+EL+MSSGL+CN +VSWVTFHSAYDFGYLVKILTRR LP R+
Sbjct: 142 QGIDFDRNRDEGIDSRRFAELMMSSGLVCNDAVSWVTFHSAYDFGYLVKILTRRSLPGRM 201

Query: 189 DEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWH 248
           +EFL++L+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL VDRAVGKCHQAGSDSLLTWH
Sbjct: 202 EEFLRVLRVFFGNRVYDIKHMMRFCKSLYGGLDRVARTLEVDRAVGKCHQAGSDSLLTWH 261

Query: 249 AFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           AFQKMRDVYF  DGPEKHAGVLYGLEV+
Sbjct: 262 AFQKMRDVYFVNDGPEKHAGVLYGLEVF 289

[Close]
BLAST of CmoCh02G013510 vs. NCBI nr
Match: gi|225464848|ref|XP_002271636.1| (PREDICTED: probable CCR4-associated factor 1 homolog 9 [Vitis vinifera])

HSP 1 Score: 438.0 bits (1125), Expect = 1.2e-119
Identity = 210/269 (78.07%), Postives = 231/269 (85.87%), Query Frame = 1 

Query: 7   SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPA-----FHPSRPSDHY 66
           S P+ +REVW  NL  EF LI+ L+D+YPFISMDTEFPGVV RP+     F   RPSDHY
Sbjct: 10  SKPVMIREVWAENLESEFELISDLIDQYPFISMDTEFPGVVFRPSGGEQQFRLRRPSDHY 69

Query: 67  LLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLK 126
             LKSNVDAL LIQVGLTLSDA+GNLP LGT  RFIWEFNFRDFDV RD HAPDSI+LL 
Sbjct: 70  RFLKSNVDALCLIQVGLTLSDANGNLPDLGTGNRFIWEFNFRDFDVARDAHAPDSIELLS 129

Query: 127 RQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSR 186
           RQGIDF+RNR  GVDSARF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR LPS 
Sbjct: 130 RQGIDFDRNREEGVDSARFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSG 189

Query: 187 LDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTW 246
           L+EFL IL+ FFG KVYDVKH+M+FC SLYGGL+RVA+TL VDRAVGKCHQAGSDSLLTW
Sbjct: 190 LEEFLSILRVFFGTKVYDVKHLMKFCASLYGGLDRVARTLEVDRAVGKCHQAGSDSLLTW 249

Query: 247 HAFQKMRDVYFGKDGPEKHAGVLYGLEVY 271
           HAFQK+RDVYF KDG EK+AGVLYGLEV+
Sbjct: 250 HAFQKIRDVYFEKDGTEKYAGVLYGLEVF 278

The following BLAST results are available for this feature:
BLAST of CmoCh02G013510 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAF1K_ARATH4.4e-10971.96Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 ... [more]
CAF1I_ARATH5.7e-10971.26Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE... [more]
CAF1J_ARATH4.3e-8055.17Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 ... [more]
CAF1F_ARATH4.0e-7854.96Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE... [more]
CAF1G_ARATH2.0e-7753.82Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE... [more]
BLAST of CmoCh02G013510 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A061GVA7_THECC1.4e-12277.12Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobrom... [more]
F6HHC1_VITVI8.6e-12078.07Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01090 PE=4 SV=... [more]
W9RQ69_9ROSA7.3e-11977.78Putative CCR4-associated factor 1-11-like protein OS=Morus notabilis GN=L484_016... [more]
B9MYV0_POPTR7.3e-11976.19CCR4-NOT transcription complex family protein OS=Populus trichocarpa GN=POPTR_00... [more]
A0A0A0KI60_CUCSA1.6e-11877.95Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425790 PE=4 SV=1[more]
BLAST of CmoCh02G013510 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22250.12.5e-11071.96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT3G44260.13.2e-11071.26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT5G10960.12.4e-8155.17 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT1G80780.32.3e-7954.96 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
AT2G32070.11.1e-7853.82 Polynucleotidyl transferase, ribonuclease H-like superfamily protein[more]
BLAST of CmoCh02G013510 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|590586505|ref|XP_007015724.1|2.0e-12277.12Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma ... [more]
gi|694388425|ref|XP_009369921.1|3.2e-12076.56PREDICTED: probable CCR4-associated factor 1 homolog 11 [Pyrus x bretschneideri][more]
gi|658013956|ref|XP_008342289.1|4.2e-12076.56PREDICTED: probable CCR4-associated factor 1 homolog 11 [Malus domestica][more]
gi|1009174523|ref|XP_015868387.1|7.2e-12076.87PREDICTED: probable CCR4-associated factor 1 homolog 9 [Ziziphus jujuba][more]
gi|225464848|ref|XP_002271636.1|1.2e-11978.07PREDICTED: probable CCR4-associated factor 1 homolog 9 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051252 regulation of RNA metabolic process
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0008152 metabolic process
biological_process GO:0043928 exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
biological_process GO:0017148 negative regulation of translation
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0030015 CCR4-NOT core complex
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0016740 transferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G013510.1CmoCh02G013510.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 18..135
score: 2.6E-7coord: 158..240
score: 5.
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 3..268
score: 7.5E
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 8..269
score: 6.14
NoneNo IPR availablePANTHERPTHR10797CCR4-NOT TRANSCRIPTION COMPLEX SUBUNITcoord: 1..269
score: 2.4E
NoneNo IPR availablePANTHERPTHR10797:SF3CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATEDcoord: 1..269
score: 2.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G013510Cucsa.185830Cucumber (Gy14) v1cgycmoB0533
CmoCh02G013510CmaCh02G013110Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G013510Cla008626Watermelon (97103) v1cmowmB585
CmoCh02G013510Csa1G168920Cucumber (Chinese Long) v2cmocuB569
CmoCh02G013510Csa6G425790Cucumber (Chinese Long) v2cmocuB620
CmoCh02G013510MELO3C014512Melon (DHL92) v3.5.1cmomeB561
CmoCh02G013510ClCG02G022360Watermelon (Charleston Gray)cmowcgB538
CmoCh02G013510CSPI06G23350Wild cucumber (PI 183967)cmocpiB627
CmoCh02G013510Cp4.1LG05g04040Cucurbita pepo (Zucchini)cmocpeB594
CmoCh02G013510Cp4.1LG05g04420Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G013510MELO3C014512.2Melon (DHL92) v3.6.1cmomedB642
CmoCh02G013510CsaV3_6G038490Cucumber (Chinese Long) v3cmocucB0740
CmoCh02G013510Cla97C02G048450Watermelon (97103) v2cmowmbB602
CmoCh02G013510Cla97C01G011260Watermelon (97103) v2cmowmbB578
CmoCh02G013510Bhi10G000136Wax gourdcmowgoB0747
CmoCh02G013510CsGy6G022590Cucumber (Gy14) v2cgybcmoB798
CmoCh02G013510CsGy1G014850Cucumber (Gy14) v2cgybcmoB113
CmoCh02G013510Carg02650Silver-seed gourdcarcmoB1237
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G013510Bottle gourd (USVL1VR-Ls)cmolsiB525
CmoCh02G013510Bottle gourd (USVL1VR-Ls)cmolsiB546
CmoCh02G013510Cucumber (Gy14) v2cgybcmoB378
CmoCh02G013510Silver-seed gourdcarcmoB0335
CmoCh02G013510Silver-seed gourdcarcmoB0348
CmoCh02G013510Silver-seed gourdcarcmoB0560
CmoCh02G013510Cucumber (Chinese Long) v3cmocucB0708
CmoCh02G013510Cucumber (Chinese Long) v3cmocucB0748
CmoCh02G013510Watermelon (97103) v2cmowmbB620
CmoCh02G013510Cucurbita moschata (Rifu)cmocmoB214
CmoCh02G013510Cucurbita moschata (Rifu)cmocmoB405
CmoCh02G013510Cucurbita moschata (Rifu)cmocmoB430
CmoCh02G013510Cucurbita moschata (Rifu)cmocmoB443
CmoCh02G013510Cucumber (Gy14) v1cgycmoB0147
CmoCh02G013510Cucurbita maxima (Rimu)cmacmoB555
CmoCh02G013510Cucurbita maxima (Rimu)cmacmoB651
CmoCh02G013510Cucurbita maxima (Rimu)cmacmoB856
CmoCh02G013510Wild cucumber (PI 183967)cmocpiB639
CmoCh02G013510Cucumber (Chinese Long) v2cmocuB630
CmoCh02G013510Melon (DHL92) v3.5.1cmomeB574
CmoCh02G013510Watermelon (Charleston Gray)cmowcgB510
CmoCh02G013510Watermelon (Charleston Gray)cmowcgB556
CmoCh02G013510Watermelon (97103) v1cmowmB544
CmoCh02G013510Watermelon (97103) v1cmowmB576
CmoCh02G013510Cucurbita pepo (Zucchini)cmocpeB576
CmoCh02G013510Cucurbita pepo (Zucchini)cmocpeB585