Carg02650 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02650
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ccr4-associated factor, putative
Location	Cucurbita_argyrosperma_scaffold_009 : 1087344 .. 1088309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACATTGAATTGAACACTTCCACTGAAACTTCCACCTCTTTCCCACTACACCGTCTTTTTCTTCGCCATAACCCCTCACCTCACCTCACCTCACCTCAATCCCTCCTTTATAACCCACTTTCGGTTCCCCGATCTTCCAAGCCCAAAATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

mRNA sequence

ATGAAGAACATTGAATTGAACACTTCCACTGAAACTTCCACCTCTTTCCCACTACACCGTCTTTTTCTTCGCCATAACCCCTCACCTCACCTCACCTCACCTCAATCCCTCCTTTATAACCCACTTTCGGTTCCCCGATCTTCCAAGCCCAAAATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Coding sequence (CDS)

ATGAAGAACATTGAATTGAACACTTCCACTGAAACTTCCACCTCTTTCCCACTACACCGTCTTTTTCTTCGCCATAACCCCTCACCTCACCTCACCTCACCTCAATCCCTCCTTTATAACCCACTTTCGGTTCCCCGATCTTCCAAGCCCAAAATGTTAATCCAGCATCTCTCTTCCCCCATCCATGTCCGCGAGGTCTGGGACTTCAATCTCCACCACGAATTCCGTCTCATCAACCGCCTTGTTGATCGCTACCCTTTCATTTCCATGGACACTGAGTTTCCCGGCGTCGTCGTCCGCCCTGCCTTCCACCCATCTCGCCCCTCCGATCATTACCTTCTCCTCAAGTCCAACGTCGACGCTCTCAACCTAATCCAAGTCGGTCTCACCCTCTCCGACGCCGACGGCAACCTTCCTACTCTCGGTACCGACAAGAGATTCATTTGGGAGTTCAATTTCAGGGATTTTGACGTTACCCGTGACCTCCACGCGCCTGATTCCATCGACCTCTTGAAACGCCAGGGCATCGACTTCGAACGCAACAGAGCTCACGGGGTTGACTCGGCACGATTCTCCGAGTTGCTCATGTCATCCGGTCTGCTCTGTAATCCCTCTGTCAGTTGGGTCACCTTCCATAGTGCCTATGACTTCGGCTACTTGGTCAAGATCCTCACTCGCCGGAAGCTTCCTAGCCGCCTCGACGAGTTCTTGAAGATTCTCAAGGCTTTCTTTGGGAACAAGGTTTATGATGTCAAGCACATGATGCGGTTCTGTGATAGCCTCTACGGCGGGTTGGAGCGTGTGGCTAAGACTCTAGCGGTGGACAGGGCGGTGGGAAAGTGCCACCAGGCTGGTTCTGATAGCCTGCTAACATGGCATGCCTTTCAGAAAATGAGGGATGTGTACTTTGGAAAGGATGGGCCGGAGAAGCACGCCGGCGTTTTGTACGGATTAGAAGTATATTGA

Protein sequence

MKNIELNTSTETSTSFPLHRLFLRHNPSPHLTSPQSLLYNPLSVPRSSKPKMLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY

Homology

[Close]

BLAST of Carg02650 vs. NCBI nr
Match: XP_023534188.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_023534282.1 probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 652.1 bits (1681), Expect = 9.6e-184
Identity = 318/321 (99.07%), Postives = 318/321 (99.07%), Query Frame = 0


Query: 1   MKNIELNTSTETSTSFPLHRLFLRHNPSPHLTSPQSLLYNPLSVPRSSKPKMLIQHLSSP 60
           MKNIELNTSTETSTSFPLHRLFLRHNP   LTSPQSLLYNPLSVPRSSKPKMLIQHLSSP
Sbjct: 1   MKNIELNTSTETSTSFPLHRLFLRHNP---LTSPQSLLYNPLSVPRSSKPKMLIQHLSSP 60

Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVD 120
           IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVD
Sbjct: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSNVD 120

Query: 121 ALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFER 180
           ALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFER
Sbjct: 121 ALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFER 180

Query: 181 NRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKIL 240
           NRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKIL
Sbjct: 181 NRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKIL 240

Query: 241 KAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 300
           KAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD
Sbjct: 241 KAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMRD 300

Query: 301 VYFGKDGPEKHAGVLYGLEVY 322
           VYFGKDGPEKHAGVLYGLEVY
Sbjct: 301 VYFGKDGPEKHAGVLYGLEVY 318

[Close]

BLAST of Carg02650 vs. NCBI nr
Match: XP_022995114.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima])

HSP 1 Score: 625.5 bits (1612), Expect = 9.6e-176
Identity = 308/323 (95.36%), Postives = 308/323 (95.36%), Query Frame = 0


Query: 1   MKNIELNTSTETSTSFPLHRLFLRHNP--SPHLTSPQSLLYNPLSVPRSSKPKMLIQHLS 60
           MKNIELNTS ET TSFPLHRLFLRHNP  SPHL         PLSVPRSS PKMLIQHLS
Sbjct: 1   MKNIELNTSPETYTSFPLHRLFLRHNPLTSPHLNPS---FITPLSVPRSSIPKMLIQHLS 60

Query: 61  SPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSN 120
           SPIHVREVWDFNLHHEFRLIN LVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSN
Sbjct: 61  SPIHVREVWDFNLHHEFRLINHLVDRYPFISMDTEFPGVVVRPAFHPSRPSDHYLLLKSN 120

Query: 121 VDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 180
           VDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF
Sbjct: 121 VDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 180

Query: 181 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 240
           ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK
Sbjct: 181 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 240

Query: 241 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 300
           ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM
Sbjct: 241 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 300

Query: 301 RDVYFGKDGPEKHAGVLYGLEVY 322
           RDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 301 RDVYFGKDGPEKHAGVLYGLEVY 320

[Close]

BLAST of Carg02650 vs. NCBI nr
Match: XP_022957732.1 (probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata])

HSP 1 Score: 564.7 bits (1454), Expect = 2.0e-157
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0


Query: 52  MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 111
           MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH
Sbjct: 1   MLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSDH 60

Query: 112 YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 171
           YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL
Sbjct: 61  YLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLL 120

Query: 172 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 231
           KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS
Sbjct: 121 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 180

Query: 232 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 291
           RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT
Sbjct: 181 RLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLT 240

Query: 292 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY
Sbjct: 241 WHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 270

[Close]

BLAST of Carg02650 vs. NCBI nr
Match: XP_023914621.1 (probable CCR4-associated factor 1 homolog 11 [Quercus suber] >POF07901.1 putative ccr4-associated factor 1 like 11 [Quercus suber])

HSP 1 Score: 447.2 bits (1149), Expect = 4.7e-122
Identity = 214/277 (77.26%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 53  LIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR----- 112
           +I     PI +REVW  NL  EF LI  ++DRYP+ISMDTEFPG+V RP+  PS+     
Sbjct: 1   MISEKQKPITIREVWAGNLESEFELIRDVIDRYPYISMDTEFPGLVFRPSVDPSKPYYYR 60

Query: 113 ---PSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHA 172
              PSDHY +LKSNVD LNLIQVGLTLSDA GNLP LG+  RFIWEFNF+DFDV RD HA
Sbjct: 61  PLQPSDHYRVLKSNVDVLNLIQVGLTLSDAAGNLPDLGSGNRFIWEFNFKDFDVARDPHA 120

Query: 173 PDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKIL 232
           PDSI LL RQGIDFERNR  GVDS+RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKIL
Sbjct: 121 PDSIALLMRQGIDFERNREEGVDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKIL 180

Query: 233 TRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQA 292
           TRR LPS LDEFLKIL+ FFGN+VYDVKHMMRFCDSLYGGL+RVA+TL VDRAVGKCHQA
Sbjct: 181 TRRSLPSELDEFLKILRVFFGNRVYDVKHMMRFCDSLYGGLDRVARTLEVDRAVGKCHQA 240

Query: 293 GSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           GSDSLLTWHAFQKMRDVYF  DGPEKHAGVL+GLEVY
Sbjct: 241 GSDSLLTWHAFQKMRDVYFVNDGPEKHAGVLFGLEVY 277

[Close]

BLAST of Carg02650 vs. NCBI nr
Match: EOY33343.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma cacao])

HSP 1 Score: 446.8 bits (1148), Expect = 6.1e-122
Identity = 209/271 (77.12%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 58  SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR-------PSD 117
           S P+ +REVW  NL  EF LI++++D YPFISMDTEFPG+V++P   PSR       PSD
Sbjct: 10  SKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRPYHSQLQPSD 69

Query: 118 HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 177
           HY  LKSNVDALNLIQVGLTLSD+ GNLP LGTD +FIWEFNF DFDV RD HAPDSI+L
Sbjct: 70  HYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTDTQFIWEFNFSDFDVERDAHAPDSIEL 129

Query: 178 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 237
           L+RQGIDFE+NR  G+DS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP
Sbjct: 130 LRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELP 189

Query: 238 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 297
             LDEFL+IL+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 298 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           TWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 250 TWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]

BLAST of Carg02650 vs. TAIR10
Match: AT3G44260.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 395.2 bits (1014), Expect = 3.8e-110
Identity = 188/276 (68.12%), Postives = 224/276 (81.16%), Query Frame = 0


Query: 49  KPKMLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP 108
           KP   ++     +  REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P
Sbjct: 5   KPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP 64

Query: 109 SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPD 168
            D Y LLK+NVDAL+LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPD
Sbjct: 65  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 124

Query: 169 SIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTR 228
           SI+LL+RQGIDFERN   GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTR
Sbjct: 125 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 184

Query: 229 RKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAG 288
           R+LP  L EF ++++  FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAG
Sbjct: 185 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 244

Query: 289 SDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           SDSLLTWHAFQ+MRD+YF +DGPEKHAGVLYGLEV+
Sbjct: 245 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg02650 vs. TAIR10
Match: AT5G22250.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 395.2 bits (1014), Expect = 3.8e-110
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 57  LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 116
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 117 LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 176
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 177 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 236
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 237 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 296
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 297 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Carg02650 vs. TAIR10
Match: AT5G10960.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 299.7 bits (766), Expect = 2.2e-81
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 120
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 180
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 181 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 240
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 241 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 300
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 301 DVYFGKDGPEKHAGVLYGLEV 321
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Carg02650 vs. TAIR10
Match: AT1G80780.3 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 292.7 bits (748), Expect = 2.7e-79
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 120
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 180
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 181 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 240
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 241 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 300
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 301 DVYFGKDGP-EKHAGVLYGLEV 321
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of Carg02650 vs. TAIR10
Match: AT2G32070.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein)

HSP 1 Score: 290.4 bits (742), Expect = 1.3e-78
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 120
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 180
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 181 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 240
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 241 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 300
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 301 RDVYFGKDGPEKHAGVLYGLEV 321
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]

BLAST of Carg02650 vs. Swiss-Prot
Match: sp|Q9LXM2|CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=CAF1-9 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 6.9e-109
Identity = 188/276 (68.12%), Postives = 224/276 (81.16%), Query Frame = 0


Query: 49  KPKMLIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP 108
           KP   ++     +  REVW  NL  EF LI+ ++D YPFISMDTEFPGV+ +     + P
Sbjct: 5   KPNRDLKPDGVTVVTREVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDLRFTNP 64

Query: 109 SDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTD--KRFIWEFNFRDFDVTRDLHAPD 168
            D Y LLK+NVDAL+LIQVGLTLSD +GNLP LG D  + FIWEFNFRDFDV RD HAPD
Sbjct: 65  DDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPD 124

Query: 169 SIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTR 228
           SI+LL+RQGIDFERN   GV+S RF+EL+MSSGL+CN  VSWVTFHSAYDFGYL+KILTR
Sbjct: 125 SIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGYLMKILTR 184

Query: 229 RKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCD-SLYGGLERVAKTLAVDRAVGKCHQAG 288
           R+LP  L EF ++++  FG +VYDVKHMM+FC+  L+GGL+RVA+TL V+RAVGKCHQAG
Sbjct: 185 RELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRAVGKCHQAG 244

Query: 289 SDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           SDSLLTWHAFQ+MRD+YF +DGPEKHAGVLYGLEV+
Sbjct: 245 SDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg02650 vs. Swiss-Prot
Match: sp|Q9FMS6|CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=CAF1-11 PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 6.9e-109
Identity = 194/271 (71.59%), Postives = 225/271 (83.03%), Query Frame = 0


Query: 57  LSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVR---PAFHPSRPSDHYL 116
           LS  I +R+VW +NL  EF LI  +V+ YPFISMDTEFPGV+ +          P+  Y 
Sbjct: 8   LSDVIVIRDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLDVLRRGNPNYLYN 67

Query: 117 LLKSNVDALNLIQVGLTLSDADGNLPTLGTDK--RFIWEFNFRDFDVTRDLHAPDSIDLL 176
           LLKSNVDAL+LIQVGLTLSDADGNLP LG  K  R+IWEFNFRDFDV RD HAPDSI+LL
Sbjct: 68  LLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELL 127

Query: 177 KRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPS 236
           +R GIDFERNR  GV+S RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP 
Sbjct: 128 RRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGYLVKILTRRQLPV 187

Query: 237 RLDEFLKILKAFFGNKVYDVKHMMRFCDS-LYGGLERVAKTLAVDRAVGKCHQAGSDSLL 296
            L EFL +L+AFFG++VYDVKH+MRFC+  LYGGL+RVA++L V+RAVGKCHQAGSDSLL
Sbjct: 188 ALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAVGKCHQAGSDSLL 247

Query: 297 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           TW AFQ+MRD+YF +DG EKHAGVLYGLEV+
Sbjct: 248 TWQAFQRMRDLYFVEDGAEKHAGVLYGLEVF 278

[Close]

BLAST of Carg02650 vs. Swiss-Prot
Match: sp|Q9LEU4|CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 4.0e-80
Identity = 144/261 (55.17%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRPSD-HYLLLKSNV 120
           I +REVWD+NL  EF LI  +VD++ +I+MDTEFPGVV++P       +D +Y  LK NV
Sbjct: 10  IMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 180
           D L LIQVGLT SD +GNLPT GTDK  IW+FNFR+F++  D++A +SI+LL++ GIDF+
Sbjct: 70  DLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFK 129

Query: 181 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 240
           +N   G+D  RF EL+MSSG++ N ++SWVTFH  YDFGYLVK+LT ++LP +  +F K+
Sbjct: 130 KNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCKELPLKQADFFKL 189

Query: 241 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 300
           L  +F   VYD+KH+M FC+ L+GGL R+A+ + V+R VG CHQAGSDSLLT  +F+K++
Sbjct: 190 LYVYFPT-VYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICHQAGSDSLLTLGSFRKLK 249

Query: 301 DVYFGKDGPEKHAGVLYGLEV 321
           + YF     EK+ GVLYGL V
Sbjct: 250 ERYF-PGSTEKYTGVLYGLGV 267

[Close]

BLAST of Carg02650 vs. Swiss-Prot
Match: sp|Q9SAI2|CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 4.8e-78
Identity = 144/262 (54.96%), Postives = 192/262 (73.28%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 120
           I +REVW+ NL  E  LI  +VD +P+++MDTEFPG+VVRP     S    HY  LK+NV
Sbjct: 10  IQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLKRQGIDFE 180
           + L +IQ+GLT S+  GNLPT GTDK  IW+FNFR+FD+  D+ A DSI+LLK+ GID  
Sbjct: 70  NILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLA 129

Query: 181 RNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLKI 240
           +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP    +F K+
Sbjct: 130 KNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQTDFFKL 189

Query: 241 LKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKMR 300
           +  +F   VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K++
Sbjct: 190 INVYFPT-VYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICHQAGSDSLLTSCTFRKLK 249

Query: 301 DVYFGKDGP-EKHAGVLYGLEV 321
           + +F   GP  K++GVLYGL V
Sbjct: 250 ENFF--VGPLHKYSGVLYGLGV 267

[Close]

BLAST of Carg02650 vs. Swiss-Prot
Match: sp|Q9SKZ2|CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 290.4 bits (742), Expect = 2.4e-77
Identity = 141/262 (53.82%), Postives = 193/262 (73.66%), Query Frame = 0


Query: 61  IHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRP-AFHPSRPSDHYLLLKSNV 120
           I +REVW+ NL  E  LI  +VD +PF++MDTEFPG+V RP     +    HY  LK+NV
Sbjct: 10  IQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNV 69

Query: 121 DALNLIQVGLTLSDADGNLPTLGTDKRF-IWEFNFRDFDVTRDLHAPDSIDLLKRQGIDF 180
           + L +IQ+GLT SD  GNLPT GTD ++ IW+FNFR+FD+  D++A DSI+LL++ GIDF
Sbjct: 70  NILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDF 129

Query: 181 ERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSRLDEFLK 240
            +N   G+DS RF+ELLMSSG++ N +V WVTFHS YDFGYL+K+LT + LP     F +
Sbjct: 130 VKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTGFFE 189

Query: 241 ILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTWHAFQKM 300
           ++  +F  +VYD+KH+M+FC+SL+GGL ++A+ L V+R VG CHQAGSDSLLT   F+K+
Sbjct: 190 MISVYF-PRVYDIKHLMKFCNSLHGGLNKLAELLDVER-VGICHQAGSDSLLTSCTFRKL 249

Query: 301 RDVYFGKDGPEKHAGVLYGLEV 321
           ++ +F     EK++GVLYGL V
Sbjct: 250 QENFF-IGSMEKYSGVLYGLGV 268

[Close]

BLAST of Carg02650 vs. TrEMBL
Match: tr|A0A2P4LRN0|A0A2P4LRN0_QUESU (Putative ccr4-associated factor 1 like 11 OS=Quercus suber OX=58331 GN=CFP56_27481 PE=4 SV=1)

HSP 1 Score: 447.2 bits (1149), Expect = 3.1e-122
Identity = 214/277 (77.26%), Postives = 234/277 (84.48%), Query Frame = 0


Query: 53  LIQHLSSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR----- 112
           +I     PI +REVW  NL  EF LI  ++DRYP+ISMDTEFPG+V RP+  PS+     
Sbjct: 1   MISEKQKPITIREVWAGNLESEFELIRDVIDRYPYISMDTEFPGLVFRPSVDPSKPYYYR 60

Query: 113 ---PSDHYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHA 172
              PSDHY +LKSNVD LNLIQVGLTLSDA GNLP LG+  RFIWEFNF+DFDV RD HA
Sbjct: 61  PLQPSDHYRVLKSNVDVLNLIQVGLTLSDAAGNLPDLGSGNRFIWEFNFKDFDVARDPHA 120

Query: 173 PDSIDLLKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKIL 232
           PDSI LL RQGIDFERNR  GVDS+RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKIL
Sbjct: 121 PDSIALLMRQGIDFERNREEGVDSSRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKIL 180

Query: 233 TRRKLPSRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQA 292
           TRR LPS LDEFLKIL+ FFGN+VYDVKHMMRFCDSLYGGL+RVA+TL VDRAVGKCHQA
Sbjct: 181 TRRSLPSELDEFLKILRVFFGNRVYDVKHMMRFCDSLYGGLDRVARTLEVDRAVGKCHQA 240

Query: 293 GSDSLLTWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           GSDSLLTWHAFQKMRDVYF  DGPEKHAGVL+GLEVY
Sbjct: 241 GSDSLLTWHAFQKMRDVYFVNDGPEKHAGVLFGLEVY 277

[Close]

BLAST of Carg02650 vs. TrEMBL
Match: tr|A0A061GVA7|A0A061GVA7_THECC (Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobroma cacao OX=3641 GN=TCM_041300 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 4.1e-122
Identity = 209/271 (77.12%), Postives = 235/271 (86.72%), Query Frame = 0


Query: 58  SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSR-------PSD 117
           S P+ +REVW  NL  EF LI++++D YPFISMDTEFPG+V++P   PSR       PSD
Sbjct: 10  SKPVMIREVWSDNLESEFELISQVIDEYPFISMDTEFPGLVIKPKVDPSRPYHSQLQPSD 69

Query: 118 HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 177
           HY  LKSNVDALNLIQVGLTLSD+ GNLP LGTD +FIWEFNF DFDV RD HAPDSI+L
Sbjct: 70  HYKFLKSNVDALNLIQVGLTLSDSSGNLPNLGTDTQFIWEFNFSDFDVERDAHAPDSIEL 129

Query: 178 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 237
           L+RQGIDFE+NR  G+DS RF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR+LP
Sbjct: 130 LRRQGIDFEKNREKGIDSVRFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRELP 189

Query: 238 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 297
             LDEFL+IL+ FFGN+VYD+KHMMRFC SLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GDLDEFLRILRVFFGNRVYDLKHMMRFCKSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 298 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           TWHAFQKMRDVYF KDGPEKHAGVLYGLEVY
Sbjct: 250 TWHAFQKMRDVYFVKDGPEKHAGVLYGLEVY 280

[Close]

BLAST of Carg02650 vs. TrEMBL
Match: tr|A0A2I4FDN0|A0A2I4FDN0_9ROSI (probable CCR4-associated factor 1 homolog 11 OS=Juglans regia OX=51240 GN=LOC108997829 PE=4 SV=1)

HSP 1 Score: 443.0 bits (1138), Expect = 5.9e-121
Identity = 210/269 (78.07%), Postives = 234/269 (86.99%), Query Frame = 0


Query: 60  PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPSRP-------SDHY 119
           PI +REVW  NL  EF LI  ++D YP+ISMDTEFPG+V RPA  P++P       SDHY
Sbjct: 12  PIVIREVWAANLDSEFELIRDVIDSYPYISMDTEFPGLVFRPALDPAKPYSGQLRSSDHY 71

Query: 120 LLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLK 179
            +LKSNVD LNLIQVGLTLSDADGNLP LG++ RFIWEFNF DFDV RD+HAPDSI+LL+
Sbjct: 72  RVLKSNVDVLNLIQVGLTLSDADGNLPHLGSENRFIWEFNFSDFDVARDVHAPDSIELLR 131

Query: 180 RQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSR 239
           RQGIDF+RNR  GVDSARF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR LPS 
Sbjct: 132 RQGIDFDRNREEGVDSARFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRMLPSG 191

Query: 240 LDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTW 299
           L+EFLKI++ FFGNKVYDVK+MMRFC SLYGGL+RVA+TL VDRAVGKCHQAGSDSLLTW
Sbjct: 192 LEEFLKIMRVFFGNKVYDVKYMMRFCSSLYGGLDRVARTLDVDRAVGKCHQAGSDSLLTW 251

Query: 300 HAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           HAFQKMRDVYF  DGPEKHAGVLYGLEV+
Sbjct: 252 HAFQKMRDVYFVTDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg02650 vs. TrEMBL
Match: tr|A0A2I4FDH9|A0A2I4FDH9_9ROSI (probable CCR4-associated factor 1 homolog 11 OS=Juglans regia OX=51240 GN=LOC108997778 PE=4 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 1.3e-120
Identity = 209/269 (77.70%), Postives = 232/269 (86.25%), Query Frame = 0


Query: 60  PIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS-------RPSDHY 119
           PI +REVW  NL  EF LI  ++D YP+ISMDTEFPG+V RPA  P+       RPSDHY
Sbjct: 12  PIMIREVWSANLDSEFELIRGVIDSYPYISMDTEFPGLVFRPAVDPAKPYFGQLRPSDHY 71

Query: 120 LLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDLLK 179
            ++KSNVD LNLIQVGLTLSDADGNLP LGT  RFIWEFNF DFD  RD HAPDSI+LLK
Sbjct: 72  RVMKSNVDVLNLIQVGLTLSDADGNLPDLGTGNRFIWEFNFNDFDEARDAHAPDSIELLK 131

Query: 180 RQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLPSR 239
           RQGIDF+RNR  GVDSARF+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRRKLPS 
Sbjct: 132 RQGIDFDRNREEGVDSARFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRKLPSG 191

Query: 240 LDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLLTW 299
           ++EFLKI++ FFGNKVYDVK+MMRFC+SLYGGL+RVA+TL V+R VGKCHQAGSDSLLTW
Sbjct: 192 MEEFLKIMRIFFGNKVYDVKYMMRFCNSLYGGLDRVARTLDVNRVVGKCHQAGSDSLLTW 251

Query: 300 HAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           HAFQKMRDVYF  DGPEKHAGVLYGLEV+
Sbjct: 252 HAFQKMRDVYFVSDGPEKHAGVLYGLEVF 280

[Close]

BLAST of Carg02650 vs. TrEMBL
Match: tr|A0A2C9V215|A0A2C9V215_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G165000 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 1.7e-120
Identity = 209/271 (77.12%), Postives = 234/271 (86.35%), Query Frame = 0


Query: 58  SSPIHVREVWDFNLHHEFRLINRLVDRYPFISMDTEFPGVVVRPAFHPS-------RPSD 117
           S PI +REVW  NL  EF+LI  L+D +PFISMDTEFPG+V RP+  P+       RPSD
Sbjct: 10  SKPIVIREVWSSNLESEFQLIRDLIDGFPFISMDTEFPGLVFRPSLDPTKSYSRQRRPSD 69

Query: 118 HYLLLKSNVDALNLIQVGLTLSDADGNLPTLGTDKRFIWEFNFRDFDVTRDLHAPDSIDL 177
           HY +LKSNVDALNLIQVGLTLSD++GNLP LGT  RFIWEFNFRDFDV+RD HAPDSIDL
Sbjct: 70  HYKILKSNVDALNLIQVGLTLSDSNGNLPDLGTANRFIWEFNFRDFDVSRDAHAPDSIDL 129

Query: 178 LKRQGIDFERNRAHGVDSARFSELLMSSGLLCNPSVSWVTFHSAYDFGYLVKILTRRKLP 237
           L+RQGIDFERNR  GVDS  F+EL+MSSGL+CN SVSWVTFHSAYDFGYLVKILTRR LP
Sbjct: 130 LRRQGIDFERNRDEGVDSGHFAELMMSSGLVCNDSVSWVTFHSAYDFGYLVKILTRRCLP 189

Query: 238 SRLDEFLKILKAFFGNKVYDVKHMMRFCDSLYGGLERVAKTLAVDRAVGKCHQAGSDSLL 297
             L+EFL +L+ FFG +VYD+KHMMRFCDSLYGGL+RVA+TL V+RAVGKCHQAGSDSLL
Sbjct: 190 GGLEEFLSLLRVFFGGRVYDLKHMMRFCDSLYGGLDRVARTLDVNRAVGKCHQAGSDSLL 249

Query: 298 TWHAFQKMRDVYFGKDGPEKHAGVLYGLEVY 322
           TWHAFQ+MRDVYF KDGPEKHAGVLYGLEV+
Sbjct: 250 TWHAFQRMRDVYFVKDGPEKHAGVLYGLEVF 280

The following BLAST results are available for this feature:

BLAST of Carg02650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023534188.1	9.6e-184	99.07	probable CCR4-associated factor 1 homolog 11 [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022995114.1	9.6e-176	95.36	probable CCR4-associated factor 1 homolog 11 [Cucurbita maxima]	[more]
XP_022957732.1	2.0e-157	100.00	probable CCR4-associated factor 1 homolog 11 [Cucurbita moschata]	[more]
XP_023914621.1	4.7e-122	77.26	probable CCR4-associated factor 1 homolog 11 [Quercus suber] >POF07901.1 putativ...	[more]
EOY33343.1	6.1e-122	77.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Theobroma ...	[more]

BLAST of Carg02650 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44260.1	3.8e-110	68.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G22250.1	3.8e-110	71.59	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G10960.1	2.2e-81	55.17	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.3	2.7e-79	54.96	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT2G32070.1	1.3e-78	53.82	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

BLAST of Carg02650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LXM2\|CAF1I_ARATH	6.9e-109	68.12	Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9FMS6\|CAF1K_ARATH	6.9e-109	71.59	Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9LEU4\|CAF1J_ARATH	4.0e-80	55.17	Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
sp\|Q9SAI2\|CAF1F_ARATH	4.8e-78	54.96	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
sp\|Q9SKZ2\|CAF1G_ARATH	2.4e-77	53.82	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of Carg02650 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2P4LRN0\|A0A2P4LRN0_QUESU	3.1e-122	77.26	Putative ccr4-associated factor 1 like 11 OS=Quercus suber OX=58331 GN=CFP56_274...	[more]
tr\|A0A061GVA7\|A0A061GVA7_THECC	4.1e-122	77.12	Polynucleotidyl transferase, ribonuclease H-like superfamily protein OS=Theobrom...	[more]
tr\|A0A2I4FDN0\|A0A2I4FDN0_9ROSI	5.9e-121	78.07	probable CCR4-associated factor 1 homolog 11 OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2I4FDH9\|A0A2I4FDH9_9ROSI	1.3e-120	77.70	probable CCR4-associated factor 1 homolog 11 OS=Juglans regia OX=51240 GN=LOC108...	[more]
tr\|A0A2C9V215\|A0A2C9V215_MANES	1.7e-120	77.12	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G165000 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012337	RNaseH-like_sf
IPR006941	RNase_CAF1
IPR036397	RNaseH_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02650-RA	Carg02650-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	G3DSA:3.30.420.10		coord: 59..318 e-value: 3.8E-108 score: 362.5
IPR006941	Ribonuclease CAF1	PFAM	PF04857	CAF1	coord: 69..186 e-value: 4.0E-7 score: 29.4 coord: 209..291 e-value: 7.4E-6 score: 25.3
None	No IPR available	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 57..319
None	No IPR available	PANTHER	PTHR10797:SF3	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED	coord: 57..319
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	SSF53098	Ribonuclease H-like	coord: 59..320

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02650	Cla008626	Watermelon (97103) v1	carwmB0928
Carg02650	Csa1G168920	Cucumber (Chinese Long) v2	carcuB0931
Carg02650	Csa6G425790	Cucumber (Chinese Long) v2	carcuB0941
Carg02650	MELO3C014512	Melon (DHL92) v3.5.1	carmeB0910
Carg02650	ClCG02G022360	Watermelon (Charleston Gray)	carwcgB0900
Carg02650	CSPI06G23350	Wild cucumber (PI 183967)	carcpiB0963
Carg02650	Cucsa.185830	Cucumber (Gy14) v1	carcgyB1041
Carg02650	CmaCh02G013110	Cucurbita maxima (Rimu)	carcmaB1268
Carg02650	CmoCh02G013510	Cucurbita moschata (Rifu)	carcmoB1237
Carg02650	Cp4.1LG05g04040	Cucurbita pepo (Zucchini)	carcpeB1284
Carg02650	Cp4.1LG05g04420	Cucurbita pepo (Zucchini)	carcpeB1283
Carg02650	CsGy1G014850	Cucumber (Gy14) v2	carcgybB0904
Carg02650	CsGy6G022590	Cucumber (Gy14) v2	carcgybB0914
Carg02650	MELO3C014512.2	Melon (DHL92) v3.6.1	carmedB0917
Carg02650	CsaV3_6G038490	Cucumber (Chinese Long) v3	carcucB0965
Carg02650	Cla97C01G011260	Watermelon (97103) v2	carwmbB0964
Carg02650	Cla97C02G048450	Watermelon (97103) v2	carwmbB0966
Carg02650	Bhi10G000136	Wax gourd	carwgoB1067

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02650	Cucumber (Chinese Long) v3	carcucB0967
Carg02650	Bottle gourd (USVL1VR-Ls)	carlsiB838
Carg02650	Melon (DHL92) v3.5.1	carmeB0912
Carg02650	Watermelon (Charleston Gray)	carwcgB0895
Carg02650	Watermelon (Charleston Gray)	carwcgB0902
Carg02650	Watermelon (97103) v1	carwmB0918
Carg02650	Watermelon (97103) v1	carwmB0927
Carg02650	Watermelon (97103) v2	carwmbB0968
Carg02650	Silver-seed gourd	carcarB281
Carg02650	Silver-seed gourd	carcarB294
Carg02650	Silver-seed gourd	carcarB433
Carg02650	Cucumber (Gy14) v2	carcgybB0916
Carg02650	Cucumber (Gy14) v1	carcgyB1035
Carg02650	Cucurbita maxima (Rimu)	carcmaB1267
Carg02650	Cucurbita maxima (Rimu)	carcmaB1269
Carg02650	Cucurbita maxima (Rimu)	carcmaB1270
Carg02650	Cucurbita maxima (Rimu)	carcmaB1272
Carg02650	Cucurbita moschata (Rifu)	carcmoB1229
Carg02650	Cucurbita moschata (Rifu)	carcmoB1236
Carg02650	Cucurbita moschata (Rifu)	carcmoB1238
Carg02650	Cucurbita moschata (Rifu)	carcmoB1239
Carg02650	Cucurbita moschata (Rifu)	carcmoB1242
Carg02650	Cucurbita pepo (Zucchini)	carcpeB1273
Carg02650	Cucurbita pepo (Zucchini)	carcpeB1277
Carg02650	Cucurbita pepo (Zucchini)	carcpeB1280
Carg02650	Cucurbita pepo (Zucchini)	carcpeB1286
Carg02650	Wild cucumber (PI 183967)	carcpiB0965
Carg02650	Cucumber (Chinese Long) v2	carcuB0943