CmoCh02G011790 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G011790
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr02 : 7077003 .. 7079358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTCTATGTTGCGAGTTTCGTGAATTACTTTTCTTGCATTCGATTTGGGAGCTTCATTTGTAGTTCTTTTTTTTTCCTGATTGAATTTATTTGAGATTTAGTTTTCGTTTTGGATAATCGAGCTAGCTTTGAAATAGCAGAGGCGGAAATACAGATTTGTATTCGATGCTTGTTTAATGGCTCGTCTCTGTGCGATAGATTAATGGAGAAAAAGGAAAATTAGGGGTTTCGTTGTCGGTGGATAAAATTAATTTGATGTGAACTGATCGCTACAGCGGTATTCGTCGATTTTGGGCGACTTTTTGCTAGATTGTTGCTGAAATTTCCTTTCCTGGCTCAATAAGAAAAAAAAAAAAAAAATTACAGAAGAGGAAGATGAAGAAGAGCTTGCCGTAATGGAAACTATGCATTTCAACAAAATTAATTTACTTGATTGGCTGTGTAGACTTGATGATCGTATTGACATGTGTGTGAAACAGAACCACCATTGTGTTGCTTATGGGAGTTTGTGCAATTTTGTAGAGTATTTAGACAGATGAACATAGTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCTCTTTGAGCATAAGCTCTCATGGCTTTGTTTTGGGCTTCCCCAAAAGGCCTCGTACCAATGAAGATAGTATTTCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGAGACTCACTCCCAATAATCCTCAACACATAGAGCTTTAATGTTGTTTGAGGTCTAAGGAAGACGTGTGCAGCCTTGGTTGATTCCATGTCTCTCTTATGGCTTCGGTCATTAAAACTTATTGTAATTATCCTTTAGGTCTCATTTTGCTTGATTGATGCCCACATTTATTACACACTTTAAATTTCAAAAACCTATTAGACATGAAATTGAAAGTTTATAGACCTACTCGATACGATATAACTATGAAAATTTATAGATTAAACTTGTGATTTGGCCATGATTTTTTCTCTTTTGAATAGATAAGGCACATTGATTTAGCGGTGTGTTCATGGACTCGAGACCTCTTTAAGGCCTCCTATTTGAGAAACTAAATATCTCATGAATTTCTTGATTGTCAAGTTTATAGATTAAACTTGTGCATTTTTTAAAGTTTCTTTCTCTCTTGTTTGGTTGCTTTTCCTGATGTTCATACTTCCTTAAATATTGTTTGCAAAATCTTATTTGAAATTTCTTAAAGATGATCAAGGAGTGTATTCATATTTGATTCTCATCTTCAGATTAATGGAATTGCCGTTGATGTTTTGAAATGCAAGATTCAGTTAAGTTTACCAGTCAAATTTCTGCTCGATGAAGTCGAACTAACTATATGATATATAGCTGAATCAAACGATTTAGAGCATGACAGTTTCTTTTCATTGAAAATCAAGCACGCAAATGAAATTAAATCTCTGTTGAGGATTATTGGGAGTGAGTCCCACCTTCGTTAATTTAGTGTAAGATCATGAGTTTATAAGTCAGGAATACTATCTTTATTGTTTGAGGCCTTTTGGGGAACCCCAAAGCAAAGCCATGAGAGCTTATGCTCGAAGTGGACAATATCATACCATTGTGGAGATTCGTGATTCCTAACAAAATTCATGTCTACTCTCTATAGTGATGAACCCTTGGAGTCTGAAGGAAGTTGATACGTTTTTGAAACATGCGTTCATAAGTCAGCTCACCTGCTCGTTTATAACGATGCATCATTGCCATTTTTCTGTCCATAGTTTCTTCCGTGTCGAAATCCCAAACTAGTTAAGATCTTTGTTCCATGTTTCTATCGCCTATCGGATTATCTGTTGAGAGGGAGGGACGAAAGCGGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGCTAGGTCGTGATTCATGATAACTTATTGTGTTTCCTAATGGTTATTCAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAG

mRNA sequence

ATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAG

Coding sequence (CDS)

ATGGGTTACATCCTGCGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACGTTCTTCAAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAG

Homology

[Close]

BLAST of CmoCh02G011790 vs. TrEMBL
Match: A0A0A0KJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-25
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY+LRVR+ASFFAGAAVASSLG Y+LQRDYKIAYDSIS KMGGLHDSL SRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 QNDGSQHVQRAE 73
          +ND SQHVQ AE
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of CmoCh02G011790 vs. TrEMBL
Match: A0A0L9UDM5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g085000 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-18
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY++RVRLASFFAGAA AS  G Y+L RDYK+AY S SQ+M GLH+SLESRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 QNDGSQHVQRAE 73
          Q + S+ V+  E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of CmoCh02G011790 vs. TrEMBL
Match: A0A0S3REC7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G165100 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.3e-18
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY++RVRLASFFAGAA AS  G Y+L RDYK+AY S SQ+M GLH+SLESRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 QNDGSQHVQRAE 73
          Q + S+ V+  E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of CmoCh02G011790 vs. TrEMBL
Match: A0A067JU35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20933 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.1e-17
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1   MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
           MGY+ RVRLASFFAGAA AS +GFYVL +DYK+A++SISQ++ GLH+SLE+RISALE L 
Sbjct: 40  MGYVFRVRLASFFAGAATASFVGFYVLYKDYKVAHESISQQVKGLHESLETRISALETLK 99

Query: 61  QNDGSQHVQRAE 73
           Q + SQ  Q AE
Sbjct: 100 QAEDSQPAQAAE 111

[Close]

BLAST of CmoCh02G011790 vs. TrEMBL
Match: E0CVB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01100 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-16
Identity = 46/72 (63.89%), Postives = 61/72 (84.72%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MG++LRVRLASFFAGAA AS LG Y+L +DYK+A++SIS++M GL+DSL++RISALEKL 
Sbjct: 1  MGFVLRVRLASFFAGAATASFLGLYILHKDYKVAHESISRQMKGLNDSLDARISALEKLK 60

Query: 61 QNDGSQHVQRAE 73
          + + SQ V+  E
Sbjct: 61 EVEASQSVEATE 72

[Close]

BLAST of CmoCh02G011790 vs. TAIR10
Match: AT5G53650.1 (AT5G53650.1 unknown protein)

HSP 1 Score: 80.9 bits (198), Expect = 3.6e-16
Identity = 41/72 (56.94%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY+ RVRLASFFAGAA AS +G  VL +DYK+A++SISQ+    HDSL+ RIS LE L 
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 61 QNDGSQHVQRAE 73
          Q++  Q  +  E
Sbjct: 61 QSEAPQLAETTE 72

[Close]

BLAST of CmoCh02G011790 vs. NCBI nr
Match: gi|659074555|ref|XP_008437667.1| (PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-26
Identity = 64/72 (88.89%), Postives = 68/72 (94.44%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY+LRVR+ASFFAGAAVASSLG Y+LQRDYKIAYDSIS KMGGLHDS+ SRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60

Query: 61 QNDGSQHVQRAE 73
          QNDGSQHVQ AE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of CmoCh02G011790 vs. NCBI nr
Match: gi|778698619|ref|XP_011654572.1| (PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-25
Identity = 63/72 (87.50%), Postives = 67/72 (93.06%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY+LRVR+ASFFAGAAVASSLG Y+LQRDYKIAYDSIS KMGGLHDSL SRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 QNDGSQHVQRAE 73
          +ND SQHVQ AE
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of CmoCh02G011790 vs. NCBI nr
Match: gi|920697427|gb|KOM40652.1| (hypothetical protein LR48_Vigan04g085000 [Vigna angularis])

HSP 1 Score: 98.2 bits (243), Expect = 6.2e-18
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY++RVRLASFFAGAA AS  G Y+L RDYK+AY S SQ+M GLH+SLESRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 QNDGSQHVQRAE 73
          Q + S+ V+  E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of CmoCh02G011790 vs. NCBI nr
Match: gi|643715223|gb|KDP27402.1| (hypothetical protein JCGZ_20933 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-17
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1   MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
           MGY+ RVRLASFFAGAA AS +GFYVL +DYK+A++SISQ++ GLH+SLE+RISALE L 
Sbjct: 40  MGYVFRVRLASFFAGAATASFVGFYVLYKDYKVAHESISQQVKGLHESLETRISALETLK 99

Query: 61  QNDGSQHVQRAE 73
           Q + SQ  Q AE
Sbjct: 100 QAEDSQPAQAAE 111

[Close]

BLAST of CmoCh02G011790 vs. NCBI nr
Match: gi|802710156|ref|XP_012084572.1| (PREDICTED: uncharacterized protein LOC105643939 [Jatropha curcas])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-17
Identity = 49/72 (68.06%), Postives = 60/72 (83.33%), Query Frame = 1


Query: 1  MGYILRVRLASFFAGAAVASSLGFYVLQRDYKIAYDSISQKMGGLHDSLESRISALEKLN 60
          MGY+ RVRLASFFAGAA AS +GFYVL +DYK+A++SISQ++ GLH+SLE+RISALE L 
Sbjct: 1  MGYVFRVRLASFFAGAATASFVGFYVLYKDYKVAHESISQQVKGLHESLETRISALETLK 60

Query: 61 QNDGSQHVQRAE 73
          Q + SQ  Q AE
Sbjct: 61 QAEDSQPAQAAE 72

The following BLAST results are available for this feature:

BLAST of CmoCh02G011790 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G011790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJB2_CUCSA	1.2e-25	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1	[more]
A0A0L9UDM5_PHAAN	4.3e-18	68.06	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g085000 PE=4 SV=1	[more]
A0A0S3REC7_PHAAN	4.3e-18	68.06	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G165100 PE=...	[more]
A0A067JU35_JATCU	2.1e-17	68.06	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20933 PE=4 SV=1	[more]
E0CVB0_VITVI	1.8e-16	63.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01100 PE=4 SV=...	[more]

BLAST of CmoCh02G011790 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53650.1	3.6e-16	56.94	unknown protein	[more]

BLAST of CmoCh02G011790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074555\|ref\|XP_008437667.1\|	2.1e-26	88.89	PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo]	[more]
gi\|778698619\|ref\|XP_011654572.1\|	1.8e-25	87.50	PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus]	[more]
gi\|920697427\|gb\|KOM40652.1\|	6.2e-18	68.06	hypothetical protein LR48_Vigan04g085000 [Vigna angularis]	[more]
gi\|643715223\|gb\|KDP27402.1\|	3.1e-17	68.06	hypothetical protein JCGZ_20933 [Jatropha curcas]	[more]
gi\|802710156\|ref\|XP_012084572.1\|	3.1e-17	68.06	PREDICTED: uncharacterized protein LOC105643939 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0008150	biological_process
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G011790.1	CmoCh02G011790.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34970	FAMILY NOT NAMED	coord: 2..72 score: 7.1
None	No IPR available	PANTHER	PTHR34970:SF2	SUBFAMILY NOT NAMED	coord: 2..72 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G011790	CmaCh15G009990	Cucurbita maxima (Rimu)	cmacmoB299
CmoCh02G011790	Csa5G138470	Cucumber (Chinese Long) v2	cmocuB602
CmoCh02G011790	ClCG01G000130	Watermelon (Charleston Gray)	cmowcgB520
CmoCh02G011790	CSPI05G02710	Wild cucumber (PI 183967)	cmocpiB609
CmoCh02G011790	LsiUNG001610	Bottle gourd (USVL1VR-Ls)	cmolsiB515
CmoCh02G011790	Cp4.1LG05g05800	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G011790	CsaV3_5G000030	Cucumber (Chinese Long) v3	cmocucB0722
CmoCh02G011790	Cla97C01G000120	Watermelon (97103) v2	cmowmbB580
CmoCh02G011790	Bhi12G000597	Wax gourd	cmowgoB0703
CmoCh02G011790	Carg13992	Silver-seed gourd	carcmoB0694
CmoCh02G011790	Carg26784	Silver-seed gourd	carcmoB0785

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G011790	CmoCh15G010630	Cucurbita moschata (Rifu)	cmocmoB251

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G011790	Wild cucumber (PI 183967)	cmocpiB611
CmoCh02G011790	Cucumber (Chinese Long) v2	cmocuB603
CmoCh02G011790	Melon (DHL92) v3.5.1	cmomeB515
CmoCh02G011790	Cucurbita pepo (Zucchini)	cmocpeB551
CmoCh02G011790	Cucurbita pepo (Zucchini)	cmocpeB589
CmoCh02G011790	Cucumber (Gy14) v2	cgybcmoB618
CmoCh02G011790	Melon (DHL92) v3.6.1	cmomedB591
CmoCh02G011790	Cucumber (Chinese Long) v3	cmocucB0723
CmoCh02G011790	Cucumber (Gy14) v1	cgycmoB0603
CmoCh02G011790	Cucurbita maxima (Rimu)	cmacmoB260
CmoCh02G011790	Cucurbita maxima (Rimu)	cmacmoB619