Cp4.1LG05g05800 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g05800
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionABC transporter A family member 1
LocationCp4.1LG05 : 3504100 .. 3508073 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATCAATGAATCAAAGTAGAAATTAGTATTTACCCTAAAATTTCTTTTACAATTTGTGTTTGCAGAGAAAAGAATACGGGAGGGAACAGAAACGAAGCAGAAGGGCGTGGTGGTAGAGATGGGTTACATCCTGAGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCCTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTTGCGAGTTTCGNCGGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTTGCGAGTTTCGTGAATTACTTTTCTTGCATTCGATTTGGGAGCTTCATTTGTAGTTTTTTTTTTTTTTTTTCTGATTGAATTTATTTGAGATTTAGTTTTCGTTTTGGATAATCGAGCTAGCTTTGAAATAGCAGAGGCGGAAATACAGATTTGTATTCGATGCTTGTTTAATGCCTCGTCTCTGTGCGATAGATTAATGGAGAAAAAGGAAAATTAGGGGTTTCGTTGTCGGTGGATAAAATTAATTTGATGTGAACTGATCGCTACAGCGGTATTCGTCGATTTTGGGCGACTTGTTGTTAGATTGTTGCTGAAATTTCCTTTCCTGGCTCAATAAGAAAAAAAAAATTACAGAAGAGGAAGATGAAGAAGAGCTTGCCGTAATGTAAACTATGCATTTCAACAAAATTAATGTACTTGATTGGCTGTGTAGACTTGATGATCGTATTGACATGTGTGTGAAACAGAACCACCATTGTGTTGCTTATGGGAGTTTGTGCAATTTTGTAGAGTATTTAGGCCTCATACCAATGGAGATAGTATTCCTCACTTATAAACCCATGATCTTCCACTAAATTAACCAACGTGGAACTCACTCCCAATAATCCTCAACACACAGAGCTTTAATGTTGTTTGAGGTCTAAGGAAGACGTGTGCAGCCTTGGTTGGTTCCATGTCTCTCTTATGGCTTCGGTCATTAAGACTTATTGTAATTATCCTTTAGGTCTCATTTTGCTTGATTGATGCCCACATTTGTTTTAGTTTAGCTACCCACTTTTGATGCCCACATTTATTACACACTTTAAGAATTCAAAAACCTATTAGACATGAAATTGAAAGTTTATAGACCTACTCGATACGATATAACTATGAAAGTTTATAGATTAAACTTGTGATTTGGCCTTGATTTTTTCTCTTTTGGATAGATAAGGCACATTGATTTAGCGATGTGTTCATGGACTTGAGACCTCTTTAAGGCCTCCTATTGAGAAACTAAATATCTCATGAATTTCTTGATTGTCAAATGTCGTTATGTTAGACAGCAGTCTCCATTTTGAAGTTGATGAATATAAGCGAGCTTAGCTGGAAGACAGGGTAGGAGTTTAAGGTTTTGGTAGTATGGGAGTTCATCGACTAAGCAGTGAGTCCATGGACTCAAAACCTCTCTAGGCTCCCTGTTTCGGTTCTTAAATATCCTAGTGTCAACTGTGGATAGCTTAGACACCAGTGTCCATTTTGAAGTTTTTGACTATTGAGAGGTTGAAGGATGTGAGAATCAAAGAGAGTAGAAGTTTCGAAGCATCGATATTTAGTATGAGCATGTGAAGACCGTAGGAGAGTTTAAGATTCTGGTTATATGAAATTTCGAGGGAGATAAAAGATTGGAGCCTGGAATGGGAGCATGAGAAAGGGTTGATCCCTTTTTCAGAGTAAGTGTTGAGCATGACATCCATGATCATGTTCTTTAGATGAAGTTTCTCAGGAAAGCTGGTGTAGCGGAAGGCTTCATTTGTATCCAGGAAGCATTTGATAGAGAATGTTAACTGGAGCCGGTAACCTGATGTCCACTTTTGGAATTAGAAAAAATGTAGCTGTCCAGTGCGGTTGGTTGGTGAATGGTGGAGCACGCTTCTGAGGATGGTGACACACTCAAACACACACAAAGAAGCAGTTTCCAATTGAATCTCCATGTCATCTAGAAACCAAAGCCTTTCCTTGTTACAAGATTGCCCATCCCAAATCCTCCACCTCTGTCACTTGAAACGACATTCTGATGCACTAATCGGCGTTCCCCCGGTAAATCTGTCCGAATCTATAAAAAAGTCTCTCATCTTTTTTCCTAACCACTCATCATTAAGAGGGATTTTAAAAAGAGATAGTATTTGAGATACAAGAGATGCCAAATTGTGGAGCAAAGTTTAGCATCCACCTTTGGAATGCAGGGGGTTTTCCTCTTCTATAGCCTTTTCTACACCTAATTGCTGGATTCGAGAAAACTTCTTAGGATATCGTCTCCGACTCTTCAAGCAGTGTACCTAAATAAAGCAGGGGCCACTCACCTTCAGAACAGCCAGTCTAACAGCAATGTCTTGCACCTCCTTGTCAACCTCAGCTTAAAGAAACCTCTATCTAAGGAGGATTAAAGAAGGCCCTCCAACTCATATGCCAATCCCTTTATCTAAGAGTCTACTGAGGAAGTTCAAATTCATTCAAATTAAATTATATATAGCAGTATGTTAATTATTAAACCTTCATATTTAGACGTATGTTTCTTAAAGAAAACTTGTGCATTTTTTAGGCTTCTTTCCCTAAATAATTTATGGTACTCTACCAGTGGCAACTAAATGGTCTTTTAAATTTTATTATCTTCCAAGTACAACTTTGTTTCCTTTCTCTCTTGTTTGGTTGCTTTTCCTGATGTTCATACTTTCTTAAATATTGTTTGCAAAATCTTATTTCAAGTTTCTTAAAGATGATAAAGGAGTGTATTCATATTTGATTCTCACCTTCAGATTAATGGAATTGCCGTTGATGTTTTGCAATGCAAGATTCAGTTAAGTTTACCAGTCAAATTTCTGCTCGTCGAACTAACTATATGATATATAGCTGAATCAAACGAATTAGAGAATGACAGTTCATTTTCATTGAGAATCAAGCACACAAATGAAATTAAATCTCCNGCAATGCAAGATTCAGTTAAGTTTACCAGTCAAATTTCTGCTCGATGAAGTCGAACTAACTATATGATATATAGCTGAATCAAACGAATTAGAGAATGACAGTTTATTTTCATTGAGAATCAAGCACACAAATGAAATTAAATCTCCATGTCTACTCTCAATAGTGATGAGCCCTTGGAGCCTGAAAGAAGTTGATACGCGTTTGAAACTTGCGTTCATAAGTCAGCTCACCTGCTCGTTTATAACGATGCATCATTGCCANGCTTTTGAAACTTGCGTTCACAAGTCAGCTCACCTGCTCGTTTATAACGATGCATCATTGCCATTTTTCTGTCCATAGTTTCTTCCATGTCGAAGTCCCAAACTAGTTAAGATCTTTCTCCATGTTTCTATCGCCTATCGGATTATCTGTTGAGAGGGAGGGACGAAAGCGAGGGGGGGGCTAGGTCGTGATTCAGGATAACTTATTGTGTTTCCTAATGGTTATTCAGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAGACACACACTGGAGGGGCCAAGCCAGGATAGTCTGAAGGAAACATAAAGAACTTATGAACAATAATAATAAACTGGTCTCTGCTTTGTCTGCTCATCAAAAAAGATGTTTAAGTTTTGCTTGCAAGATTTGTTTATTTCCTGTATGATCTTTGTTTGTTGGTATCAGATTTAGGCTTGTTCCATGCTGGTAGCTATGTTGCTGTGATGTTACCCTGCTCATGTAAGACTTGGGTATGAGTTTGATGAGAAATCATTATATGAGATTTCTGGGAAGCAGAAATTCAGTTTTCTAAATATACATATTTTTTCATTTTTGTCACCAGAGT

mRNA sequence

TGATCAATGAATCAAAGTAGAAATTAGTATTTACCCTAAAATTTCTTTTACAATTTGTGTTTGCAGAGAAAAGAATACGGGAGGGAACAGAAACGAAGCAGAAGGGCGTGGTGGTAGAGATGGGTTACATCCTGAGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCCTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTTGCGAGTTTCGNCGGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGAAACCAAAGCCTTTCCTTGTTACAAGATTGCCCATCCCAAATCCTCCACCTCTGTCACTTGAAACGACATTCTGATGCACTAATCGGCGTTCCCCCGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAGACACACACTGGAGGGGCCAAGCCAGGATAGTCTGAAGGAAACATAAAGAACTTATGAACAATAATAATAAACTGGTCTCTGCTTTGTCTGCTCATCAAAAAAGATGTTTAAGTTTTGCTTGCAAGATTTGTTTATTTCCTGTATGATCTTTGTTTGTTGGTATCAGATTTAGGCTTGTTCCATGCTGGTAGCTATGTTGCTGTGATGTTACCCTGCTCATGTAAGACTTGGGTATGAGTTTGATGAGAAATCATTATATGAGATTTCTGGGAAGCAGAAATTCAGTTTTCTAAATATACATATTTTTTCATTTTTGTCACCAGAGT

Coding sequence (CDS)

ATGGGTTACATCCTGAGAGTGAGATTGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCCTACGACTCCATTTCGCAAAAGGTATTTGGATTTTCATATTTATGTTGCGAGTTTCGNCGGCGGTTGCATCGTCTCTGGGGTTTTACATTCTTCGAAGAGATTACAAGATTGCTTACGACTCCATTTCGCAAAAGAAACCAAAGCCTTTCCTTGTTACAAGATTGCCCATCCCAAATCCTCCACCTCTGTCACTTGAAACGACATTCTGATGCACTAATCGGCGTTCCCCCGATGGGAGGGCTGCATGATTCTCTGGAGAGTAGAATTTCAGCACTGGAAAAACTGAACCAGAATGACGGTTCCCAACATGTTCAAAGAGCGGAATAG

Protein sequence

MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFGFSYLCCEFRRRLHRLWGFTFFEEITRLLTTPFRKRNQSLSLLQDCPSQILHLCHLKRHSDALIGVPPMGGLHDSLESRISALEKLNQNDGSQHVQRAE
BLAST of Cp4.1LG05g05800 vs. TrEMBL
Match: A0A0A0KJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 7.7e-11
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+LRVR+ASFFAGAAVASSLG Y+L+RDYKIAYDSIS K+ G
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGG 44

BLAST of Cp4.1LG05g05800 vs. TrEMBL
Match: B9S0S9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0950610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.4e-09
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+ RVR+ASFFAGAA AS +GFY+L +DYK+A+DSISQ+V G
Sbjct: 1  MGYVFRVRMASFFAGAATASFVGFYVLYKDYKVAHDSISQQVQG 44

BLAST of Cp4.1LG05g05800 vs. TrEMBL
Match: A0A067JU35_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20933 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+ RVRLASFFAGAA AS +GFY+L +DYK+A++SISQ+V G
Sbjct: 40 MGYVFRVRLASFFAGAATASFVGFYVLYKDYKVAHESISQQVKG 83

BLAST of Cp4.1LG05g05800 vs. TrEMBL
Match: M5X6Z6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014368mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-08
Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+LRVRLASFF GAAVAS LG YIL  DYK+A+ +ISQ+V G
Sbjct: 1  MGYVLRVRLASFFGGAAVASFLGLYILHNDYKVAHQAISQQVRG 44

BLAST of Cp4.1LG05g05800 vs. TrEMBL
Match: V4TRT8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023193mg PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-08
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKV 43
          MGY+LRVRLASFF GAA AS+LG YIL  DYK+A++SISQ+V
Sbjct: 1  MGYVLRVRLASFFTGAATASALGLYILHNDYKLAHESISQQV 42

BLAST of Cp4.1LG05g05800 vs. TAIR10
Match: AT5G53650.1 (AT5G53650.1 unknown protein)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-09
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFGF 46
          MGY+ RVRLASFFAGAA AS +G  +L +DYK+A++SISQ+   F
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSF 45

BLAST of Cp4.1LG05g05800 vs. NCBI nr
Match: gi|778698619|ref|XP_011654572.1| (PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+LRVR+ASFFAGAAVASSLG Y+L+RDYKIAYDSIS K+ G
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGG 44

BLAST of Cp4.1LG05g05800 vs. NCBI nr
Match: gi|659074555|ref|XP_008437667.1| (PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 36/44 (81.82%), Postives = 41/44 (93.18%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+LRVR+ASFFAGAAVASSLG Y+L+RDYKIAYDSIS K+ G
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGG 44

BLAST of Cp4.1LG05g05800 vs. NCBI nr
Match: gi|719964164|ref|XP_010251892.1| (PREDICTED: uncharacterized protein LOC104593632 [Nelumbo nucifera])

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-08
Identity = 32/42 (76.19%), Postives = 39/42 (92.86%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKV 43
          MGY+LRVRLASFFAGAA AS++GFYIL RDYK+A+ +ISQ+V
Sbjct: 46 MGYVLRVRLASFFAGAATASAVGFYILHRDYKVAHAAISQQV 87

BLAST of Cp4.1LG05g05800 vs. NCBI nr
Match: gi|1000965669|ref|XP_015574919.1| (PREDICTED: uncharacterized protein LOC8262229 isoform X2 [Ricinus communis])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+ RVR+ASFFAGAA AS +GFY+L +DYK+A+DSISQ+V G
Sbjct: 1  MGYVFRVRMASFFAGAATASFVGFYVLYKDYKVAHDSISQQVQG 44

BLAST of Cp4.1LG05g05800 vs. NCBI nr
Match: gi|1000965667|ref|XP_002519598.2| (PREDICTED: uncharacterized protein LOC8262229 isoform X1 [Ricinus communis])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-08
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 1

Query: 1  MGYILRVRLASFFAGAAVASSLGFYILRRDYKIAYDSISQKVFG 45
          MGY+ RVR+ASFFAGAA AS +GFY+L +DYK+A+DSISQ+V G
Sbjct: 1  MGYVFRVRMASFFAGAATASFVGFYVLYKDYKVAHDSISQQVQG 44

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KJB2_CUCSA7.7e-1181.82Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1[more]
B9S0S9_RICCO9.4e-0970.45Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0950610 PE=4 SV=1[more]
A0A067JU35_JATCU1.6e-0870.45Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20933 PE=4 SV=1[more]
M5X6Z6_PRUPE3.6e-0872.73Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014368mg PE=4 SV=1[more]
V4TRT8_9ROSI3.6e-0873.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10023193mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G53650.11.3e-0962.22 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778698619|ref|XP_011654572.1|1.1e-1081.82PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus][more]
gi|659074555|ref|XP_008437667.1|1.1e-1081.82PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo][more]
gi|719964164|ref|XP_010251892.1|1.0e-0876.19PREDICTED: uncharacterized protein LOC104593632 [Nelumbo nucifera][more]
gi|1000965669|ref|XP_015574919.1|1.4e-0870.45PREDICTED: uncharacterized protein LOC8262229 isoform X2 [Ricinus communis][more]
gi|1000965667|ref|XP_002519598.2|1.4e-0870.45PREDICTED: uncharacterized protein LOC8262229 isoform X1 [Ricinus communis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009062 fatty acid catabolic process
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g05800.1Cp4.1LG05g05800.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34970FAMILY NOT NAMEDcoord: 2..42
score: 1.9
NoneNo IPR availablePANTHERPTHR34970:SF2SUBFAMILY NOT NAMEDcoord: 2..42
score: 1.9

The following gene(s) are paralogous to this gene:

None