Csa5G138470 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa5G138470
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr5 : 3336355 .. 3339431 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATATGATTTGTGAATAGGCATTTTCCATTTGGCATTTGCGAAGCAAAACGGAAGGGCGTGGGGGTGGAAGATGGGTTACGTGCTGAGAGTGAGAATGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCTTCTCTGGGGCTTTACCTTCTTCAGAGAGATTACAAGATTGCTTACGACTCCATTTCGCACAAGGTATTCTCATTTCTTCGTTGCCCCCTCGCTTCTTCTCCATCTCAGTTTGATTCATTTTCGCCTCGATTACTATTCCAAATTGAATTAGTTTGTTTGTGAAATTCTTGAATTCTCCGGCAGACGTGGAGATTCAAATTTGTATACGACGCTGGTTTTCAAACTCATCTCTGTGCGAAAACTTGGGGGATGAGAAATAGAATTAGGGATTTCATTGTCGGTGCATAAATGCCCGGTTTTTTATGTCATGTTGTCACATGTTTCTGCTTAGTGGATAGTTACAGTCATGGTTACTAGACTTTTAGGCTGTGTTTAATGTGTCCTTGAATTTCAATTTTGTGTGTAATAGGTTTCTTGACCTAGTGAATATTTTTTACGTCCATTGGCTAGTGAAACAAAAAATTAGAAAGTCAACATCTTAATGAACTTGAAATTCAAAATTAAAAGCTCAATAGATCTGAGAGAGGGTAAAGTTTCTTAATAGGCTTTCTTTGAGCGAAGCACGGATGTGTGAGTCTCTTTGAAGGTCGAGTATGTGGATCTGATTCGGAAAGATGCAATAATGACCTGAATCTTTTAAGTCCCATTGGGGATTAACCCAAGAAATGTGAAGGATTAGCCCATTCAACTGTTTATACGACAATGTTGTGCACCACTAGCAACAAGTCCAGTGTTTGACGAATAAATCTCCAACGGAACTTGAAAGATCCAGGCTGTGTGGATTGAGGCCACCTGTTCCCAATTGCAATCATGTAGTATTTAGCTTCAATAAATTTTTACCAAGGATTACTTTCATTATGGAAACGTTAAATCCATTTGACCAATGAAGCCAAAATTTGATGTTAAAAATTTCCAATCCTAAGACCACCCATCAATTAAGGAAGCTGATTAGTCTCCCAATTCCCATTATGCATACCTCTATTCTCTCGAGAACCTTCCTATAAGAAATCACTGATAATCTTGTGACTTCCTATTATCTTTAATATATAATAAGTGGGCATGCTAATGTCTGCCACCTTTTGAAATGAAAGCATACTTCTAATTACTTTTTGAATAAGGAAACAAAACTTTTTATTATTGGAATGAAAAGAATCTAAAGCATACTTCCAATATGAAGTTTGTGTTACATCTTTCCAATAACAAGTTGCCAAAAAGAGACTGATTTAGATTACCTCCCAAGAGAAGCCCAAGATAGGTAGATGGCTCACGTCCCTTTTTGCAGCCAAAGGTATCATGTTCCATCTATTTCAGAATCATCAATGTGAATCCCTAAAAGCTCAATTTTAGTAAGTTATCTTTTAAGTTTCCTCATAAAAGGAAAAAAAGAGAGAGGTCACTCCTTAAACCAGAATTCCTCTAAAAAAATTTGACAACTTCAAAAAGGTGTTACAATGCAGTCTGATGACTGGTTGAAAGTGCCATTAACCCCTTGACCTTTAAGAGTAAACTAACGTCCTCTCTTTCCCTTGTAATTTTACCAACAATTTGGTGCTAAATTGACCCATCTTTCTGATTGAATCTCCTTGCCATTAAAATACTAAACCCGTAACTTGCAATATGATTGTGTACCCCTAATCCTCATCTGTCACTTGAAAGGATCTTCTCTTGCTAAATCTCTCCTATCTAGTTTCTCATCTTTATTCCTAACCACTTTAGCATTACTAACATGGATTTTGAAAAAAGATAGGAGGTGGATAGAAGAGAACAAATCTAGCATCTACCTTTAGAGTACAGGGTCTTTTCCACTTATATAACCTTTCCTACACCCAATTGCTGGATTCCAGACTTGTTGGGAGATCTCTCTGAGCAACATACCTAAATAAAGAAGCAGCTAACTCACCTTCAGAAAAGCCAACCTAGTAACCATAATCTTGCAGCTTCCACCTCTATGTCAACCCAGGACCCAGGTAAGGAAGATTAAAAAAGGCCCTCCATCTCTAAAAAGATCGTTTAAGCTGTAACATGGGAAGGCAAAAGAACATTTGCACCGGCATAGAGATGGTTAGAATTGATCTAGTTATTAGCAACTGCCAACTGTTACTTTGAGACCCATGTGGCCATCTCTTTATTTAAGAGTTCACTGAGGACATTCACATTCGCAAGTTCAAAAGTCCATGGCATGGAGTCTGCAAGGGAAGAAGAAAAAGAGAAAGAGTCCCTTCCATCATCAGATTGGAACTGCCGTTAATTTTTTGAAATGCAAGTTTCAGTGAAGTTTCTAAGTCAAATTTCAGCTCTATGAAGGGCAACTAACTCTATGTTATAGCTGAATCAAACTATTCACTAGAGAATGATTGCTTTTTACCATTGAGAATCGTGCATACAATGAATTCATTTTTGCATTTTACATGCTTAATGGTGATGAGCCTTAGGAGCCTTAAAACTTCGATGGTATTTATTGAGAACAAGATAAACATTGGTAAGATTTTATTATTCTGCATTGCTGAATTATTATTTATTAGTCTTGGGAAACTTAGCCTCAAGTTTGGCAGTGGAAAGGAAGTCGTTTTTTGCAATGGGCATCTGTAAGTATTAAGTACACTGGCAATTTGCAAACAATATACACAACCCAGCACACCTGCTTGAAACAAAAATACACCATTACCATCTTTTGTCTATAATTTCTTCTGATTTTCGGTCCGAAACTGATTGAGGAATGTTGTCAGTGTTTAAAATTTAAAATATATAAGATCTTTGTCCCATGTTTCTATCGCCCTTCTTGGTTGTTGGTGAAAGAGGGAATGGAGGATGGTTCATGATAACTTTTTTTTTCCTAATGGTTATCCAGATGGGAGGGCTGCATGATTCTCTGGGAAGTAGAATTTCGGCACTGGAAAAGCTGAATAAGAATGATAGTTCCCAACATGTTCAAGCAGCAGAGTAG

mRNA sequence

ATGGGTTACGTGCTGAGAGTGAGAATGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCTTCTCTGGGGCTTTACCTTCTTCAGAGAGATTACAAGATTGCTTACGACTCCATTTCGCACAAGATGGGAGGGCTGCATGATTCTCTGGGAAGTAGAATTTCGGCACTGGAAAAGCTGAATAAGAATGATAGTTCCCAACATGTTCAAGCAGCAGAGTAG

Coding sequence (CDS)

ATGGGTTACGTGCTGAGAGTGAGAATGGCTTCCTTCTTCGCCGGAGCAGCGGTTGCATCTTCTCTGGGGCTTTACCTTCTTCAGAGAGATTACAAGATTGCTTACGACTCCATTTCGCACAAGATGGGAGGGCTGCATGATTCTCTGGGAAGTAGAATTTCGGCACTGGAAAAGCTGAATAAGAATGATAGTTCCCAACATGTTCAAGCAGCAGAGTAG

Protein sequence

MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLNKNDSSQHVQAAE*

Homology

[Close]

BLAST of Csa5G138470 vs. TrEMBL
Match: A0A0A0KJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.4e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 KNDSSQHVQAAE 73
          KNDSSQHVQAAE
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of Csa5G138470 vs. TrEMBL
Match: A0A0S3REC7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G165100 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYV+RVR+ASFFAGAA AS  GLY+L RDYK+AY S S +M GLH+SL SRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++S+ V+A E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of Csa5G138470 vs. TrEMBL
Match: A0A0L9UDM5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g085000 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-18
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYV+RVR+ASFFAGAA AS  GLY+L RDYK+AY S S +M GLH+SL SRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++S+ V+A E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of Csa5G138470 vs. TrEMBL
Match: E0CVB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01100 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.7e-18
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MG+VLRVR+ASFFAGAA AS LGLY+L +DYK+A++SIS +M GL+DSL +RISALEKL 
Sbjct: 1  MGFVLRVRLASFFAGAATASFLGLYILHKDYKVAHESISRQMKGLNDSLDARISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++SQ V+A E
Sbjct: 61 EVEASQSVEATE 72

[Close]

BLAST of Csa5G138470 vs. TrEMBL
Match: A0A058ZXT6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00422 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-17
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYVLRVRMASFFAGAA AS +GLY+L  DYK+A +S+SH+M GLH SL  RIS LEKL 
Sbjct: 1  MGYVLRVRMASFFAGAATASFIGLYILHNDYKVAQESVSHQMKGLHASLDRRISDLEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + + S H +AAE
Sbjct: 61 QANVSNHAEAAE 72

[Close]

BLAST of Csa5G138470 vs. TAIR10
Match: AT5G53650.1 (AT5G53650.1 unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 6.2e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYV RVR+ASFFAGAA AS +GL +L +DYK+A++SIS +    HDSL  RIS LE L 
Sbjct: 1  MGYVFRVRLASFFAGAATASFIGLSVLYKDYKVAHESISQQAKSFHDSLDRRISTLESLR 60

Query: 61 KNDSSQHVQAAE 73
          ++++ Q  +  E
Sbjct: 61 QSEAPQLAETTE 72

[Close]

BLAST of Csa5G138470 vs. NCBI nr
Match: gi|778698619|ref|XP_011654572.1| (PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 4.9e-31
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60

Query: 61 KNDSSQHVQAAE 73
          KNDSSQHVQAAE
Sbjct: 61 KNDSSQHVQAAE 72

[Close]

BLAST of Csa5G138470 vs. NCBI nr
Match: gi|659074555|ref|XP_008437667.1| (PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo])

HSP 1 Score: 137.9 bits (346), Expect = 7.1e-30
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDS+GSRISALEKLN
Sbjct: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSMGSRISALEKLN 60

Query: 61 KNDSSQHVQAAE 73
          +ND SQHVQAAE
Sbjct: 61 QNDGSQHVQAAE 72

[Close]

BLAST of Csa5G138470 vs. NCBI nr
Match: gi|951041414|ref|XP_014517929.1| (PREDICTED: uncharacterized protein LOC106775335 [Vigna radiata var. radiata])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-18
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYV+RVR+ASFFAGAA AS  GLY+L RDYK+AY S SH+M  LH+SL SRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSHQMNDLHNSLESRISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++S+ V+A E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of Csa5G138470 vs. NCBI nr
Match: gi|920697427|gb|KOM40652.1| (hypothetical protein LR48_Vigan04g085000 [Vigna angularis])

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-18
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MGYV+RVR+ASFFAGAA AS  GLY+L RDYK+AY S S +M GLH+SL SRISALEKL 
Sbjct: 1  MGYVMRVRLASFFAGAATASFAGLYILHRDYKVAYQSFSQQMNGLHNSLESRISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++S+ V+A E
Sbjct: 61 QTETSEQVEAPE 72

[Close]

BLAST of Csa5G138470 vs. NCBI nr
Match: gi|225455246|ref|XP_002272716.1| (PREDICTED: uncharacterized protein LOC100262248 [Vitis vinifera])

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MGYVLRVRMASFFAGAAVASSLGLYLLQRDYKIAYDSISHKMGGLHDSLGSRISALEKLN 60
          MG+VLRVR+ASFFAGAA AS LGLY+L +DYK+A++SIS +M GL+DSL +RISALEKL 
Sbjct: 1  MGFVLRVRLASFFAGAATASFLGLYILHKDYKVAHESISRQMKGLNDSLDARISALEKLK 60

Query: 61 KNDSSQHVQAAE 73
          + ++SQ V+A E
Sbjct: 61 EVEASQSVEATE 72

The following BLAST results are available for this feature:

BLAST of Csa5G138470 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJB2_CUCSA	3.4e-31	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138470 PE=4 SV=1	[more]
A0A0S3REC7_PHAAN	2.6e-18	66.67	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G165100 PE=...	[more]
A0A0L9UDM5_PHAAN	2.6e-18	66.67	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g085000 PE=4 SV=1	[more]
E0CVB0_VITVI	9.7e-18	66.67	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01100 PE=4 SV=...	[more]
A0A058ZXT6_EUCGR	1.3e-17	66.67	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00422 PE=4 SV=1	[more]

BLAST of Csa5G138470 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53650.1	6.2e-16	54.17	unknown protein	[more]

BLAST of Csa5G138470 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778698619\|ref\|XP_011654572.1\|	4.9e-31	100.00	PREDICTED: uncharacterized protein LOC101210533 [Cucumis sativus]	[more]
gi\|659074555\|ref\|XP_008437667.1\|	7.1e-30	95.83	PREDICTED: uncharacterized protein LOC103483008 [Cucumis melo]	[more]
gi\|951041414\|ref\|XP_014517929.1\|	2.8e-18	66.67	PREDICTED: uncharacterized protein LOC106775335 [Vigna radiata var. radiata]	[more]
gi\|920697427\|gb\|KOM40652.1\|	3.7e-18	66.67	hypothetical protein LR48_Vigan04g085000 [Vigna angularis]	[more]
gi\|225455246\|ref\|XP_002272716.1\|	1.4e-17	66.67	PREDICTED: uncharacterized protein LOC100262248 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009062	fatty acid catabolic process
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097738	cucumber EST collection version 3.0	transcribed_cluster
CU105935	cucumber EST collection version 3.0	transcribed_cluster
CU152913	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa5G138470.1	Csa5G138470.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097738	CU097738	transcribed_cluster
CU105935	CU105935	transcribed_cluster
CU152913	CU152913	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34970	FAMILY NOT NAMED	coord: 2..72 score: 3.0
None	No IPR available	PANTHER	PTHR34970:SF2	SUBFAMILY NOT NAMED	coord: 2..72 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa5G138470	MELO3C005924	Melon (DHL92) v3.5.1	cumeB357
Csa5G138470	ClCG01G000130	Watermelon (Charleston Gray)	cuwcgB374
Csa5G138470	LsiUNG001610	Bottle gourd (USVL1VR-Ls)	culsiB321
Csa5G138470	MELO3C005924.2	Melon (DHL92) v3.6.1	cumedB336
Csa5G138470	Cla97C01G000120	Watermelon (97103) v2	cuwmbB346
Csa5G138470	Bhi12G000597	Wax gourd	cuwgoB446
Csa5G138470	CSPI05G02710	Wild cucumber (PI 183967)	cpicuB240
Csa5G138470	Cucsa.202580	Cucumber (Gy14) v1	cgycuB309
Csa5G138470	CmoCh02G011790	Cucurbita moschata (Rifu)	cmocuB602
Csa5G138470	CmoCh15G010630	Cucurbita moschata (Rifu)	cmocuB293

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa5G138470	Watermelon (97103) v1	cuwmB408
Csa5G138470	Cucurbita pepo (Zucchini)	cpecuB183
Csa5G138470	Cucumber (Gy14) v2	cgybcuB224