CmoCh02G005440 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G005440
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RING/U-box superfamily protein
Location	Cmo_Chr02 : 3092971 .. 3093642 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA

Homology

[Close]

BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 151 GAPASAIERL---------QRQEFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGH 210
           GA  + IER          + Q+  G ++E EE D    C++C   L+  E+V R+PC H
Sbjct: 256 GAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMH 315

Query: 211 VYHKCCILKWLQMSNSCPLCRTKLE 223
           ++H+ C+ +WL MS  CP+CR  +E
Sbjct: 316 LFHQLCVDQWLAMSKKCPICRVDIE 340

[Close]

BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1


Query: 151 GAPASAIERL---------QRQEFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGH 210
           GA  + IER          + Q+  G ++E EE D    C++C   L+  E+V R+PC H
Sbjct: 255 GAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMH 314

Query: 211 VYHKCCILKWLQMSNSCPLCRTKLE 223
           ++H+ C+ +WL MS  CP+CR  +E
Sbjct: 315 LFHQLCVDQWLAMSKKCPICRVDIE 339

[Close]

BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R +      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L R E        E  +C+VC E  + E E   +PC H++H  CI+ WL + 
Sbjct: 175 ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 234

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 235 NSCPVCRFEL 243

[Close]

BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-09
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1


Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L            E   C+VC +  +   E  ++PC H+YHK C+L WL++ 
Sbjct: 199 ASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELH 258

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 259 NSCPVCRHEL 268

[Close]

BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.7e-55
Identity = 115/217 (53.00%), Postives = 153/217 (70.51%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SF+CSI+   NG+ A++ QP+Q +ELRLG+ + L+   S QILQQT    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVI 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D +
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++++DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
            E+EVSRIPCGH++HK CILKWL++SNSCPLCR +LE
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 114/227 (50.22%), Postives = 154/227 (67.84%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCSI+     ++A+D QP+Q ++LRL +   L+   S+QILQQT  T + D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNVDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD--CSVCCEAL 189
           D++   WVDLDP    E +PA   GA  S IER+ ++++DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 224
            G        E+EVSRIPCGH+YHK CILKWL++SNSCPLCR +LE+
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1


Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS  C ++S       +D+Q   L+E+RL   + L+S  S Q +QQT  T + +ALF F 
Sbjct: 7   LSLDCCVRSI---PTTADKQ---LVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDLQ-HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVD 128
           L +L+   P L + ++LQFLS      A    I+  ISSFALQLAAGN++LNFH++  VD
Sbjct: 67  LPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFD-GLREEEEEGDCSVC-----C 188
           ++  I ++L+     +YSP   NG PAS +ERL  +++D G   E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTK 221
           E  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]

BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31
Identity = 97/207 (46.86%), Postives = 121/207 (58.45%), Query Frame = 1


Query: 31  QLLELRLGNSTHLISRSSRQ------ILQQTPTTPMGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T +G+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD I+  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQEFDGLREEEEE--GDCSVCCEALKGEE-EVSRIPC 210
             +  E      GA  SAIER+++Q+FDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 200

Query: 211 GHVYHKCCILKWLQMSNSCPLCRTKLE 223
           GHVYHK CILKWL++SNSCPLCR  LE
Sbjct: 201 GHVYHKSCILKWLEISNSCPLCRAALE 223

[Close]

BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.1e-27
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1


Query: 50  QILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFAL 109
           ++L QTP  P  +ALF   LR LQ P F    Y+ Q LSS +I  AA   +   I+S  L
Sbjct: 46  EVLHQTPRIPYHNALFYLSLRQLQSPLF----YITQILSSLNIRPAASQNMARRIASHIL 105

Query: 110 QLAAGNVDLNFHIVVEVDVIEMIWVDL---------DPFLVEEYSPAEMNGAPASAIERL 169
           Q+   N + NFHI+ EVD I +IW+           +  +++E  PA   G   +  ERL
Sbjct: 106 QMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERL 165

Query: 170 QRQEFDGLREEEEEGDCSVCCEALKGEE-EVSRIPCGHVYHKCCILKWLQMSNSCPLCRT 222
           + +E     + EE GDCS+C + L  E+ EV RIPCGHVYH+ CI KWL+  NSCPLCR 
Sbjct: 166 RSEE-----KMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK 218

[Close]

BLAST of CmoCh02G005440 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1


Query: 159 RLQRQEFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQMSNSCP 218
           R++ +EF  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETEP--CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTKL 222
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]

BLAST of CmoCh02G005440 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 159 RLQRQEF-DGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLC 218
           RL++Q++    R  +E   C VC E  K EEE+ R+ CGH +H  CI +WL+  N CP+C
Sbjct: 573 RLKQQKYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPIC 632

Query: 219 RT 220
           +T
Sbjct: 633 KT 634

[Close]

BLAST of CmoCh02G005440 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1


Query: 142 EEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R +      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]

BLAST of CmoCh02G005440 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1


Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L R E        E  +C+VC E  + E E   +PC H++H  CI+ WL + 
Sbjct: 175 ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 234

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 235 NSCPVCRFEL 243

[Close]

BLAST of CmoCh02G005440 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 1


Query: 136 LDPFLVEEYSPAEMNGAPAS--AIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRI 195
           ++P L       E    PAS  +I+ +   E DG      EG+C +C E  K EE V  +
Sbjct: 75  MNPLLRSLLESREEGRPPASKASIDAMPIVEIDGC-----EGECVICLEEWKSEETVKEM 134

Query: 196 PCGHVYHKCCILKWLQMSNSCPLCRTKL 222
           PC H +H  CI KWL    SCP+CR ++
Sbjct: 135 PCKHRFHGGCIEKWLGFHGSCPVCRYEM 157

[Close]

BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 6.7e-55
Identity = 115/217 (53.00%), Postives = 153/217 (70.51%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SF+CSI+   NG+ A++ QP+Q +ELRLG+ + L+   S QILQQT    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVI 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D +
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++++DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
            E+EVSRIPCGH++HK CILKWL++SNSCPLCR +LE
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]

BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 114/227 (50.22%), Postives = 154/227 (67.84%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCSI+     ++A+D QP+Q ++LRL +   L+   S+QILQQT  T + D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNVDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD--CSVCCEAL 189
           D++   WVDLDP    E +PA   GA  S IER+ ++++DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 224
            G        E+EVSRIPCGH+YHK CILKWL++SNSCPLCR +LE+
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]

BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 4.5e-43
Identity = 113/219 (51.60%), Postives = 142/219 (64.84%), Query Frame = 1


Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS +C I S+   T A +Q    L+E+RL   + L+S SS QI+QQT  TP+ DALF F 
Sbjct: 7   LSLECCIHSSV-ATTADEQ----LVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD-CSVCCEAL- 188
           D++  I VDLD     +YSP   NGAPAS IERL  +++D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCR 219
                + EEEV+RIPCGHVYHK CILKWL ++NSCPLCR
Sbjct: 187 CEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCR 214

[Close]

BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1


Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS  C ++S       +D+Q   L+E+RL   + L+S  S Q +QQT  T + +ALF F 
Sbjct: 7   LSLDCCVRSI---PTTADKQ---LVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDLQ-HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVD 128
           L +L+   P L + ++LQFLS      A    I+  ISSFALQLAAGN++LNFH++  VD
Sbjct: 67  LPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFD-GLREEEEEGDCSVC-----C 188
           ++  I ++L+     +YSP   NG PAS +ERL  +++D G   E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTK 221
           E  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]

BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 103/218 (47.25%), Postives = 129/218 (59.17%), Query Frame = 1


Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCS  +T N            L  R G S+ LI     QILQQTP+  MG+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNVDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    NV  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALK 189
           V+ +E + +    F  E  SP    GAP SAIERL++++FD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 187

Query: 190 GE-EEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
           G+ +EVSRIPCGHVYHK CIL WLQ++NSCPLCR  L+
Sbjct: 188 GQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

The following BLAST results are available for this feature:

BLAST of CmoCh02G005440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN165_MOUSE	1.1e-09	36.47	RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1	[more]
RN165_HUMAN	1.5e-09	36.47	RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1	[more]
XERIC_ARATH	7.3e-09	35.80	Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE...	[more]
RDUF2_ARATH	7.3e-09	42.86	E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1	[more]
RING1_GOSHI	9.5e-09	40.00	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1	[more]

BLAST of CmoCh02G005440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRB0_CUCSA	4.7e-55	53.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1	[more]
A0A0A0L3Z2_CUCSA	1.7e-52	50.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1	[more]
A0A0A0LHI3_CUCSA	1.9e-35	44.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1	[more]
A0A0A0LHS2_CUCSA	3.6e-31	46.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1	[more]
A0A0A0K696_CUCSA	7.1e-27	42.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1	[more]

BLAST of CmoCh02G005440 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G05350.1	1.8e-10	42.42	RING/U-box superfamily protein	[more]
AT1G45180.1	1.8e-10	43.55	RING/U-box superfamily protein	[more]
AT2G04240.1	4.1e-10	35.80	RING/U-box superfamily protein	[more]
AT5G59550.1	4.1e-10	42.86	zinc finger (C3HC4-type RING finger) family protein	[more]
AT1G26800.1	4.1e-10	37.50	RING/U-box superfamily protein	[more]

BLAST of CmoCh02G005440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674460\|ref\|XP_011650219.1\|	6.7e-55	53.00	PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus]	[more]
gi\|700199693\|gb\|KGN54851.1\|	2.4e-52	50.22	hypothetical protein Csa_4G551140 [Cucumis sativus]	[more]
gi\|659132530\|ref\|XP_008466247.1\|	4.5e-43	51.60	PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo]	[more]
gi\|778689036\|ref\|XP_011652885.1\|	2.7e-35	44.75	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus]	[more]
gi\|659121671\|ref\|XP_008460768.1\|	7.2e-33	47.25	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G005440.1	CmoCh02G005440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 176..218 score: 5.1
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 177..217 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 177..218 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 172..221 score: 4.9
None	No IPR available	PANTHER	PTHR22763	RING ZINC FINGER PROTEIN	coord: 129..222 score: 6.9
None	No IPR available	PANTHER	PTHR22763:SF46	PROTEIN SAN1	coord: 129..222 score: 6.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 169..221 score: 9.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G005440	CmaCh02G005320	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G005440	Cp4.1LG05g11570	Cucurbita pepo (Zucchini)	cmocpeB595

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G005440	Silver-seed gourd	carcmoB1422
CmoCh02G005440	Cucumber (Chinese Long) v3	cmocucB0682
CmoCh02G005440	Cucumber (Chinese Long) v3	cmocucB0685
CmoCh02G005440	Cucumber (Chinese Long) v3	cmocucB0737
CmoCh02G005440	Watermelon (97103) v2	cmowmbB594
CmoCh02G005440	Wax gourd	cmowgoB0759
CmoCh02G005440	Cucurbita moschata (Rifu)	cmocmoB404
CmoCh02G005440	Cucumber (Gy14) v1	cgycmoB0224
CmoCh02G005440	Cucumber (Gy14) v1	cgycmoB1020
CmoCh02G005440	Cucurbita maxima (Rimu)	cmacmoB554
CmoCh02G005440	Wild cucumber (PI 183967)	cmocpiB576
CmoCh02G005440	Wild cucumber (PI 183967)	cmocpiB623
CmoCh02G005440	Cucumber (Chinese Long) v2	cmocuB571
CmoCh02G005440	Cucumber (Chinese Long) v2	cmocuB617
CmoCh02G005440	Melon (DHL92) v3.5.1	cmomeB575
CmoCh02G005440	Watermelon (Charleston Gray)	cmowcgB518
CmoCh02G005440	Watermelon (Charleston Gray)	cmowcgB532
CmoCh02G005440	Watermelon (97103) v1	cmowmB565
CmoCh02G005440	Watermelon (97103) v1	cmowmB581
CmoCh02G005440	Bottle gourd (USVL1VR-Ls)	cmolsiB530
CmoCh02G005440	Cucumber (Gy14) v2	cgybcmoB217
CmoCh02G005440	Cucumber (Gy14) v2	cgybcmoB795