CmoCh02G005440 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G005440
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr02 : 3092971 .. 3093642 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA

mRNA sequence

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA

Coding sequence (CDS)

ATGTCTTTAACCTTCCACGACTATCTGTCCTTCCAATGTTCCATCCAAAGCACTTGCAACGGCACCGTGGCTTCCGACCAGCAACCCATGCAGCTCCTGGAACTCCGACTCGGAAATTCGACCCATCTGATTTCTCGATCTTCTCGCCAAATTCTCCAACAAACTCCCACAACCCCAATGGGCGATGCTCTGTTTCCTTTTGTTCTGCGCGACCTCCAACACCCACCCTTCCTCTCCAACTGCTATGTTCTTCAGTTTTTGTCTTCCTTCAGCATCCCCATCGCCGCCTGCGATATCATCTATGAAGAGATCTCCTCGTTTGCGCTCCAATTGGCCGCCGGCAACGTGGATCTCAACTTCCACATCGTCGTCGAAGTGGATGTCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTGTTGAAGAATATTCTCCGGCTGAGATGAATGGGGCGCCGGCGTCGGCGATTGAGAGGTTGCAGAGGCAGGAATTTGATGGGTTAAGGGAGGAAGAGGAGGAGGGGGATTGCAGTGTTTGTTGCGAAGCGCTGAAGGGAGAAGAGGAGGTGAGTAGAATCCCGTGTGGTCATGTGTATCACAAATGCTGTATTCTCAAGTGGCTTCAGATGAGCAATTCGTGTCCTCTGTGTAGAACCAAATTAGAACAATAA
Homology
[Close]
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RN165_MOUSE (RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 151 GAPASAIERL---------QRQEFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGH 210
           GA  + IER          + Q+  G ++E EE D    C++C   L+  E+V R+PC H
Sbjct: 256 GAVQNTIERFTFPHKYKKRRPQDSKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMH 315

Query: 211 VYHKCCILKWLQMSNSCPLCRTKLE 223
           ++H+ C+ +WL MS  CP+CR  +E
Sbjct: 316 LFHQLCVDQWLAMSKKCPICRVDIE 340

[Close]
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RN165_HUMAN (RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.5e-09
Identity = 31/85 (36.47%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 151 GAPASAIERL---------QRQEFDGLREEEEEGD----CSVCCEALKGEEEVSRIPCGH 210
           GA  + IER          + Q+  G ++E EE D    C++C   L+  E+V R+PC H
Sbjct: 255 GAVQNTIERFTFPHKYKKRRPQDGKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMH 314

Query: 211 VYHKCCILKWLQMSNSCPLCRTKLE 223
           ++H+ C+ +WL MS  CP+CR  +E
Sbjct: 315 LFHQLCVDQWLAMSKKCPICRVDIE 339

[Close]
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1 

Query: 142 EEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R +      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.3e-09
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L R E        E  +C+VC E  + E E   +PC H++H  CI+ WL + 
Sbjct: 175 ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 234

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 235 NSCPVCRFEL 243

[Close]
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.5e-09
Identity = 28/70 (40.00%), Postives = 39/70 (55.71%), Query Frame = 1 

Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L            E   C+VC +  +   E  ++PC H+YHK C+L WL++ 
Sbjct: 199 ASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELH 258

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 259 NSCPVCRHEL 268

[Close]
BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.7e-55
Identity = 115/217 (53.00%), Postives = 153/217 (70.51%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SF+CSI+   NG+ A++ QP+Q +ELRLG+ + L+   S QILQQT    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVI 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D +
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++++DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
            E+EVSRIPCGH++HK CILKWL++SNSCPLCR +LE
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 114/227 (50.22%), Postives = 154/227 (67.84%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCSI+     ++A+D QP+Q ++LRL +   L+   S+QILQQT  T + D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNVDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD--CSVCCEAL 189
           D++   WVDLDP    E +PA   GA  S IER+ ++++DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 224
            G        E+EVSRIPCGH+YHK CILKWL++SNSCPLCR +LE+
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]
BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.9e-35
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1 

Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS  C ++S       +D+Q   L+E+RL   + L+S  S Q +QQT  T + +ALF F 
Sbjct: 7   LSLDCCVRSI---PTTADKQ---LVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDLQ-HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVD 128
           L +L+   P L + ++LQFLS      A    I+  ISSFALQLAAGN++LNFH++  VD
Sbjct: 67  LPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFD-GLREEEEEGDCSVC-----C 188
           ++  I ++L+     +YSP   NG PAS +ERL  +++D G   E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTK 221
           E  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0LHS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 3.6e-31
Identity = 97/207 (46.86%), Postives = 121/207 (58.45%), Query Frame = 1 

Query: 31  QLLELRLGNSTHLISRSSRQ------ILQQTPTTPMGDALFPFVLRDLQHPPFLSNC--Y 90
           Q L +RL   + LIS+S         IL+QTP T +G+ALF   L +LQ+P         
Sbjct: 21  QTLIVRLRFCSRLISQSLAPEIVPDVILEQTPFTLIGEALFS--LSNLQYPLQQQELEYM 80

Query: 91  VLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVIEMIWVDLDPFLVE 150
           V +FL SF++  + C I+   I SFA Q    N    F I   VD I+  W +  P L  
Sbjct: 81  VNEFLRSFNLRSSVCRIVSHNILSFAQQFDINNEC--FKIETNVDYIKEYWTEAAPELYP 140

Query: 151 EYSPAEMN----GAPASAIERLQRQEFDGLREEEEE--GDCSVCCEALKGEE-EVSRIPC 210
             +  E      GA  SAIER+++Q+FDG R EEEE  GDCSVCCE +K +  EV RIPC
Sbjct: 141 ISTVGEEGLPPRGASESAIERVKKQKFDGFRGEEEEEIGDCSVCCEEIKRKGGEVRRIPC 200

Query: 211 GHVYHKCCILKWLQMSNSCPLCRTKLE 223
           GHVYHK CILKWL++SNSCPLCR  LE
Sbjct: 201 GHVYHKSCILKWLEISNSCPLCRAALE 223

[Close]
BLAST of CmoCh02G005440 vs. TrEMBL
Match: A0A0A0K696_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.1e-27
Identity = 78/182 (42.86%), Postives = 103/182 (56.59%), Query Frame = 1 

Query: 50  QILQQTPTTPMGDALFPFVLRDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFAL 109
           ++L QTP  P  +ALF   LR LQ P F    Y+ Q LSS +I  AA   +   I+S  L
Sbjct: 46  EVLHQTPRIPYHNALFYLSLRQLQSPLF----YITQILSSLNIRPAASQNMARRIASHIL 105

Query: 110 QLAAGNVDLNFHIVVEVDVIEMIWVDL---------DPFLVEEYSPAEMNGAPASAIERL 169
           Q+   N + NFHI+ EVD I +IW+           +  +++E  PA   G   +  ERL
Sbjct: 106 QMPDRNSETNFHILAEVDFIRLIWLPSMGGGGAGAEETVVLDEAPPAVKRGVGVARGERL 165

Query: 170 QRQEFDGLREEEEEGDCSVCCEALKGEE-EVSRIPCGHVYHKCCILKWLQMSNSCPLCRT 222
           + +E     + EE GDCS+C + L  E+ EV RIPCGHVYH+ CI KWL+  NSCPLCR 
Sbjct: 166 RSEE-----KMEELGDCSICLDELSCEKREVMRIPCGHVYHESCIFKWLENHNSCPLCRK 218

[Close]
BLAST of CmoCh02G005440 vs. TAIR10
Match: AT4G05350.1 (AT4G05350.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 28/66 (42.42%), Postives = 44/66 (66.67%), Query Frame = 1 

Query: 159 RLQRQEFDGLREEEEEGDCSVCCEALKG---EEEVSRIPCGHVYHKCCILKWLQMSNSCP 218
           R++ +EF  L+ E E   CS+C E+L       +V+R+ C HV+H  C+L+WL+  N+CP
Sbjct: 141 RMKAEEFKSLKMETEP--CSICLESLVSGPKPRDVTRMTCSHVFHNGCLLEWLKRKNTCP 200

Query: 219 LCRTKL 222
           LCRT++
Sbjct: 201 LCRTEI 204

[Close]
BLAST of CmoCh02G005440 vs. TAIR10
Match: AT1G45180.1 (AT1G45180.1 RING/U-box superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 159 RLQRQEF-DGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLC 218
           RL++Q++    R  +E   C VC E  K EEE+ R+ CGH +H  CI +WL+  N CP+C
Sbjct: 573 RLKQQKYKSSTRSSQEVEPCCVCQEEYKEEEEIGRLECGHDFHSQCIKEWLKQKNLCPIC 632

Query: 219 RT 220
           +T
Sbjct: 633 KT 634

[Close]
BLAST of CmoCh02G005440 vs. TAIR10
Match: AT2G04240.1 (AT2G04240.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1 

Query: 142 EEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHK 201
           E Y     N  P    E L R +      ++ + +CSVC    +G+ E++++ CGH++HK
Sbjct: 74  ESYLEEFRNRTPTLRFESLCRCK------KQADNECSVCLSKFQGDSEINKLKCGHLFHK 133

Query: 202 CCILKWLQMSN-SCPLCRTKL 222
            C+ KW+   N +CPLCRT L
Sbjct: 134 TCLEKWIDYWNITCPLCRTPL 148

[Close]
BLAST of CmoCh02G005440 vs. TAIR10
Match: AT5G59550.1 (AT5G59550.1 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 1 

Query: 152 APASAIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRIPCGHVYHKCCILKWLQMS 211
           A  SAIE L R E        E  +C+VC E  + E E   +PC H++H  CI+ WL + 
Sbjct: 175 ASKSAIESLPRVEISDCHIGSE-ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIR 234

Query: 212 NSCPLCRTKL 222
           NSCP+CR +L
Sbjct: 235 NSCPVCRFEL 243

[Close]
BLAST of CmoCh02G005440 vs. TAIR10
Match: AT1G26800.1 (AT1G26800.1 RING/U-box superfamily protein)

HSP 1 Score: 62.4 bits (150), Expect = 4.1e-10
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 1 

Query: 136 LDPFLVEEYSPAEMNGAPAS--AIERLQRQEFDGLREEEEEGDCSVCCEALKGEEEVSRI 195
           ++P L       E    PAS  +I+ +   E DG      EG+C +C E  K EE V  +
Sbjct: 75  MNPLLRSLLESREEGRPPASKASIDAMPIVEIDGC-----EGECVICLEEWKSEETVKEM 134

Query: 196 PCGHVYHKCCILKWLQMSNSCPLCRTKL 222
           PC H +H  CI KWL    SCP+CR ++
Sbjct: 135 PCKHRFHGGCIEKWLGFHGSCPVCRYEM 157

[Close]
BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 6.7e-55
Identity = 115/217 (53.00%), Postives = 153/217 (70.51%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SF+CSI+   NG+ A++ QP+Q +ELRLG+ + L+   S QILQQT    + D L  F L
Sbjct: 8   SFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRFPL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVDVI 129
           R+L+ PPF+S+  + +FLSS++I  A CD I+ +ISSFA QL AGN++ NFHI+  +D +
Sbjct: 68  RELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALDFV 127

Query: 130 EMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALKG--- 189
              WVDLDP    E + A   GAP SAIERL ++++DG   EE E +CSVC E L G   
Sbjct: 128 YTHWVDLDP---AEDAAAVRQGAPRSAIERLMKEKYDGNGGEEMEDECSVCYEDLHGKTE 187

Query: 190 -EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
            E+EVSRIPCGH++HK CILKWL++SNSCPLCR +LE
Sbjct: 188 KEKEVSRIPCGHMFHKSCILKWLKISNSCPLCRGELE 221

[Close]
BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 2.4e-52
Identity = 114/227 (50.22%), Postives = 154/227 (67.84%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCSI+     ++A+D QP+Q ++LRL +   L+   S+QILQQT  T + D L PF L
Sbjct: 8   SFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPFSL 67

Query: 70  RDLQHPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQL---AAGNVDLNFHIVVEV 129
            +L+ PPF+S  ++ +FLSS+ I  A CD I+  ISSFA Q+   A  N+++NFHI+ +V
Sbjct: 68  WELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIADV 127

Query: 130 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD--CSVCCEAL 189
           D++   WVDLDP    E +PA   GA  S IER+ ++++DG   EE+EGD  CSVC E L
Sbjct: 128 DIVYTHWVDLDP---AEDAPAVRKGASTSVIERVMKEKYDGNGGEEKEGDDQCSVCYEQL 187

Query: 190 KG--------EEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLEQ 224
            G        E+EVSRIPCGH+YHK CILKWL++SNSCPLCR +LE+
Sbjct: 188 YGKRENENEKEKEVSRIPCGHMYHKSCILKWLKISNSCPLCRRELEE 231

[Close]
BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 183.3 bits (464), Expect = 4.5e-43
Identity = 113/219 (51.60%), Postives = 142/219 (64.84%), Query Frame = 1 

Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS +C I S+   T A +Q    L+E+RL   + L+S SS QI+QQT  TP+ DALF F 
Sbjct: 7   LSLECCIHSSV-ATTADEQ----LVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFP 66

Query: 69  LRDLQ--HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEV 128
           L +L+  +PPF  +  +LQFLS      A    I+  ISSFALQLAAGN++LNFH++  V
Sbjct: 67  LPELELENPPFFFHDLLLQFLSP-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATV 126

Query: 129 DVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGD-CSVCCEAL- 188
           D++  I VDLD     +YSP   NGAPAS IERL  +++D     EE GD C VC E L 
Sbjct: 127 DLLYTISVDLD-LDPPQYSPLVRNGAPASVIERLMDEKYDDGNGREEMGDQCCVCYEDLN 186

Query: 189 -----KGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCR 219
                + EEEV+RIPCGHVYHK CILKWL ++NSCPLCR
Sbjct: 187 CEREEEKEEEVTRIPCGHVYHKYCILKWLNINNSCPLCR 214

[Close]
BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 2.7e-35
Identity = 98/219 (44.75%), Postives = 136/219 (62.10%), Query Frame = 1 

Query: 9   LSFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFV 68
           LS  C ++S       +D+Q   L+E+RL   + L+S  S Q +QQT  T + +ALF F 
Sbjct: 7   LSLDCCVRSI---PTTADKQ---LVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFP 66

Query: 69  LRDLQ-HPPFLSNCYVLQFLSSFSIPIAACDIIYEEISSFALQLAAGNVDLNFHIVVEVD 128
           L +L+   P L + ++LQFLS      A    I+  ISSFALQLAAGN++LNFH++  VD
Sbjct: 67  LPELELENPSLFHDFLLQFLSP-----ADSAAIFHNISSFALQLAAGNLNLNFHLIATVD 126

Query: 129 VIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFD-GLREEEEEGDCSVC-----C 188
           ++  I ++L+     +YSP   NG PAS +ERL  +++D G   E   G C VC     C
Sbjct: 127 LLYTISINLN-LNPPQYSPPVRNGVPASVMERLMNEKYDDGNGGEGMGGQCCVCYEDLNC 186

Query: 189 EALKGEEEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTK 221
           E  + +EE +RIPCGHVYHK CILKWL ++NSCPLCR++
Sbjct: 187 EREEEKEEATRIPCGHVYHKSCILKWLNVNNSCPLCRSE 213

[Close]
BLAST of CmoCh02G005440 vs. NCBI nr
Match: gi|659121671|ref|XP_008460768.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 7.2e-33
Identity = 103/218 (47.25%), Postives = 129/218 (59.17%), Query Frame = 1 

Query: 10  SFQCSIQSTCNGTVASDQQPMQLLELRLGNSTHLISRSSRQILQQTPTTPMGDALFPFVL 69
           SFQCS  +T N            L  R G S+ LI     QILQQTP+  MG+ L PF  
Sbjct: 8   SFQCSFSATPNTD--------HFLICRFGYSSRLIIVD--QILQQTPSILMGETLIPF-- 67

Query: 70  RDLQHPPFLSNCYVL--QFLSSFSIP--IAACDIIYEEISSFALQLAAGNVDLNFHIVVE 129
            +L HP    +   L  +FL SF++    +A   I  +I SFALQ    NV  +F I   
Sbjct: 68  SNLWHPEQQQSIEFLVNEFLGSFNLHSFASARRTICRKILSFALQF--HNVHGSFKIEAN 127

Query: 130 VDVIEMIWVDLDPFLVEEYSPAEMNGAPASAIERLQRQEFDGLREEEEEGDCSVCCEALK 189
           V+ +E + +    F  E  SP    GAP SAIERL++++FD L +EEE GDCSVC E LK
Sbjct: 128 VEHVEDLIIGEQGF-QETPSPPRTTGAPESAIERLRKEKFDVLNKEEEIGDCSVCYEELK 187

Query: 190 GE-EEVSRIPCGHVYHKCCILKWLQMSNSCPLCRTKLE 223
           G+ +EVSRIPCGHVYHK CIL WLQ++NSCPLCR  L+
Sbjct: 188 GQGKEVSRIPCGHVYHKSCILTWLQINNSCPLCRAPLQ 210

The following BLAST results are available for this feature:
BLAST of CmoCh02G005440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN165_MOUSE1.1e-0936.47RING finger protein 165 OS=Mus musculus GN=Rnf165 PE=2 SV=1[more]
RN165_HUMAN1.5e-0936.47RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1[more]
XERIC_ARATH7.3e-0935.80Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE... [more]
RDUF2_ARATH7.3e-0942.86E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RING1_GOSHI9.5e-0940.00E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
BLAST of CmoCh02G005440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA4.7e-5553.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA1.7e-5250.22Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA1.9e-3544.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
A0A0A0LHS2_CUCSA3.6e-3146.86Uncharacterized protein OS=Cucumis sativus GN=Csa_2G130680 PE=4 SV=1[more]
A0A0A0K696_CUCSA7.1e-2742.86Uncharacterized protein OS=Cucumis sativus GN=Csa_7G026750 PE=4 SV=1[more]
BLAST of CmoCh02G005440 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G05350.11.8e-1042.42 RING/U-box superfamily protein[more]
AT1G45180.11.8e-1043.55 RING/U-box superfamily protein[more]
AT2G04240.14.1e-1035.80 RING/U-box superfamily protein[more]
AT5G59550.14.1e-1042.86 zinc finger (C3HC4-type RING finger) family protein[more]
AT1G26800.14.1e-1037.50 RING/U-box superfamily protein[more]
BLAST of CmoCh02G005440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|6.7e-5553.00PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|2.4e-5250.22hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|4.5e-4351.60PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|2.7e-3544.75PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
gi|659121671|ref|XP_008460768.1|7.2e-3347.25PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005440.1CmoCh02G005440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 176..218
score: 5.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 177..217
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 177..218
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 172..221
score: 4.9
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 129..222
score: 6.9
NoneNo IPR availablePANTHERPTHR22763:SF46PROTEIN SAN1coord: 129..222
score: 6.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 169..221
score: 9.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G005440CmaCh02G005320Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G005440Cp4.1LG05g11570Cucurbita pepo (Zucchini)cmocpeB595
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G005440Wax gourdcmowgoB0759
CmoCh02G005440Cucurbita moschata (Rifu)cmocmoB404
CmoCh02G005440Cucumber (Gy14) v1cgycmoB0224
CmoCh02G005440Cucumber (Gy14) v1cgycmoB1020
CmoCh02G005440Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G005440Wild cucumber (PI 183967)cmocpiB576
CmoCh02G005440Wild cucumber (PI 183967)cmocpiB623
CmoCh02G005440Cucumber (Chinese Long) v2cmocuB571
CmoCh02G005440Cucumber (Chinese Long) v2cmocuB617
CmoCh02G005440Melon (DHL92) v3.5.1cmomeB575
CmoCh02G005440Watermelon (Charleston Gray)cmowcgB518
CmoCh02G005440Watermelon (Charleston Gray)cmowcgB532
CmoCh02G005440Watermelon (97103) v1cmowmB565
CmoCh02G005440Watermelon (97103) v1cmowmB581
CmoCh02G005440Bottle gourd (USVL1VR-Ls)cmolsiB530
CmoCh02G005440Cucumber (Gy14) v2cgybcmoB217
CmoCh02G005440Cucumber (Gy14) v2cgybcmoB795
CmoCh02G005440Silver-seed gourdcarcmoB1422
CmoCh02G005440Cucumber (Chinese Long) v3cmocucB0682
CmoCh02G005440Cucumber (Chinese Long) v3cmocucB0685
CmoCh02G005440Cucumber (Chinese Long) v3cmocucB0737
CmoCh02G005440Watermelon (97103) v2cmowmbB594