Cp4.1LG05g11570 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG05g11570
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG05 : 7779034 .. 7779854 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAATTACGAAATATGTAATTCTGATTTTTTGTGCAACAATTTGTTGCCCACCAATGAATTTAGATCACTGAGAGTGATAATAAATTTCTCTGTCTCAACTTTCAATTGACTCAATGTTCACCAAATTGTATAACAACAATCATCAAATAATTAGCCATGGAGAAATAAAATCGAGGAGGTTGCGCTAAGGGAAAACCAAACACGAGGAGAGATGAATACGACTCCTCTCATAGATTGAGTACAGCCCTGATATGTGTTAGTGCTACCTAG

mRNA sequence

ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGTGCTACCTAG

Coding sequence (CDS)

ATGTCTCTAACCTTCGGCGACTCTTTGTCCTTCCAATTTTCCATCCGCACCAATACCACCGGCACCGTCGCTTCCCACGAGCAACTCATGCAGTTCGTGGAACTCCGACTCGGACATTCAAGCCATCTCATCTCTCGATCTTCTCGCCAAATTCTTCAACAAAGTCCCTCATCTCCATTGGGCGAATCTCTGTTCCCTTTTATTCTGCGCGACCTGGAACACCCACCCTTCCTCCCCAACTACCACGTGCTTCATTTTTTGTCTTCCTTCAGCATCCCCATTGCCGCCTGCGATATCATCTATCAGGAGATCTCCTCGTTTGCGCTCCGCTTGGCCGCCGACAACATCGATCTCAACTTCCACATCGTCGTGGATGTGGATGCCATCGAAATGATATGGGTGGACCTGGACCCATTCCTTATTCAAGAATACTCTCCGCCTGCGATGAACGGGGCGCCGGCGTCGGCGATTGAGAGTGCTACCTAG

Protein sequence

MSLTFGDSLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPFILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIESAT
BLAST of Cp4.1LG05g11570 vs. TrEMBL
Match: A0A0A0LRB0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.3e-26
Identity = 71/151 (47.02%), Postives = 97/151 (64.24%), Query Frame = 1

Query: 8   SLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPF 67
           + SF+ SIR N  G+ A++ Q +QFVELRLGH S L+   S QILQQ+    + ++L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVD 127
            LR+LE PPF+ +  +  FLSS++I  A CD I+ +ISSFA +L A N++ NFHI+  +D
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 AIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 159
            +   WVDLDP    E +     GAP SAIE
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIE 153

BLAST of Cp4.1LG05g11570 vs. TrEMBL
Match: A0A0A0L3Z2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 8.1e-25
Identity = 72/154 (46.75%), Postives = 97/154 (62.99%), Query Frame = 1

Query: 8   SLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPF 67
           + SFQ SIR N   ++A+  Q +QFV+LRL H   L+   S+QILQQ+  + + ++L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFA--LRLAAD-NIDLNFHIVV 127
            L +LE PPF+  + +  FLSS+ I  A CD I+  ISSFA  + LAAD NI++NFHI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 159
           DVD +   WVDLDP    E +P    GA  S IE
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIE 156

BLAST of Cp4.1LG05g11570 vs. TrEMBL
Match: A0A0A0LHI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.9e-12
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1

Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPFILRDLEHPPFLPNYHVLH-FLSS 90
           Q VE+RL   S L+S  S Q +QQ+  + +  +LF F L +LE    L N  + H FL  
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELE----LENPSLFHDFLLQ 82

Query: 91  FSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVDAIEMIWVDLDPFLIQEYSPPAM 150
           F  P A    I+  ISSFAL+LAA N++LNFH++  VD +  I ++L+     +YSPP  
Sbjct: 83  FLSP-ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIE 159
           NG PAS +E
Sbjct: 143 NGVPASVME 145

BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match: gi|778674460|ref|XP_011650219.1| (PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 6.2e-26
Identity = 71/151 (47.02%), Postives = 97/151 (64.24%), Query Frame = 1

Query: 8   SLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPF 67
           + SF+ SIR N  G+ A++ Q +QFVELRLGH S L+   S QILQQ+    + ++L  F
Sbjct: 6   TFSFRCSIRCNANGSAATNGQPLQFVELRLGHFSQLVLSPSHQILQQTSPILISDTLIRF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVD 127
            LR+LE PPF+ +  +  FLSS++I  A CD I+ +ISSFA +L A N++ NFHI+  +D
Sbjct: 66  PLRELEDPPFISHSSLCRFLSSYNISDAVCDAIFLKISSFAFQLVAGNLNSNFHIIAALD 125

Query: 128 AIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 159
            +   WVDLDP    E +     GAP SAIE
Sbjct: 126 FVYTHWVDLDP---AEDAAAVRQGAPRSAIE 153

BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match: gi|700199693|gb|KGN54851.1| (hypothetical protein Csa_4G551140 [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 1.2e-24
Identity = 72/154 (46.75%), Postives = 97/154 (62.99%), Query Frame = 1

Query: 8   SLSFQFSIRTNTTGTVASHEQLMQFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPF 67
           + SFQ SIR N   ++A+  Q +QFV+LRL H   L+   S+QILQQ+  + + ++L PF
Sbjct: 6   TFSFQCSIRRNGKSSLATDGQPLQFVQLRLRHFGQLVHTPSQQILQQTSPTLISDTLIPF 65

Query: 68  ILRDLEHPPFLPNYHVLHFLSSFSIPIAACDIIYQEISSFA--LRLAAD-NIDLNFHIVV 127
            L +LE PPF+  + +  FLSS+ I  A CD I+  ISSFA  + LAAD NI++NFHI+ 
Sbjct: 66  SLWELEDPPFISYFFLFRFLSSYDISAAVCDAIFYNISSFAGQILLAADSNINVNFHIIA 125

Query: 128 DVDAIEMIWVDLDPFLIQEYSPPAMNGAPASAIE 159
           DVD +   WVDLDP    E +P    GA  S IE
Sbjct: 126 DVDIVYTHWVDLDP---AEDAPAVRKGASTSVIE 156

BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match: gi|659132530|ref|XP_008466247.1| (PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo])

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-16
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 1

Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPFILRDLE--HPPFLPNYHVLHFLS 90
           Q VE+RL   S L+S SS QI+QQ+  +P+ ++LF F L +LE  +PPF  +  +L FLS
Sbjct: 24  QLVEIRLRRYSKLVSPSSNQIIQQTFPTPISDALFHFPLPELELENPPFFFHDLLLQFLS 83

Query: 91  SFSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVDAIEMIWVDLDPFLIQEYSPPA 150
                 A    I+  ISSFAL+LAA N++LNFH++  VD +  I VDLD     +YSP  
Sbjct: 84  P-----ADSTAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISVDLD-LDPPQYSPLV 143

Query: 151 MNGAPASAIE 159
            NGAPAS IE
Sbjct: 144 RNGAPASVIE 147

BLAST of Cp4.1LG05g11570 vs. NCBI nr
Match: gi|778689036|ref|XP_011652885.1| (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus])

HSP 1 Score: 78.6 bits (192), Expect = 1.1e-11
Identity = 55/129 (42.64%), Postives = 76/129 (58.91%), Query Frame = 1

Query: 31  QFVELRLGHSSHLISRSSRQILQQSPSSPLGESLFPFILRDLEHPPFLPNYHVLH-FLSS 90
           Q VE+RL   S L+S  S Q +QQ+  + +  +LF F L +LE    L N  + H FL  
Sbjct: 23  QLVEIRLRRFSKLVSPFSNQNIQQTFPTSISNALFHFPLPELE----LENPSLFHDFLLQ 82

Query: 91  FSIPIAACDIIYQEISSFALRLAADNIDLNFHIVVDVDAIEMIWVDLDPFLIQEYSPPAM 150
           F  P A    I+  ISSFAL+LAA N++LNFH++  VD +  I ++L+     +YSPP  
Sbjct: 83  FLSP-ADSAAIFHNISSFALQLAAGNLNLNFHLIATVDLLYTISINLN-LNPPQYSPPVR 142

Query: 151 NGAPASAIE 159
           NG PAS +E
Sbjct: 143 NGVPASVME 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LRB0_CUCSA4.3e-2647.02Uncharacterized protein OS=Cucumis sativus GN=Csa_2G432790 PE=4 SV=1[more]
A0A0A0L3Z2_CUCSA8.1e-2546.75Uncharacterized protein OS=Cucumis sativus GN=Csa_4G551140 PE=4 SV=1[more]
A0A0A0LHI3_CUCSA7.9e-1242.64Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|778674460|ref|XP_011650219.1|6.2e-2647.02PREDICTED: RING-H2 finger protein ATL16-like [Cucumis sativus][more]
gi|700199693|gb|KGN54851.1|1.2e-2446.75hypothetical protein Csa_4G551140 [Cucumis sativus][more]
gi|659132530|ref|XP_008466247.1|3.4e-1647.69PREDICTED: uncharacterized protein LOC103503717 [Cucumis melo][more]
gi|778689036|ref|XP_011652885.1|1.1e-1142.64PREDICTED: RING-H2 finger protein ATL66-like [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG05g11570.1Cp4.1LG05g11570.1mRNA


The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG05g11570CmoCh02G005440Cucurbita moschata (Rifu)cmocpeB595
The following gene(s) are paralogous to this gene:

None